Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g60930 | OGI:01105540 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:35243884-35246808 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATTGTTTTTCTATGTTGACTAGAGTCCAGAGAGAGTTTAGTCGTCCCCTGCATTTCCCCATCTCCTCCTCTGAGCAACTATATCGAGTTTCGACTACCATCTCAGCTTCGGTCTCGTATTCTCGTGGATCATCGGAAAGATGATCTCTACGGAAGAGGACTCTGATTCTTTTCAGGTAAAGAGAAGAGATCTCTTTTATCTTGCTTCGTGCTTGTTTTGTTTGTAGCTTTGTACCAATCTTTTCGTCCAATTTCATGGATCTAGACCAAAATTTTCGTGTTCCTAATTAGTTTCTTTTCATGATTGTTTTATGATGCAAATCTAACTGCCATGTCAATTGTTTTATCGTTAGTAAATTTCTTATTGTTCGCGTCCGTGCTTTTGAAGCTAACAGCATGATTTTTTTTTCGAACGCAGCTAACAGCATGATTTGGCTAGTCCTTTAAAACATGTGTATAAAAATCATATGTACATATATTTTGAACAAAGTCACCTCTTGTTAAGAGAGATTCTAATGATATAAATTATTTTAAGTTATTTGCTTATTAGACTCTGCCGAGATGCTGAAGTAACTTGCATAAAGCCGATAAGTAGAGAAAGGAGTACAGAAAAAAAAATCAAGATCTAAACTCTGTTAGCATGGATCATGGACCTGTTTGAAATACTGTACAGACAACTCTGACAAAATTAGTTAACCAGTAGTACAGCTTTCTTTTCTTAGGAAAACAACTTTCTTTTCAGAGAGTTTCATGTCTTGTTACCAATTTCTGTTTGATTCCATCTCTGACATATATTCAGTGTGTTGGGACTTCGAGACCACAGCAAAATACTACTTGGGCAGCTTTCTAATAGTACTAGATTTAGCTAATAAGAGACCATTTGTGGATCTAATCGCCTTCTGAAGGCGATTAGCTAGTTTTACTCGGGAGATAAAACATGGAAATAACTGAGAAACATAAAGCCTCCGCCGGCCATTCCCGTTAACCATTTCCGCTCTTTCTTCTTAATCTGCCTGTGGGCAGGCACGATGTGGTGTTCAGACATCTTCAACGACTTCTTCGTCGGTGTATCGATGATGCTTTCTTATGGGTTTAGCATTTAAAGTGCTAAGATAGAATTGTCCTCATAGCCTGGAAAAATATTCTATTGTTCTCTCCCGGCCCCAAAACTCTGCTAATCTGTTATGGCAAAGCTGTTGGTTTATGCCTGAACTCTGATAGCCTGTAACCCGTTACTCACTTTTCAATGGAAAATTCAGGTGGAGAAACTCTTACCCTCGAGTGATTTACTCCCAAAAAAAAATGGAAATAACTAGTGATAATTTTTTTTAACCCTTCCCAGGATGACAGCGAGGAACTGCAAATGCAGGTGACAAAGAAGACGTTGAAGCGTGTCATATCACTAGCCGAAACCTTCATCGCCATAGCAACCGGCATCCTCGCGGCAGCTTTCTCGGCAGGCAAAGATGTCCACCTGCACCGCCACGTCCTGGCCGCCGGCGGCTGCTTCCTCGTCGTGACATACCTGTCCGCTCTCCTGCTCATCTACATGAAGCTGTTCTTGTCAGATCACAGGCGGCTGCGCCGATGGCACGTCCGGTCCCTGCAGCTCCTGTGCGTGACCAGCGGCGCGTCGCTCGTCGCCACGAACTCCCTGCTCCTCGTCCTCATCGGCGAAGGCAATGGCTTGCTGTCGCTCAACCTGCTGCCCGTGCAGGGCATCGTCGGCGTGCTCGCGTACCACGCGACGCCGACGGAGGGGAGCGCGCGCGACGAGGCGTTCGAGGCGCAGGTCAAGAGCGCCCGCAAGGTCGCGCTGTTCGCGGCGGCCACGGCCTTCGCCGTGCAGACCACGCTCGTGTTTGGCGCGTTCAGCAACGCCGCCCTGCAGGCGATGGGCGGACGCCGGCTGGACCTCTCGGTGTCGTTCCTGGCGTCGGCGCTCAGCGTGTTCTTGGTCGTGGCGACGTGCATGCCGCTCGGGTTCAGGAACCAGGGCGCCAGGGACAAGGTGCTGTCCATCGTGAGGTACCTCAAGAAAGGCGTCATGGCCGTGCTCGCGGTCACCGCGGTGACTCTCGGCCAGGAGTTCCTCGGTGGCGCCGCGGCGCTCGCGCTCTTCCCGGAGATCACCGTCGCCGCCATGTACTACGCCGTGAGCATGCCCGCCGACGAGGCGGCCGCGGCCGCTGACCGCAAGATGGAGGTGCTTCCGACCGTCGTCGTGGCGACGTTCGGCTTCGGGATGCTCGGGGCGGCGTACGCGGCGCTGTTCGGCACGCCGGAGTACGACCTGTACACCAAGGCCCTGGCGTTCACCCTGCTCACCGCCGTCGTGTCCAGCCTGGGCCGCGTGGCGGGGCCGCTCTGCAACGCCCAGCGTGACAAGAGCTCGGCGGCGTGGGTGACATTCCTCAGCAGCATCCTCCCCATCGTGGAGATGCTGGTCGCCGTCCCGCTCGCCGCCAAGGTAATGGTTGATTTTCTCGCCGTTCCTGGTAATGGCTGATTTTCTCGCCGTGCACTCACTAGCACTTGATGTCTTGATCACTTGTACAAATTCTTCGAACACGATACGTGCATACTCTGACACGCACCATGTTGTTGTTGTACTTTACTGACTTTGTACAATGTCATGTACTTATAGTAGTGGACCTCTCTTGGACACCCTGAAGAGCACATATTTTTTGTGTGATTTTGTCTGAAATAGTACTGCTAGGAGTAGTATTTGCCGCAGCAGCATTGCGGAGTTGCCAACGCCTCGAAGGTATTCATGGGCTTATTAGATTGATGGGCTGTTTTGTACAGACAATCACGGCCCCGGTTGGCTGTCAGCCTATAACTCCATCAGATTGTGTGGTTTTGGTTTAAAAGAAGAGCAATTTTACAATTCGAGGTACCATGAGGTACCATTTTTTTATTGTA
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| CDS seq | ATGATCTCTACGGAAGAGGACTCTGATTCTTTTCAGGATGACAGCGAGGAACTGCAAATGCAGGTGACAAAGAAGACGTTGAAGCGTGTCATATCACTAGCCGAAACCTTCATCGCCATAGCAACCGGCATCCTCGCGGCAGCTTTCTCGGCAGGCAAAGATGTCCACCTGCACCGCCACGTCCTGGCCGCCGGCGGCTGCTTCCTCGTCGTGACATACCTGTCCGCTCTCCTGCTCATCTACATGAAGCTGTTCTTGTCAGATCACAGGCGGCTGCGCCGATGGCACGTCCGGTCCCTGCAGCTCCTGTGCGTGACCAGCGGCGCGTCGCTCGTCGCCACGAACTCCCTGCTCCTCGTCCTCATCGGCGAAGGCAATGGCTTGCTGTCGCTCAACCTGCTGCCCGTGCAGGGCATCGTCGGCGTGCTCGCGTACCACGCGACGCCGACGGAGGGGAGCGCGCGCGACGAGGCGTTCGAGGCGCAGGTCAAGAGCGCCCGCAAGGTCGCGCTGTTCGCGGCGGCCACGGCCTTCGCCGTGCAGACCACGCTCGTGTTTGGCGCGTTCAGCAACGCCGCCCTGCAGGCGATGGGCGGACGCCGGCTGGACCTCTCGGTGTCGTTCCTGGCGTCGGCGCTCAGCGTGTTCTTGGTCGTGGCGACGTGCATGCCGCTCGGGTTCAGGAACCAGGGCGCCAGGGACAAGGTGCTGTCCATCGTGAGGTACCTCAAGAAAGGCGTCATGGCCGTGCTCGCGGTCACCGCGGTGACTCTCGGCCAGGAGTTCCTCGGTGGCGCCGCGGCGCTCGCGCTCTTCCCGGAGATCACCGTCGCCGCCATGTACTACGCCGTGAGCATGCCCGCCGACGAGGCGGCCGCGGCCGCTGACCGCAAGATGGAGGTGCTTCCGACCGTCGTCGTGGCGACGTTCGGCTTCGGGATGCTCGGGGCGGCGTACGCGGCGCTGTTCGGCACGCCGGAGTACGACCTGTACACCAAGGCCCTGGCGTTCACCCTGCTCACCGCCGTCGTGTCCAGCCTGGGCCGCGTGGCGGGGCCGCTCTGCAACGCCCAGCGTGACAAGAGCTCGGCGGCGTGGGTGACATTCCTCAGCAGCATCCTCCCCATCGTGGAGATGCTGGTCGCCGTCCCGCTCGCCGCCAAGGTAATGGTTGATTTTCTCGCCGTTCCTGGTAATGGCTGA
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| Protein seq | MISTEEDSDSFQDDSEELQMQVTKKTLKRVISLAETFIAIATGILAAAFSAGKDVHLHRHVLAAGGCFLVVTYLSALLLIYMKLFLSDHRRLRRWHVRSLQLLCVTSGASLVATNSLLLVLIGEGNGLLSLNLLPVQGIVGVLAYHATPTEGSARDEAFEAQVKSARKVALFAAATAFAVQTTLVFGAFSNAALQAMGGRRLDLSVSFLASALSVFLVVATCMPLGFRNQGARDKVLSIVRYLKKGVMAVLAVTAVTLGQEFLGGAAALALFPEITVAAMYYAVSMPADEAAAAADRKMEVLPTVVVATFGFGMLGAAYAALFGTPEYDLYTKALAFTLLTAVVSSLGRVAGPLCNAQRDKSSAAWVTFLSSILPIVEMLVAVPLAAKVMVDFLAVPGNG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g60930 | LOC_Os01g60930.1 | Chr01 | 35243884 | 35246808 | + | MSU_osa1r7 | ||
| CDS seq | ATGATCTCTACGGAAGAGGACTCTGATTCTTTTCAGGATGACAGCGAGGAACTGCAAATGCAGGTGACAAAGAAGACGTTGAAGCGTGTCATATCACTAGCCGAAACCTTCATCGCCATAGCAACCGGCATCCTCGCGGCAGCTTTCTCGGCAGGCAAAGATGTCCACCTGCACCGCCACGTCCTGGCCGCCGGCGGCTGCTTCCTCGTCGTGACATACCTGTCCGCTCTCCTGCTCATCTACATGAAGCTGTTCTTGTCAGATCACAGGCGGCTGCGCCGATGGCACGTCCGGTCCCTGCAGCTCCTGTGCGTGACCAGCGGCGCGTCGCTCGTCGCCACGAACTCCCTGCTCCTCGTCCTCATCGGCGAAGGCAATGGCTTGCTGTCGCTCAACCTGCTGCCCGTGCAGGGCATCGTCGGCGTGCTCGCGTACCACGCGACGCCGACGGAGGGGAGCGCGCGCGACGAGGCGTTCGAGGCGCAGGTCAAGAGCGCCCGCAAGGTCGCGCTGTTCGCGGCGGCCACGGCCTTCGCCGTGCAGACCACGCTCGTGTTTGGCGCGTTCAGCAACGCCGCCCTGCAGGCGATGGGCGGACGCCGGCTGGACCTCTCGGTGTCGTTCCTGGCGTCGGCGCTCAGCGTGTTCTTGGTCGTGGCGACGTGCATGCCGCTCGGGTTCAGGAACCAGGGCGCCAGGGACAAGGTGCTGTCCATCGTGAGGTACCTCAAGAAAGGCGTCATGGCCGTGCTCGCGGTCACCGCGGTGACTCTCGGCCAGGAGTTCCTCGGTGGCGCCGCGGCGCTCGCGCTCTTCCCGGAGATCACCGTCGCCGCCATGTACTACGCCGTGAGCATGCCCGCCGACGAGGCGGCCGCGGCCGCTGACCGCAAGATGGAGGTGCTTCCGACCGTCGTCGTGGCGACGTTCGGCTTCGGGATGCTCGGGGCGGCGTACGCGGCGCTGTTCGGCACGCCGGAGTACGACCTGTACACCAAGGCCCTGGCGTTCACCCTGCTCACCGCCGTCGTGTCCAGCCTGGGCCGCGTGGCGGGGCCGCTCTGCAACGCCCAGCGTGACAAGAGCTCGGCGGCGTGGGTGACATTCCTCAGCAGCATCCTCCCCATCGTGGAGATGCTGGTCGCCGTCCCGCTCGCCGCCAAGGTAATGGTTGATTTTCTCGCCGTTCCTGGTAATGGCTGA
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| Protein seq | MISTEEDSDSFQDDSEELQMQVTKKTLKRVISLAETFIAIATGILAAAFSAGKDVHLHRHVLAAGGCFLVVTYLSALLLIYMKLFLSDHRRLRRWHVRSLQLLCVTSGASLVATNSLLLVLIGEGNGLLSLNLLPVQGIVGVLAYHATPTEGSARDEAFEAQVKSARKVALFAAATAFAVQTTLVFGAFSNAALQAMGGRRLDLSVSFLASALSVFLVVATCMPLGFRNQGARDKVLSIVRYLKKGVMAVLAVTAVTLGQEFLGGAAALALFPEITVAAMYYAVSMPADEAAAAADRKMEVLPTVVVATFGFGMLGAAYAALFGTPEYDLYTKALAFTLLTAVVSSLGRVAGPLCNAQRDKSSAAWVTFLSSILPIVEMLVAVPLAAKVMVDFLAVPGNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.287206 | 0.087326 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0824800 | RBH | 0.000000 | 0.504450 | 0.400751 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0824800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0038620 | RBH | 0.0 | 2.112167 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0038120 | SBH | 0.0 | 0.804204 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038530 | SBH | 0.0 | 2.512633 | 0.263261 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037980 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0037600 | RBH | 0.726466 | 9.341597 | 3.047870 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0583500 | RBH | 0.81408 | 21.587017 | 0.06106 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0037300 | RBH | 0.037037 | 0.081773 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0579600 | RBH | 1.512694 | 31.4953775 | 0.0864545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0037540 | SBH | 0.0 | 0.096544 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0037560 | SBH | 0.0 | 19.178650 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037790 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037810 | RBH | 0.0 | 0.365023 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0037640 | SBH | 0.0 | 2.798503 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G038150 | SBH | 0.207590 | 0.0 | 0.452655 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037830 | SBH | 0.000000 | 13.366194 | 0.0 |
