Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0037510 | OGI:01105440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:36805191-36811193 | ||||||||
| Gene Symbol | CIPK11, OsCIPK11, OsMSURPK2, MSURPK2, OsSnRK3.7, SnRK3.7, - | ||||||||||
| DNA seq | taaagatgatcaacaaggataaggtcatgaaagttgggctaatggagcaaataaagagggagatttcaattatgagattggtgaaacatccaaatgttcttcagttatttgaggttatggctagcaagagcaagatttattttgttctggagtatgctaaaggtggtgagcttttcaacaaaattgctaaggagggaaagctcagtgaggattctgcgaggagatatttccaccaattgatcaatgcagttgactattgccatagtcgaggtgtttatcatcgtgacttaaagcctgaaaatctgctcctagatgagaatgaaaaccttaaagtctcagattttggtttaagtgccctggctgagtccaagaggcaagatggtctcctgcatactacatgtggaactccagcttatgttgctcctgaagttcttagcaggaaaggctatgatggtgcaaaggcagatgtatggtcttgtggagtaattttgtttgtgcttgtggctggttaccttcctttccatgatccaaatttgatagagatgtacagaaagatttgcagagcagacttcagatgccctcgttacttttctgctgagctgaaggatcttatacataaaatccttgattcagatccaagtactaggatttctatcccaaggataaAGagaagtacttggtacagaaaaccagttgaaataaatgctaaaaacagtgaggcagccacaacaaacagcatctcttcaggtgtagctacaacctcaggttctgcagagtgcagcacttctgaggaaaatcaagggtccttaagcctcccaaacctgaatgcatttgacataatttctctctcaacagggtttaatctatctgggttttttgaggatatgcatggtcaccaggaagaacggtttaccactaggcagcctgtgacaacagtacttggaaagctgaaggaattggccaaacgcctgaaactaaaagttaagaagaaggataatggagttttgagattggcagcaccaaaggaaggaaagaagggctttcttgaacttgatgcagagatttttgaggtcaccccttcattcctcttagttgagttgaaaaagaccaacggggatactatggagtatcgaaagctggtcaaagaagatataaggccagcactcaaggatattgtttgggtgtggcaaggtgatgagcacctgaactcacaatctatcctgcaaggagagcagcagcagtccccattgccaccagagctaccacaggatcagttgcaaccatcattgccacaacaggagaagcaggacatgcctgaaccaccgttgttgccacaagtaccacaagaagaagtgcaaacatctatccccgcagaacaaacaaagaattagttttaacagccaactggtaattcaaatgttcttgtcatccatgtttgtatccttcttttatgtctttgctgcttgtttctaattcctctggaattgcaaagctgtacCTGTTTGTACAGAAGTGCAATGCACTTCAATTTTGGAAACTACAAAGGAACACCTCCGAGTGTTACTCCTGAATTTTCGAAAGAGAAACAATCATTGATGAGAAGTATTGAACCGTAGAAGTTTTTGGTGATGGGGACGTCTTTGGATTTTTCCCTCTTCACTGTGAACAGTTTTGGAGTTTTGGTCTTTGGTTTTAATGAGCGTATTTTAGGTTTGTTGAAAATTTTGTTGACTGGTCCCTTTATTTCTTCCTTGGATAGCCGTCTACTCGCTTATGTCTGTCATGGACTGTTTTCAATAAGAAATCAATTCAACATTTTTGCAAGTGAATCCACATAACTAGCTTTCTTTCTTATTCTAGGTGGCTGTTCTTTGCAAAGGAGAATCGACATTATATTATTTCTATACGTAGAAGTGATTATAAATCCGAGGAAGAAAACATACTAGTAGGTTTTACTGAAAATATCCATGCTTttttgattgtttgagaaaatctcatgtggttttttaagaggttctgaacatcatacattcgcagtttttttatgtagcagaaacctttattacctcatgaagaaatctctacaatggtcagaatttcaaatacattttctatttagcatctagatttccatcatctatgtgaagcaggtcaacgcctcaactgggaatcacaatgaccattggttggtccattggttgatgatgaaacctttcaggtttcctgtgagctttcggagaagaccctgctcaagtctccccacaacagactagcattgtagtcaacggggatcccaactcttagaaaagctccggtaagccattacacaagatcattttagtgcacccatagacccactctctccttgctggcatcgacgggcgcagaagaactgattcgatctatatttgcaacatgagcggggaagtcgaattaggacagccgttgcgggtaattaccttgacctctcttttaagttccattcttgttgctccagtaaggaatgcctaggctacggacaatttagagactagatttcctataacaatggatattgctaatcagtatgttgtgaggtacaatttccattacagcatatcaatttcaccatgtaaatgccatgttttttctttgacttcccctgttgtgcttaatttggtGgggaataagactgagccgttgtatgtaaggattatgaatccctaattgttggcatctcctgtcgatttcttgcactgtccgcagttgcgcatcgtctcaactcgctagtctaatgccttgctgaagttggttgaagacttgaatggattgccctttgttgatgagctgactttccatgcattcccgtactgtttgcaggccccagattctgtaccaagtacaggaagagacgaggaagaagggtcgtcgcaccatggaaatggctcaggcgcagccagagagaacccagagaacccattgccggacctggcgctggcgaaatccgagtcagaccggataaaagccttttaccagacggtcctctcggccattgtcgtgttcatcgtggcggcgctgtcaggatacaaggacatgaagccgctctactcgaccacaaatcacaagaaagttcacctcagcaacctccttgtcatcgaggggttctgcatgattgctaccttcatatgcgcggctgttttgatgatgtacgagttctacacgtaccaccatgagatcgcccgcgaggtcgtcgcaggtgcagggacctcaccgtcctcatcgcggtcgccggagcgatgctggttgcgacggacacgatcctcgtcgtcatcgccaacagggacaacgcggtgttcgccgttcttttcgtgccggtgctgctgttagtcggcatggctgtgtacaccggagcatcgatggaggagcagccgccgaactcgccgcacgacggcgggtacgatgaggcaaccaaaagcacctttgatctggccaccgttagtacaatggctgcattgggtttgcaggggaccatcgtcttcggctacctgaaaacgcccgagaagaagagcgaacatgatgaccctccactggacctcgccgtctgctacatcgcctcgacggtctgcctgaccgtcatggcggtttgcgccatccgctggctcttctccccgaagaaaagcggaaggctctggtcggaatcatcggcagcctcaggcacgtcctgctcgcctctctggcgctgatggcggcggttgtctccgtcgagttcttggacggcttcgtcgtgctctccgtctggccggaggccgtcgcgctggtgctgtactacgcggcacagctctgctcggggcggcagcccgggggaggagtcgggagccggccatggatcgaatttgtcttccggattgtcgccaccgccgggttcacgctcatggccgggctgtacgcggcgttcctcgggaccaaccactacagcgtgtacctcaaggccgccatgctcgtgctcctgatggcagttctctcgagcctcagccgtctggcgaacccggtttacatgcccgagatcgacggagctctccttgagttctgcgtcgccggcgtggcgctcgccttccccgccgtgtcgcttctggttgcttgtcccttggtgtttaaggtcttcgttgacctatatattcatcatagttctctttgaaccaaggaggtgggtggaaccatggtactccctccggcccataatataaaggatttttagtttttatttgaactgtttgaccgctcgtcttattcaaaattttttgaaattattatttattttttttgacttactttattatccagaatactttaagcacaattttttgggttttatatttgcataaatttttttaataagatgagtcgtcaaagagtgcaataaaaaactcaaaatcgttatattatgggacggagggagtaagttactaggtttggtgaggccgtgaggtttCccatctgcttgctgttcggacatagagcaaggataacattagcaagacatactccctccgtcttaaaatataacaacttttagctctccggatttgtcctaaaatataacaacttttctagcaatattctcttCccaatcaatcacaacccttcaccattcacttttcccacctatcttcactactcattcaatcacaaccctccaccattcacttctatctacttttttaataaccatgtctaactctaaaatttcttatattctgggacggaggaagtagtaagttattagcaactaaaaatgtagagcgttggttctcatgtaataacaatctacatttgctccgtgatacatacattttaaatctattaacttattaaaggaacagaaaaaggagcatccatgttctctctcacggcctagaaattatcatattaattgaagaaatagaaaaacagagtccatgtagaaatacaatttttaaatagttgaaattcggaattaaaaaataaggaatattgaaagaggagactagagtccatatagaaatacaatttataaataactgaaattcggaattaaaaaataaagaatattagaagaagggtatagagtccatatagaaatacaattaagaaataatagaaatttggaattaaaaataagaaatacttatagaaatacaattaataaataatataaattcggaattaaaaataaggaatattagaaatagagtatagagtacatataggaatttaaaactaactaaaatttgaaataaacataataaaattaaaagtagagaatccatataagaataccatttagacgtaactgtaattcgaaattaaaaattaaaaaatattgaaagatgagtttagagtccacatagaaatacaattagaaataataaaaattcagaattaaaaataaataatataggaagaagagcctagagtctatatagtaatacaatttacaaacaatgaaatttccgaattaaaaataaagaatattggaagacgagtctagaatccatataggaatacaatttagaaataactaaaattttatattaaaaataattaataactatcacgtatatacaatacggtatgaatattacacaatggtagtttggtaaagttagtaaaaaatttaaaattatgtcatcatttcaatatattttaataataaattgagaaaacatatatgctattatataatagaaaatataatcatgccagccgcgtaatctatgtgggccaccatgctagttcatgcatagtaagaaaaagagggttggctgacctcagggtgtccgtgtcgctcccaccctagggtgacactgacaGggggtgacatggacagcgaccaaagatccgccgccgcccatccttcctcctccttcggccttgcagccgcccgaaaggccaccggcaaagccgactggctccaaggactacgatgacggggcttcgtattcccccgagggtgccattctggcaggtggttctgaggcgacctaa
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| CDS seq | atggcggcggttgtctccgtcgagttcttggacggcttcgtcgtgctctccgtctggccggaggccgtcgcgctggtgctgtactacgcggcacagctctgctcggggcggcagcccgggggaggagtcgggagccggccatggatcgaatttgtcttccggattgtcgccaccgccgggttcacgctcatggccgggctgtacgcggcgttcctcgggaccaaccactacagcgtgtacctcaaggccgccatgctcgtgctcctgatggcagttctctcgagcctcagccgtctggcgaacccggtttacatgcccgagatcgacggagctctccttgagttctgcgtcgccggcgtggcgctcgccttccccgccgtgtcgcttctgccgcccgaaaggccaccggcaaagccgactggctccaaggactacgatgacggggcttcgtattcccccgagggtgccattctggcaggtggttctgaggcgacctaa
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| Protein seq | MAAVVSVEFLDGFVVLSVWPEAVALVLYYAAQLCSGRQPGGGVGSRPWIEFVFRIVATAGFTLMAGLYAAFLGTNHYSVYLKAAMLVLLMAVLSSLSRLANPVYMPEIDGALLEFCVAGVALAFPAVSLLPPERPPAKPTGSKDYDDGASYSPEGAILAGGSEAT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0037510 | OsLima_01g0037510.01 | Chr01 | 36805191 | 36811193 | + | NAM | ||
| CDS seq | atggcggcggttgtctccgtcgagttcttggacggcttcgtcgtgctctccgtctggccggaggccgtcgcgctggtgctgtactacgcggcacagctctgctcggggcggcagcccgggggaggagtcgggagccggccatggatcgaatttgtcttccggattgtcgccaccgccgggttcacgctcatggccgggctgtacgcggcgttcctcgggaccaaccactacagcgtgtacctcaaggccgccatgctcgtgctcctgatggcagttctctcgagcctcagccgtctggcgaacccggtttacatgcccgagatcgacggagctctccttgagttctgcgtcgccggcgtggcgctcgccttccccgccgtgtcgcttctgccgcccgaaaggccaccggcaaagccgactggctccaaggactacgatgacggggcttcgtattcccccgagggtgccattctggcaggtggttctgaggcgacctaa
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| Protein seq | MAAVVSVEFLDGFVVLSVWPEAVALVLYYAAQLCSGRQPGGGVGSRPWIEFVFRIVATAGFTLMAGLYAAFLGTNHYSVYLKAAMLVLLMAVLSSLSRLANPVYMPEIDGALLEFCVAGVALAFPAVSLLPPERPPAKPTGSKDYDDGASYSPEGAILAGGSEAT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.189340 | 0.039605 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0824800 | SBH | 0.000000 | 0.504450 | 0.400751 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60930 | SBH | 0.000000 | 0.287206 | 0.087326 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0824800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038600 | RBH | 0.588644 | 11.233960 | 1.913005 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038090 | RBH | 0.159982 | 2.096066 | 0.873795 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038500 | RBH | 0.0 | 7.930498 | 4.249253 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037950 | RBH | 0.026639 | 0.200722 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037600 | SBH | 0.726466 | 9.341597 | 3.047870 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0582800 | RBH | 2.3120555 | 3.1474785 | 5.707858 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0037300 | SBH | 0.037037 | 0.081773 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0578800 | RBH | 2.156172 | 0.8501245 | 5.241934 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037560 | SBH | 0.0 | 19.178650 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037790 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037790 | RBH | 0.211221 | 0.551794 | 0.792159 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037640 | SBH | 0.0 | 2.798503 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G038120 | RBH | 0.180273 | 1.181057 | 1.335590 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037800 | RBH | 0.177530 | 3.134089 | 2.950346 |
