Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_01g0026240 OGI:01080690 | 15/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr01:27788752-27794146
Gene Symbol -
DNA seq

atgcccccgccgtggccgccggccgcgccgccgccggcctgcgcgcgctcgctcgctgacctcctcgtcgcgctctccgccgcccgcgcgctccccaaggggcagcagctccacgggcatctcctcaaggcaggccacctccccgccaccgcctcctcccacgcgcccatcgcccaccacctcctcaccttctacgcccgctgcgcgctccccggcgactccctctgcgccttcctcgacctccccgcgccgccatccccggccgcgtggtcctccctcatatcctccttctcacagaacggcctccccgccgccgcgttcgacgccttccgccgcatgctcgcggccggcgtccccgccaccgaccgcaacattccctccgccgccaaggcggtcgcagccgcggaagactcctcgcgcccgcctcttgccccgcacgcgctccatggactctccgccaagacaccgttcgccggcgacgtgtttgtcgggtcgtcggtgcttgacatgtatgccaagtgcgggcaccttgccgacgcccgccggctattcgatgaaatgccggagcggaatgtcgtctcctggtctgctctcatatgtgggtacgctgatgctgggatgcattccgcggcgatggagatcttccgcttagcacttgaggaggcagtgccggttaatgacttcacagtttcgtgcattcttcgcgtgtgtgctgcagcaacactctttgagcttggtgctcaggtgcacgcccgatctataaagacagctctaaatgcatcaccgtttgtgggtagctcgcttgtttctctttactcaaaatgtggccttgtggagtgtgcataccaggtgtttggtgaagcacctgagagaaaccttggaatttggaatgcggggctcaatgcatctgctcagcatggtcatactactgcagcatttcaacggtttatggatatgcaaaatgctggatttcgtcccaactccatcacgttcctgtctttgatcactgcttgtagccatgctggtcttgttgatgagggaaagagatatttttccctcatgaaagagtacagaattgagccgcaggctgagcattatgctgcaatggttgacctacttggccgtgtaggacgtataagtgaagcactaggccttattgagtcaatgcccatggagccacctgagtatgtctggggtgcactccttatggcatgtcgcatgtttaaggatgctgacgctgcagcaattgctgcaaagaggttgtttgagacagggtcacgaagctctggtgcacatatgctcttgtcaagcacgtatgcagctgcaggaaggcatatggatgcagcacttgcgaggaaagcaatgcgtgatgcaggtgtacgtaaagagactggactaagctggctggaagctgcaggggaggtacatacctttgtgtcaaattgcaggagacatccaagaagcaatgaaatttacaatgtgctggagaaagttggtgagaagatggaggcagctggttatgtagcagatacaagtgcagtggttaaggatgtggacaaggatgagaagcaagcaacaatgaggtatcatagtgaaaggctagcaataggtttggggcttctgattgttccagaaggtgtaccaatacgagttatgaagaacctacgagtttgtgatgattgccacaatgcagttaagtatctcagtaagtgtacaggaaggattgtaattctcagggataaccgtcggtttcaccggtttgaggatggggtatgctcttgtggggatttctggtgatatatcttctgatgtacctcattctcattcatcatgtttttctggtcaggcattttagattatatttcttcaggaaatagatctttacaggttcagtggctggtatgaaacacaaatctattgccatgctgttttggcacagaaaaaaacatgccataaccttcaagctgaaacagctggactcagccatggttctataaataaaacaggacatcggtcatgatatgttaggctcagtttaataatctgaataacagtgtcactgcacgatagttgagactgttctgatgcttcgttgtgcatagaagaatgattgatgtatcaggagaagctacatacaagtttccatacaccagtttgagagtcaccataatacatcagcatggtacagttcagtccgttacactataatcatataaacttttcttttataatgtctgtcattctatagtattatcaattataattgtattatttctttggtactaagtcataacttttcttttataatgtctgtcattctatagtattatcaattataattgtattatttctttggtactaagtcatctactttgagaaagataaacttctatatcttaaatagaacagcaaaactcagtttagatcaaaatgaaaaattattgtggccctgtttggatattagctaaacaatgcaatgtgaactgaaagtagcattagctttatttttcaggcactggtacatctgttgaaatttgttaggccaagacttaaaggtagctgctaaatgtattaaaatattgtactttggaagtgataggtagagatctgagctttatttgtggctttaccttgttgcacgtaggaccttgaccagctaggcagctagacccatattcagaaaggtgcaatggagtggctgctaagctcatattggttttccttgcctaattctggtgatgagtgttgcaaaatactcctttacaaatgtgcctttcctggatgatgttgccaataacagtgaaaaatggtggttacatacatcataactctgtagatggctcttcacaaacagaacttttggctgtatggtcatggtctatattattctattaaggatatagtcaagattacgattatacatatggttagtaatcattggaactaaaggttttaatatgaaatgctttggttagtaaacatggtactaatggatgcttctattggagaatacttcaaataccaaacagtacgcgtataaacttctgccatttattggagaaaaatcttctacagaagatgctgctcatttctggttgcaactggtgaaccccaccccctctcttcagaggcacacaaagatttggtgtgctgggtagtgtcaggtggcatttctttatgaatatgatggagttctccacttctcctttaggccttatttgatccgtgcaagtttcttcatgctttgaaatccaggatggatggttgccaagttgggcggttgattggtagggaagagaatgacagggagctcatcttctacatgcttatggaactgcagatttgatggagaggatagcaacctagaatcatacacacacacacacacacatatatacccagacgcccagtggaatatgaagttgcaagcttttgtggcttgtaagtaccaagcatcacagaccaaccatatacggcaaagatgagctccctaagagggcttggaaatatcgccagaagatggagagagctcaatggtgtgagttactggaaggggttacttgatcctcttgacgttgatctccgcaataacatcatcaactatggtgagctttctcaggcagcctacacggggttaaacagagagagaagatcaaggtacgctgggtcttgcctcttcagtcgcaaggacttcctcagcagggtggatgtatcaaacccaaatctgtatgtcattacaaagttcatatatgcaatgtgtactgtcagtttgcctgatgcattcatgataaagtcatggtcgaaggctgcatggagcaagcagtcaaattggatggggtttgttgcggtggccacagatgaaggtaaagaagtgcttgggagacgggatgtggtggtggcatggcgtggaacaatacggatggtagaatggatggatgaccttgatatttccttggtacctgcttcagaaatagtacggccaggcagtgctgatgacccttgtgtgcatggggggtggctgtctgtgtacacgagtgccgatccagaatctcagtacaataagcagagtgcaagatatcaggtaattcatgtcattcttgatttaaccattagtatatcaacgaaaaagccaatattgattgtcttatcttctgaagcaaacgttgtcaatttttgtccaagttataccttagtatatttaagtatctaaagtagagtatagtagatcgatagttacgcttgaaggataggagttgtttcatttgaagtgaaggaaagaaaaggatgtataccagatagcttatgctatggatcagggtattgcttatttgcttatacttcactgaaataacatagtacacgtgcaaatgttgtagaatcgctgtgcttgttatttatatgccctgctgttgcacatagttgtatggtaaatgttggtgcaacataaaactaatgaaaagcaataaaactgatttaagaagcaacacttgatataatctttcctgtttccctattatccattgtagagaaccaacgtaaggactccttttttcaccaatcggccatcatgtatctctgttccaccttactgcactaatgaagcatcatgatggtttcaagtgggagattattccgttatgattctcccaaagcttaatccacataaagacaatcatcgcacaacactagtgcattgcaagggaaggaagcttggattactgggtctatgatattaatgattactagatgttaaatagcattgtctgtgcatggaaaggaattttgatcgatcaaactaacatatttgtatcaggtcttgaatgagatcaaacggctccaggatatgtacgagcatgaggagactagcatcaccataacaggccacagccttggggctgcacttgccaccatcaatgccactgacattgtctccaatggttacaacaagagctgtccagtgtctgccttcgtcttcggtagcccaagagtgggcaaccctgattttcagaaagcgttcgacagtgctccagatttgagattgctccgcattcgaaactctcctgatgtggttccaaactggccaaaactaggatacagcgatgctggcacagagctgatgatcgatacagggaagtcaccatacctgaaggcccctgggaatcccctaacgtggcatgacatggagtgctacatgcatggggttgccgggacgcaggggagcaacggagggttcaagctggagattgatcgagacattgctttggttaacaaacacgaagacgcactgaagaatgagtatgcaattccatcgtcttggtgggtggtgcagaacaaaggtatggtgaaaggcacggatggtcggtggcatttggccgaccatgaggatgatgactga

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CDS seq

atgcccccgccgtggccgccggccgcgccgccgccggcctgcgcgcgctcgctcgctgacctcctcgtcgcgctctccgccgcccgcgcgctccccaaggggcagcagctccacgggcatctcctcaaggcaggccacctccccgccaccgcctcctcccacgcgcccatcgcccaccacctcctcaccttctacgcccgctgcgcgctccccggcgactccctctgcgccttcctcgacctccccgcgccgccatccccggccgcgtggtcctccctcatatcctccttctcacagaacggcctccccgccgccgcgttcgacgccttccgccgcatgctcgcggccggcgtccccgccaccgaccgcaacattccctccgccgccaaggcggtcgcagccgcggaagactcctcgcgcccgcctcttgccccgcacgcgctccatggactctccgccaagacaccgttcgccggcgacgtgtttgtcgggtcgtcggtgcttgacatgtatgccaagtgcgggcaccttgccgacgcccgccggctattcgatgaaatgccggagcggaatgtcgtctcctggtctgctctcatatgtgggtacgctgatgctgggatgcattccgcggcgatggagatcttccgcttagcacttgaggaggcagtgccggttaatgacttcacagtttcgtgcattcttcgcgtgtgtgctgcagcaacactctttgagcttggtgctcaggtgcacgcccgatctataaagacagctctaaatgcatcaccgtttgtgggtagctcgcttgtttctctttactcaaaatgtggccttgtggagtgtgcataccaggtgtttggtgaagcacctgagagaaaccttggaatttggaatgcggggctcaatgcatctgctcagcatggtcatactactgcagcatttcaacggtttatggatatgcaaaatgctggatttcgtcccaactccatcacgttcctgtctttgatcactgcttgtagccatgctggtcttgttgatgagggaaagagatatttttccctcatgaaagagtacagaattgagccgcaggctgagcattatgctgcaatggttgacctacttggccgtgtaggacgtataagtgaagcactaggccttattgagtcaatgcccatggagccacctgagtatgtctggggtgcactccttatggcatgtcgcatgtttaaggatgctgacgctgcagcaattgctgcaaagaggttgtttgagacagggtcacgaagctctggtgcacatatgctcttgtcaagcacgtatgcagctgcaggaaggcatatggatgcagcacttgcgaggaaagcaatgcgtgatgcaggtgtacgtaaagagactggactaagctggctggaagctgcaggggaggtacatacctttgtgtcaaattgcaggagacatccaagaagcaatgaaatttacaatgtgctggagaaagttggtgagaagatggaggcagctggttatgtagcagatacaagtgcagtggttaaggatgtggacaaggatgagaagcaagcaacaatgaggtatcatagtgaaaggctagcaataggtttggggcttctgattgttccagaaggtgtaccaatacgagttatgaagaacctacgagtttgtgatgattgccacaatgcagttaagtatctcagcattttagattatatttcttcaggaaatagatctttacaggttcagtggctgatgagctccctaagagggcttggaaatatcgccagaagatggagagagctcaatggtgtgagttactggaaggggttacttgatcctcttgacgttgatctccgcaataacatcatcaactatggtgagctttctcaggcagcctacacggggttaaacagagagagaagatcaagtttgcctgatgcattcatgataaagtcatggtcgaaggctgcatggagcaagcagtcaaattggatggggtttgttgcggtggccacagatgaagaaatagtacggccaggcagtgctgatgacccttgtgtgcatggggggtggctgtctgtgtacacgagtgccgatccagaatctcagtacaataagcagagtgcaagatatcaggtcttgaatgagatcaaacggctccaggatatgtacgagcatgaggagactagcatcaccataacaggccacagccttggggctgcacttgccaccatcaatgccactgacattgtctccaatggttacaacaagagctgtccagtgtctgccttcgtcttcggtagcccaagagtgggcaaccctgattttcagaaagcgttcgacagtgctccagatttgagattgctccgcattcgaaactctcctgatgtggttccaaactggccaaaactaggatacagcgatgctggcacagagctgatgatcgatacagggaagtcaccatacctgaaggcccctgggaatcccctaacgtggcatgacatggagtgctacatgcatggggttgccgggacgcaggggagcaacggagggttcaagctggagattgatcgagacattgctttggttaacaaacacgaagacgcactgaagaatgagtatgcaattccatcgtcttggtgggtggtgcagaacaaaggtatggtgaaaggcacggatggtcggtggcatttggccgaccatgaggatgatgactga

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Protein seq

MPPPWPPAAPPPACARSLADLLVALSAARALPKGQQLHGHLLKAGHLPATASSHAPIAHHLLTFYARCALPGDSLCAFLDLPAPPSPAAWSSLISSFSQNGLPAAAFDAFRRMLAAGVPATDRNIPSAAKAVAAAEDSSRPPLAPHALHGLSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPERNVVSWSALICGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMKEYRIEPQAEHYAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSILDYISSGNRSLQVQWLMSSLRGLGNIARRWRELNGVSYWKGLLDPLDVDLRNNIINYGELSQAAYTGLNRERRSSLPDAFMIKSWSKAAWSKQSNWMGFVAVATDEEIVRPGSADDPCVHGGWLSVYTSADPESQYNKQSARYQVLNEIKRLQDMYEHEETSITITGHSLGAALATINATDIVSNGYNKSCPVSAFVFGSPRVGNPDFQKAFDSAPDLRLLRIRNSPDVVPNWPKLGYSDAGTELMIDTGKSPYLKAPGNPLTWHDMECYMHGVAGTQGSNGGFKLEIDRDIALVNKHEDALKNEYAIPSSWWVVQNKGMVKGTDGRWHLADHEDDD

Function Phospholipase A1-II 1 [UniProtKB/Swiss-Prot:A2ZW16]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_01g0026240 OsLima_01g0026240.01 Chr01 27788752 27794146 + NAM
CDS seq

atgcccccgccgtggccgccggccgcgccgccgccggcctgcgcgcgctcgctcgctgacctcctcgtcgcgctctccgccgcccgcgcgctccccaaggggcagcagctccacgggcatctcctcaaggcaggccacctccccgccaccgcctcctcccacgcgcccatcgcccaccacctcctcaccttctacgcccgctgcgcgctccccggcgactccctctgcgccttcctcgacctccccgcgccgccatccccggccgcgtggtcctccctcatatcctccttctcacagaacggcctccccgccgccgcgttcgacgccttccgccgcatgctcgcggccggcgtccccgccaccgaccgcaacattccctccgccgccaaggcggtcgcagccgcggaagactcctcgcgcccgcctcttgccccgcacgcgctccatggactctccgccaagacaccgttcgccggcgacgtgtttgtcgggtcgtcggtgcttgacatgtatgccaagtgcgggcaccttgccgacgcccgccggctattcgatgaaatgccggagcggaatgtcgtctcctggtctgctctcatatgtgggtacgctgatgctgggatgcattccgcggcgatggagatcttccgcttagcacttgaggaggcagtgccggttaatgacttcacagtttcgtgcattcttcgcgtgtgtgctgcagcaacactctttgagcttggtgctcaggtgcacgcccgatctataaagacagctctaaatgcatcaccgtttgtgggtagctcgcttgtttctctttactcaaaatgtggccttgtggagtgtgcataccaggtgtttggtgaagcacctgagagaaaccttggaatttggaatgcggggctcaatgcatctgctcagcatggtcatactactgcagcatttcaacggtttatggatatgcaaaatgctggatttcgtcccaactccatcacgttcctgtctttgatcactgcttgtagccatgctggtcttgttgatgagggaaagagatatttttccctcatgaaagagtacagaattgagccgcaggctgagcattatgctgcaatggttgacctacttggccgtgtaggacgtataagtgaagcactaggccttattgagtcaatgcccatggagccacctgagtatgtctggggtgcactccttatggcatgtcgcatgtttaaggatgctgacgctgcagcaattgctgcaaagaggttgtttgagacagggtcacgaagctctggtgcacatatgctcttgtcaagcacgtatgcagctgcaggaaggcatatggatgcagcacttgcgaggaaagcaatgcgtgatgcaggtgtacgtaaagagactggactaagctggctggaagctgcaggggaggtacatacctttgtgtcaaattgcaggagacatccaagaagcaatgaaatttacaatgtgctggagaaagttggtgagaagatggaggcagctggttatgtagcagatacaagtgcagtggttaaggatgtggacaaggatgagaagcaagcaacaatgaggtatcatagtgaaaggctagcaataggtttggggcttctgattgttccagaaggtgtaccaatacgagttatgaagaacctacgagtttgtgatgattgccacaatgcagttaagtatctcagcattttagattatatttcttcaggaaatagatctttacaggttcagtggctgatgagctccctaagagggcttggaaatatcgccagaagatggagagagctcaatggtgtgagttactggaaggggttacttgatcctcttgacgttgatctccgcaataacatcatcaactatggtgagctttctcaggcagcctacacggggttaaacagagagagaagatcaagtttgcctgatgcattcatgataaagtcatggtcgaaggctgcatggagcaagcagtcaaattggatggggtttgttgcggtggccacagatgaagaaatagtacggccaggcagtgctgatgacccttgtgtgcatggggggtggctgtctgtgtacacgagtgccgatccagaatctcagtacaataagcagagtgcaagatatcaggtcttgaatgagatcaaacggctccaggatatgtacgagcatgaggagactagcatcaccataacaggccacagccttggggctgcacttgccaccatcaatgccactgacattgtctccaatggttacaacaagagctgtccagtgtctgccttcgtcttcggtagcccaagagtgggcaaccctgattttcagaaagcgttcgacagtgctccagatttgagattgctccgcattcgaaactctcctgatgtggttccaaactggccaaaactaggatacagcgatgctggcacagagctgatgatcgatacagggaagtcaccatacctgaaggcccctgggaatcccctaacgtggcatgacatggagtgctacatgcatggggttgccgggacgcaggggagcaacggagggttcaagctggagattgatcgagacattgctttggttaacaaacacgaagacgcactgaagaatgagtatgcaattccatcgtcttggtgggtggtgcagaacaaaggtatggtgaaaggcacggatggtcggtggcatttggccgaccatgaggatgatgactga

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Protein seq

MPPPWPPAAPPPACARSLADLLVALSAARALPKGQQLHGHLLKAGHLPATASSHAPIAHHLLTFYARCALPGDSLCAFLDLPAPPSPAAWSSLISSFSQNGLPAAAFDAFRRMLAAGVPATDRNIPSAAKAVAAAEDSSRPPLAPHALHGLSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPERNVVSWSALICGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMKEYRIEPQAEHYAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSILDYISSGNRSLQVQWLMSSLRGLGNIARRWRELNGVSYWKGLLDPLDVDLRNNIINYGELSQAAYTGLNRERRSSLPDAFMIKSWSKAAWSKQSNWMGFVAVATDEEIVRPGSADDPCVHGGWLSVYTSADPESQYNKQSARYQVLNEIKRLQDMYEHEETSITITGHSLGAALATINATDIVSNGYNKSCPVSAFVFGSPRVGNPDFQKAFDSAPDLRLLRIRNSPDVVPNWPKLGYSDAGTELMIDTGKSPYLKAPGNPLTWHDMECYMHGVAGTQGSNGGFKLEIDRDIALVNKHEDALKNEYAIPSSWWVVQNKGMVKGTDGRWHLADHEDDD

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0651100 RBH 0.614479 0.350961 0.167288
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g46230 RBH 0.183754 0.468554 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os01g0651100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0027380 RBH 0.000000 6.596134 0.476200
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0026860 RBH 0.040613 0.797937 0.350572
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0027320 RBH 0.474632 1.880189 3.148656
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0026560 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0026310 RBH 0.000000 3.399516 1.847886
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0440900 RBH 0.82189 1.9485115 1.6519695
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0025990 RBH 0.015815 0.000000 0.666478
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0429800 RBH 0.870153 1.652639 6.2527545
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0027430 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0026160 RBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0026490 RBH 0.741486 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0026540 RBH 0.076276 0.000000 0.247737
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0026370 RBH 0.0 1.292145 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G026750 RBH 0.033222 0.472943 0.104179
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0026520 RBH 0.339813 2.582010 2.754528
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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