Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g39860 | OGI:05063660 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:23426645-23428051 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATTAACGTGCCCGAAGTAGAAATGTACAAAGATTTTGACAAACAAAGGGATGGCGATCACCAACGCGAGGCCGGGGAAGACGAGCGACACCGCGCCGGCGGCCACCGCCCACCAACCCCTCGCCCTCGACCGCCCGAACGGCCGCAGCATCTGCCTCAGGCTCGACACCACGGCGGTCAGCATCACCAGCATGGCCGCCCTCAGGTACACGTCGTACTTCTTCTGCCCTAGGTACACCGCGTACGTGCCCGCCATGAGCGTGAAGCTCGTGGTCGCCACGGCCCTGAACCCCTTCGCCCTCCTCTCTCTCGCCCCCGCCGATGCCGCTGCCGCCGCCGCCTCAACGCTGCCGTCGACGACGTTTGCGCCGCCTTCGGTCGTCCACGCCATGATGGCGACGTTGAGCGCGACGGCGATGGCCTCCGGGAGGAGGGAGAGCATGAACCACCACTGCAAGAACTCGACGGCGAGGATCGTGGCCATCGAGACGAGCGCGGCGAGCATCGCGCGGTTGAGGTGGCCGGCGACCGCGACGGCGCGCGCCCTGGCTGACGGGAACAGGGTGCGCACGGGCAGCGCGGTGGCCGCCATGGCGAGCACGGACACCGTCGAGGCGAAGGACGCCACGGCGAGGTCCACCTGCGCCGGCGGCGAGCGGCCGCAGCCATCGAGCGACGAGGGGTACTTGAGGTAGCCCAGGATGAGAGCCCCTTCGATGGCGAACGCCGCCGTGGCGCCGAACGTCGCGAGCTCGGCGCTGCTCTTCATCGCCTCCTCGTAGGCCTCGTCCTGCGCCACCGCGGCCGCCGTGACCGCCCCCTCCGTCGGCGGCAGGTCGGCGCCGGCGAGCATGCCGAGCACGAGCACGACGGGGAGGACAAGGATCACGAGCATGGTGTCGTTGTCCCTGTCCATGAGCGCGACGAACATCCCGTTGGTCGCGACGAGGAGGACGCCGGTGAGCGAGACGAGCACCGCCGACGAGAGGTCGGCGCAGCGGCTGCGCGGGGCGGCGGGCGGCTGGTGCATCTGGAAGTGCATCAGCACGACGGCGGAGACGAACGTGACGAGCAGCGAGAACCCGCCGGCCTTGAACAGGAGGGTGGTAGCGGCGCCCTTGCCGATGTCCTTGTAGCCGGAGACGCCGGCGACGATGGCGGAGCCGGTGATCCCGATGGCCTCCTTGCCGAAGGCGGTGGCTCGCTCGACCTGCGTGTCGTTGCGTTGCGGGAGGAGGTGTGCATGTGGCTGGTTTTCCATGGATGCTCTCGATCGTTGCCGTATTCGTGAAGACACCGTTTGGTTTGTAACTTTGGTTATATAGCAAACATAGCCAAACTAAACGGTGATCATCGCGTCGCGAGAAGGTTCAGAGAAATAGCAGGGAAAAACGAAAGAAAAGTA
More
|
||||||||||
| CDS seq | ATGGAAAACCAGCCACATGCACACCTCCTCCCGCAACGCAACGACACGCAGGTCGAGCGAGCCACCGCCTTCGGCAAGGAGGCCATCGGGATCACCGGCTCCGCCATCGTCGCCGGCGTCTCCGGCTACAAGGACATCGGCAAGGGCGCCGCTACCACCCTCCTGTTCAAGGCCGGCGGGTTCTCGCTGCTCGTCACGTTCGTCTCCGCCGTCGTGCTGATGCACTTCCAGATGCACCAGCCGCCCGCCGCCCCGCGCAGCCGCTGCGCCGACCTCTCGTCGGCGGTGCTCGTCTCGCTCACCGGCGTCCTCCTCGTCGCGACCAACGGGATGTTCGTCGCGCTCATGGACAGGGACAACGACACCATGCTCGTGATCCTTGTCCTCCCCGTCGTGCTCGTGCTCGGCATGCTCGCCGGCGCCGACCTGCCGCCGACGGAGGGGGCGGTCACGGCGGCCGCGGTGGCGCAGGACGAGGCCTACGAGGAGGCGATGAAGAGCAGCGCCGAGCTCGCGACGTTCGGCGCCACGGCGGCGTTCGCCATCGAAGGGGCTCTCATCCTGGGCTACCTCAAGTACCCCTCGTCGCTCGATGGCTGCGGCCGCTCGCCGCCGGCGCAGGTGGACCTCGCCGTGGCGTCCTTCGCCTCGACGGTGTCCGTGCTCGCCATGGCGGCCACCGCGCTGCCCGTGCGCACCCTGTTCCCGTCAGCCAGGGCGCGCGCCGTCGCGGTCGCCGGCCACCTCAACCGCGCGATGCTCGCCGCGCTCGTCTCGATGGCCACGATCCTCGCCGTCGAGTTCTTGCAGTGGTGGTTCATGCTCTCCCTCCTCCCGGAGGCCATCGCCGTCGCGCTCAACGTCGCCATCATGGCGTGGACGACCGAAGGCGGCGCAAACGTCGTCGACGGCAGCGTTGAGGCGGCGGCGGCAGCGGCATCGGCGGGGGCGAGAGAGAGGAGGGCGAAGGGGTTCAGGGCCGTGGCGACCACGAGCTTCACGCTCATGGCGGGCACGTACGCGGTGTACCTAGGGCAGAAGAAGTACGACGTGTACCTGAGGGCGGCCATGCTGGTGATGCTGACCGCCGTGGTGTCGAGCCTGAGGCAGATGCTGCGGCCGTTCGGGCGGTCGAGGGCGAGGGGTTGGTGGGCGGTGGCCGCCGGCGCGGTGTCGCTCGTCTTCCCCGGCCTCGCGTTGGTGATCGCCATCCCTTTGTTTGTCAAAATCTTTGTACATTTCTACTTCGGGCACGTTAATTAA
More
|
||||||||||
| Protein seq | MENQPHAHLLPQRNDTQVERATAFGKEAIGITGSAIVAGVSGYKDIGKGAATTLLFKAGGFSLLVTFVSAVVLMHFQMHQPPAAPRSRCADLSSAVLVSLTGVLLVATNGMFVALMDRDNDTMLVILVLPVVLVLGMLAGADLPPTEGAVTAAAVAQDEAYEEAMKSSAELATFGATAAFAIEGALILGYLKYPSSLDGCGRSPPAQVDLAVASFASTVSVLAMAATALPVRTLFPSARARAVAVAGHLNRAMLAALVSMATILAVEFLQWWFMLSLLPEAIAVALNVAIMAWTTEGGANVVDGSVEAAAAAASAGARERRAKGFRAVATTSFTLMAGTYAVYLGQKKYDVYLRAAMLVMLTAVVSSLRQMLRPFGRSRARGWWAVAAGAVSLVFPGLALVIAIPLFVKIFVHFYFGHVN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g39860 | LOC_Os05g39860.1 | Chr05 | 23426645 | 23428051 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAAAACCAGCCACATGCACACCTCCTCCCGCAACGCAACGACACGCAGGTCGAGCGAGCCACCGCCTTCGGCAAGGAGGCCATCGGGATCACCGGCTCCGCCATCGTCGCCGGCGTCTCCGGCTACAAGGACATCGGCAAGGGCGCCGCTACCACCCTCCTGTTCAAGGCCGGCGGGTTCTCGCTGCTCGTCACGTTCGTCTCCGCCGTCGTGCTGATGCACTTCCAGATGCACCAGCCGCCCGCCGCCCCGCGCAGCCGCTGCGCCGACCTCTCGTCGGCGGTGCTCGTCTCGCTCACCGGCGTCCTCCTCGTCGCGACCAACGGGATGTTCGTCGCGCTCATGGACAGGGACAACGACACCATGCTCGTGATCCTTGTCCTCCCCGTCGTGCTCGTGCTCGGCATGCTCGCCGGCGCCGACCTGCCGCCGACGGAGGGGGCGGTCACGGCGGCCGCGGTGGCGCAGGACGAGGCCTACGAGGAGGCGATGAAGAGCAGCGCCGAGCTCGCGACGTTCGGCGCCACGGCGGCGTTCGCCATCGAAGGGGCTCTCATCCTGGGCTACCTCAAGTACCCCTCGTCGCTCGATGGCTGCGGCCGCTCGCCGCCGGCGCAGGTGGACCTCGCCGTGGCGTCCTTCGCCTCGACGGTGTCCGTGCTCGCCATGGCGGCCACCGCGCTGCCCGTGCGCACCCTGTTCCCGTCAGCCAGGGCGCGCGCCGTCGCGGTCGCCGGCCACCTCAACCGCGCGATGCTCGCCGCGCTCGTCTCGATGGCCACGATCCTCGCCGTCGAGTTCTTGCAGTGGTGGTTCATGCTCTCCCTCCTCCCGGAGGCCATCGCCGTCGCGCTCAACGTCGCCATCATGGCGTGGACGACCGAAGGCGGCGCAAACGTCGTCGACGGCAGCGTTGAGGCGGCGGCGGCAGCGGCATCGGCGGGGGCGAGAGAGAGGAGGGCGAAGGGGTTCAGGGCCGTGGCGACCACGAGCTTCACGCTCATGGCGGGCACGTACGCGGTGTACCTAGGGCAGAAGAAGTACGACGTGTACCTGAGGGCGGCCATGCTGGTGATGCTGACCGCCGTGGTGTCGAGCCTGAGGCAGATGCTGCGGCCGTTCGGGCGGTCGAGGGCGAGGGGTTGGTGGGCGGTGGCCGCCGGCGCGGTGTCGCTCGTCTTCCCCGGCCTCGCGTTGGTGATCGCCATCCCTTTGTTTGTCAAAATCTTTGTACATTTCTACTTCGGGCACGTTAATTAA
More
|
|||||||
| Protein seq | MENQPHAHLLPQRNDTQVERATAFGKEAIGITGSAIVAGVSGYKDIGKGAATTLLFKAGGFSLLVTFVSAVVLMHFQMHQPPAAPRSRCADLSSAVLVSLTGVLLVATNGMFVALMDRDNDTMLVILVLPVVLVLGMLAGADLPPTEGAVTAAAVAQDEAYEEAMKSSAELATFGATAAFAIEGALILGYLKYPSSLDGCGRSPPAQVDLAVASFASTVSVLAMAATALPVRTLFPSARARAVAVAGHLNRAMLAALVSMATILAVEFLQWWFMLSLLPEAIAVALNVAIMAWTTEGGANVVDGSVEAAAAAASAGARERRAKGFRAVATTSFTLMAGTYAVYLGQKKYDVYLRAAMLVMLTAVVSSLRQMLRPFGRSRARGWWAVAAGAVSLVFPGLALVIAIPLFVKIFVHFYFGHVN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60930 | RBH | 0.000000 | 0.287206 | 0.087326 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020740 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020690 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020570 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020570 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020680 | RBH | 0.0 | 2.421718 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0362300 | RBH | 0.069 | 0.4711585 | 0.0379385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020280 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0371800 | RBH | 0.127401 | 1.452536 | 0.0764395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020560 | RBH | 0.0 | 0.0 | 0.0 |
