Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0017180 | OGI:05055040 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:21410246-21413875 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caatcaaatgcagcaagccacactaattaattaaagatagtacatatatatatggtggttcgtctctgtgaacggagAaaaaaagagataaacatgaacaaatgaaacaagcagtatttgctaatgtaacaacacattttcttctgcatgtaaagtggtggtaaacaagccctcctagctaagggtctttaggatattaataataattcaccagtttagtcttcagctcttggttattctcctcaattcatttacctgggatatatataagtgccagaaagttacattaatagggtgtcagaaaaatggagaaaaatgatcactaattaattaaactgcttcatcagttgttctattgaagaattaatgctacctatactgaaaaaatatatatgcccctatatatttacgtgtactggagtagcatccatgaagaataaatcaattaattatcatactgttcgcaaaatgtagaagttgactgatgcgcacgactattaaaatttactcctcgagtcataaatatttttctagcgcattatttgatcaaactttcaaaaattctgactatcaacaattcctcaaatgcttacttttaagaaaatagtattaattgtatgtttgtctaaaaatgtactatcatagtaccataagcttataaaattttataaccttgttataatataTaaattaatggttggaactcttaagttgtataaaatcttgccatatgtaaacgtcaaatatttatgactggaaaagtactattttgtacgtcactagatccatgttactactagtttaattaattcaagtgtttaattaattgatgttccacagtacatgaagataaccaaaaaaaaataagatagagagagaagtcttgtgaccagcaggccgaccatgaccagccgtacgttggctcatgcgtacgcacgcgtgcatattaaaatgtacgctggcgcatatatatgccgtacgacgttggagtatcattttttatcaattcaagccttgtttacttgggaaaaaaaatttaggtttgatcgttacatcggatatacgcgatccatatttgaagtattaaatgtagtttaataacaaaataaattagcactacattgtcaaatcatgacgcgattaggcttaaaagattcgtctcacaatttacacgcaaactgtgcaattagattttattttgtccacatttaattctatatgcgtgtgtccaaatattcgatgtgatagatgaaaagtttttgttttggaactaaacaaggcctctaagtagtgcagctctgtacgtaggagccaattcttttttAaaaaaaaatgttccaatatacacttctgtatcttcagttttatttttttttctttgtgctACacaggcttcagctggaacttgcacggcatggcatgaaataccgagtagtctacacatatcagaatttaagtagtaattttgtccagcttgcagagtagtactataagaatatgcccttattacacgcaatgttccaaattaaaatcccctttgttccaaaaattattacactgcttataggtaaatattttgattatactccaaagatgagtttgaattttagattttgattttaggattaattttaatataacaatctgcgcagtggatcagatgatccaattaggcaggttcaattctttacacgtgcaaaatttaatctgaattctgaaaagacagaacgaaaagcacatgcctgtcataagtgaagtacgttttcagatactgttcaaacatatgatttgtagtggcttgttcctaatcatgctgtactgtctactacctccgtcccaaaatatatctatttctagcacagtattttattctaaaataaagctatttttctacctaccttctcctctcaaccaatcacaaccattctttttcacctactttctcttttcaaccaatcacacaccttcttcaatcattctcatatattttcttaatacctgtgccaaccttaaaaatgcttatattttggtatggaggaagtatctctttaatgagacacactatccaccaattaaaaaaaatccgtagtcaggcctgccagggcttgcttctctacacgtacttcgatccaaattaagagaggaatcatctgtaggacggggatagtcgatctttttatactggtttttatactgtaccaaaataaacctgaaaactaattgaaagagatgtgtagtgtagatgggttcacaacttcacatactatatatatgtcttaattaatttatacttatgtatatcctacctaggacattcaaacaatgccaatgtaatttcttcactgtagggaattaattgtaccgatattgaatggcatgcatgcaatgcatcacatagtttagtagcagtctagctctcaactttcacatagctaacttgattttattagcatttcattaaccgttcacatatattcaatgacaaacatatatagatgaatgagattgagagaggattgaagaatctatgcatgcatatataatcccagaattaagaaaacctaatgcacgcataatttggattaagcaaaaattaagctgaattaatagaactaacctgcccaatgcaaagatcgaagctgaacaggccgccgcggctactgcgcggcggtgggccggtcgccgccgccggcggtgccgggcttgaggaacgtcccgccgccgagcggcccgagcccggacatcggcccgccggcgccgcccatggcggacgagtacccgaactcgtagccgccgccgccgctcacgttcacggcgccgccgagcctcgccaccgcgctctcgccgtcgtagctcctggccagcatctgcacggcggagaactggtggtggtcgttcacgaacccaccgcccgcccccccgccgacgccgatcgccgccgccgccacgccgccgccgctgatgaagttctgcgtgcagttcggctgcaccgcgctcccgatgaagtgatccgccatcgccgccgccgccgccgcctgcccgttcgacgacgacaccgccaccgccgcctgcacacagatcacaaacaccacacgatcagatcaagctacacataataaacactagctagctagctatatataattgattgattgattgtgatttgtgacctggtacttggagagctcgaagcgggcgcgggagaggtcttgctggagctggcggagctggtgctggaggacggagatgacgccgacgcagccgtagacggggtcgcggaggcgcatgtcggcctcgtacgccagcgagttcaccgcgtcctcccgctggtaagggtggagctcattcagcagcttggtcacgttgctcgcgccgaacacccggtgcacgtgcacgaacttctgcgggttgtccggcgggaagtagggcgcgaacacgcagtccggctggcacttgcgccgcaggaacttgcacgccgcgcacggcgaccccgtcccgccgccgccgccgccggagctcgcgcccaccgccggcgacgaggagacggtgatcaccgagccggacgacagcggcaacgacgacgccgacgacgaggccgccatcgatcgatcgatccggcttctgatcctg
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| CDS seq | atggcggcctcgtcgtcggcgtcgtcgttgccgctgtcgtccggctcggtgatcaccgtctcctcgtcgccggcggtgggcgcgagctccggcggcggcggcggcgggacggggtcgccgtgcgcggcgtgcaagttcctgcggcgcaagtgccagccggactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtgcacgtgcaccgggtgttcggcgcgagcaacgtgaccaagctgctgaatgagctccacccttaccagcgggaggacgcggtgaactcgctggcgtacgaggccgacatgcgcctccgcgaccccgtctacggctgcgtcggcgtcatctccgtcctccagcaccagctccgccagctccagcaagacctctcccgcgcccgcttcgagctctccaagtaccaggcggcggtggcggtgtcgtcgtcgaacgggcaggcggcggcggcggcggcgatggcggatcacttcatcgggagcgcggtgcagccgaactgcacgcagaacttcatcagcggcggcggcgtggcggcggcggcgatcggcgtcggcgggggggcgggcggtgggttcgtgaacgaccaccaccagttctccgccgtgcagatgctggccaggagctacgacggcgagagcgcggtggcgaggctcggcggcgccgtgaacgtgagcggcggcggcggctacgagttcgggtactcgtccgccatgggcggcgccggcgggccgatgtccgggctcgggccgctcggcggcgggacgttcctcaagcccggcaccgccggcggcggcgaccggcccaccgccgcgcagtag
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| Protein seq | MAASSSASSLPLSSGSVITVSSSPAVGASSGGGGGGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDLSRARFELSKYQAAVAVSSSNGQAAAAAAMADHFIGSAVQPNCTQNFISGGGVAAAAIGVGGGAGGGFVNDHHQFSAVQMLARSYDGESAVARLGGAVNVSGGGGYEFGYSSAMGGAGGPMSGLGPLGGGTFLKPGTAGGGDRPTAAQ |
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| Function | LOB domain-containing protein 6 [UniProtKB/Swiss-Prot:Q32SG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0017180 | OsLima_05g0017180.01 | Chr05 | 21410246 | 21413875 | - | NAM | ||
| CDS seq | atggcggcctcgtcgtcggcgtcgtcgttgccgctgtcgtccggctcggtgatcaccgtctcctcgtcgccggcggtgggcgcgagctccggcggcggcggcggcgggacggggtcgccgtgcgcggcgtgcaagttcctgcggcgcaagtgccagccggactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtgcacgtgcaccgggtgttcggcgcgagcaacgtgaccaagctgctgaatgagctccacccttaccagcgggaggacgcggtgaactcgctggcgtacgaggccgacatgcgcctccgcgaccccgtctacggctgcgtcggcgtcatctccgtcctccagcaccagctccgccagctccagcaagacctctcccgcgcccgcttcgagctctccaagtaccaggcggcggtggcggtgtcgtcgtcgaacgggcaggcggcggcggcggcggcgatggcggatcacttcatcgggagcgcggtgcagccgaactgcacgcagaacttcatcagcggcggcggcgtggcggcggcggcgatcggcgtcggcgggggggcgggcggtgggttcgtgaacgaccaccaccagttctccgccgtgcagatgctggccaggagctacgacggcgagagcgcggtggcgaggctcggcggcgccgtgaacgtgagcggcggcggcggctacgagttcgggtactcgtccgccatgggcggcgccggcgggccgatgtccgggctcgggccgctcggcggcgggacgttcctcaagcccggcaccgccggcggcggcgaccggcccaccgccgcgcagtag
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| Protein seq | MAASSSASSLPLSSGSVITVSSSPAVGASSGGGGGGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDLSRARFELSKYQAAVAVSSSNGQAAAAAAMADHFIGSAVQPNCTQNFISGGGVAAAAIGVGGGAGGGFVNDHHQFSAVQMLARSYDGESAVARLGGAVNVSGGGGYEFGYSSAMGGAGGPMSGLGPLGGGTFLKPGTAGGGDRPTAAQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0417000 | RBH | 0.185601 | 0.000000 | 0.914874 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34450 | RBH | 0.000000 | 0.000000 | 0.260381 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0417000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017290 | RBH | 0.115696 | 0.0 | 2.098301 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017290 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017110 | RBH | 0.000000 | 0.0 | 1.960467 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017120 | RBH | 0.060952 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017340 | RBH | 0.000000 | 0.000000 | 3.564648 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0312500 | RBH | 1.0912825 | 0.014226 | 7.291207 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016830 | RBH | 0.000000 | 0.0 | 0.338691 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0321900 | RBH | 2.0955875 | 0 | 6.022084 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017070 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017200 | RBH | 3.921356 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017220 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017270 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G016770 | RBH | 0.0 | 0.0 | 1.204383 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017080 | RBH | 0.0 | 0.0 | 0.672017 |
