Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0651100 | OGI:01080690 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:26293489-26298880 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCCTTCTCACAGAACGGCCTCCCCGCCGCCGCGTTCGACGCCTTCCGCCGCATGCTCGCGGCCGGCGTCCCCGCCACCGACCGCAACATTCCCTCCGCCGCCAAGGCGGTCGCAGCCGCGGAAGACTCCTCGCGCCCGCCTCTTGCCCCGCACGCGCTCCATGGACTCTCCGCCAAGACACCGTTCGCCGGCGACGTGTTTGTCGGGTCGTCGGTGCTTGACATGTATGCCAAGTGCGGGCACCTTGCCGACGCCCGCCGGCTATTCGATGAAATGCCGAAGCGGAATGTCGTCTCCTGGTCTGCTCTCATATGTGGGTACGCTGATGCTGGGATGCATTCCGCGGCGATGGAGATCTTCCGCTTAGCACTTGAGGAGGCAGTGCCGGTTAATGACTTCACAGTTTCGTGCATTCTTCGCGTGTGTGCTGCAGCAACACTCTTTGAGCTTGGTGCTCAGGTGCACGCCCGATCTATAAAGACAGCTCTAAATGCATCACCGTTTGTGGGTAGCTCGCTTGTTTCTCTTTACTCAAAATGTGGCCTTGTGGAGTGTGCATACCAGGTGTTTGGTGAAGCACCTGAGAGAAACCTTGGAATTTGGAATGCGGGGCTCAATGCATCTGCTCAGCATGGTCATACTACTGCAGCATTTCAACGGTTTATGGATATGCAAAATGCTGGATTTCGTCCCAACTCCATCACGTTCCTGTCTTTGATCACTGCTTGTAGCCATGCTGGTCTTGTTGATGAGGGAAAGAGATATTTTTCCCTCATGAAAGAGTACAGAATTGAGCCGCAGGCTGAGCATTATGCTGCAATGGTTGACCTACTTGGCCGTGTAGGACGTATAAGTGAAGCACTAGGCCTTATTGAGTCAATGCCCATGGAGCCACCTGAGTATGTCTGGGGTGCACTCCTTATGGCATGTCGCATGTTTAAGGATGCTGACGCTGCAGCAATTGCTGCAAAGAGGTTGTTTGAGACAGGGTCACGAAGCTCTGGTGCACATATGCTCTTGTCAAGCACGTATGCAGCTGCAGGAAGGCATATGGATGCAGCACTTGCGAGGAAAGCAATGCGTGATGCAGGTGTACGTAAAGAGACTGGACTAAGCTGGCTGGAAGCTGCAGGGGAGGTACATACCTTTGTGTCAAATTGCAGGAGACATCCAAGAAGCAACGAAATTTACAATGTGCTGGAGAAAGTTGGTGAGAAGATGGAGGCAGCTGGTTATGTAGCAGATACAAGTGCAGTGGTTAAGGATGTGGACAAGGATGAGAAGCAGGCAACAATGAGGTATCATAGTGAAAGGCTAGCAATAGGTTTGGGGCTTCTGATTGTTCCAGAAGGTGTACCAATACGAGTTATGAAGAACCTACGAGTTTGTGATGATTGCCACAATGCAGTTAAGTATCTCAGTAAGTGTACAGGAAGGATTGTAATTCTCAGGGATAACCGTCGGTTTCACCGGTTTGAGGATGGGGTATGCTCTTGTGGGGATTTCTGGTGATATATCTTCTGATGTACCTCATTCTCATTCATCATGTTTTTCTGGTCAGGCATTTTAGATTATATTTCTTCAGGAAATAGATCTTTACAGGTTCAGTGGCTGGTATGAAACACAAATCTATTGCCATGCTGTTTTGGCACAGAAAAAAACATGCCATAACCTTCAAGCTGAAACAGCTGGACTCAGCCATGGTTCTATAAATAAAACAGGACATCGGTCATGATATGTTAGGCTCAGTTTAATAATCTGAATAACAGTTTCACTGCACGATAGTTGAGACTGTTCTGATGCTTCGTTGTGCATAGAAGAATGATTGATGTATCAGGAGAAGCTACATACAAGTTTCCATACACCAGTTTGAGAGTCACCATAATACATCAGCATGGTACAGTTCAGTCCGTTACACTATAATCATATAAACTTTTCTTTTATAATGTCTGTCATTCTATAGTATTATCAATTATAATTGTATTATTTCTTTGGTACTAAGTCATAACTTTTCTTTTATAATGTCTGTCATTCTATAGTATTATCAATTATAATTGTATTATTTCTTTGGTACTAAGTCATCTACTTTGAGAAAGATAAACTTCTATATCTTAAATAGAACAGCAAAACTCAGTTTAGATCAAAATGAAAAATTATTGTGGCCCTGTTTGGATATTAGCTAAACAATGCAATGTGAACTGAAAGTAGCATTAGCTTTATTTTTCAGGCACTGGTACATCTGTTGAAATTTGTTAGGCCAAGACTTAAAGGTAGCTGCTAAATGTATTAAAATATTGTACTTTGGAAGTGATAGGTAGAGATCTGAGCTTTATTTGTGGCTTTACCTTGTTGCACGTAGGACCTTGACCAGCTAGGCAGCTAGACCCATATTCAGAAAGGTGCAATGGAGTGGCTGCTAAGCTCATATTGGTTTTCCTTGCCTAATTCTGGTGATGAGTGTTGCAAAATACTCCTTTACAAATGTGCCTTTCCTGGATGATGTTGCCAATAACAGTGAAAAATGGTGGTTACATACATCATAACTCTGTAGATGGCTCTTCACAAACAGAACTTTTGGCTGTATGGTCATGGTCTATATTATTCTATTAAGGATATAGTCAAGATTACGATTATACATATGGTTAGTAATCATTGGAACTAAAGGTTTTAATATGAAATGCTTTGGTTAGTAAACATGGTACTAATGGATGCTTCTATTGGAGAATACTTCAAATACCAAACAGTACGCGTATAAACTTCTGCCATTTATTGGAGAAAAATCTTCTACAGAAGATGCTGCTCATTTCTGGTTGCAACTGGTGAACCCCACCCCCTCTCTTCAGAGGCACACAAAGATTTGGTGTGCTGGGTAGTGTCAGGTGGCATTTCTTTATGAATATGATGGAGTTCTCCACTTCTCCTTTAGGCCTTATTTGATCCGTGCAAGTTTCTTCATGCTTTGAAATCCAGGATGGATGGTTGCCAAGTTGGGCGGTTGATTGGTAGGGAAGAGAATGACAGGGAGCTCATCTTCTACATGCTTATGGAACTGCAGATTTGATGGAGAGGATAGCAACCTAGAATCATACACACACACACACACACACACACACATATATACCCAGACGCCCAGTGGAATATGAAGTTGCAAGCTTTTGTGGCTTGTAAGTACCAAGCATCACAGACCAACCATATACGGCAAAGATGAGCTCCCTAAGAGGGCTTGGAAATATCGCCAGAAGATGGAGAGAGCTCAATGGTGTGAGTTACTGGAAGGGGTTACTTGATCCTCTTGACGTTGATCTCCGCAATAACATCATCAACTATGGTGAGCTTTCTCAGGCAGCCTACACGGGGTTAAACAGAGAGAGAAGATCAAGGTACGCTGGGTCTTGCCTCTTCAGTCGCAAGGACTTCCTCAGCAGGGTGGATGTATCAAACCCAAATCTGTATGTCATTACAAAGTTCATATATGCAATGTGTACTGTCAGTTTGCCTGATGCATTCATGATAAAGTCATGGTCGAAGGCTGCATGGAGCAAGCAGTCAAATTGGATGGGGTTTGTTGCGGTGGCCACAGATGAAGGTAAAGAAGTGCTTGGGAGACGGGATGTGGTGGTGGCATGGCGTGGAACAATACGGATGGTAGAATGGATGGATGACCTTGATATTTCCTTGGTACCTGCTTCAGAAATAGTACGGCCAGGCAGTGCTGATGACCCTTGTGTGCATGGGGGGTGGCTGTCTGTGTACACGAGTGCCGATCCAGAATCTCAGTACAATAAGCAGAGTGCAAGATATCAGGTAATTCATGTCATTCTTGATTTAACCATTAGTATATCAACGAAAAAGCCAATATTTATTGTCTTATCTTCTGAAGCAAACGTTGTCAATTTTTGTCCAAGTTATACCTTAGTATATTTAAGTATCTAAAGTAGAGTATAGTAGATCGATAGTTACGCTTGAAGGATAGGAGTTGTTTCATTTGAAGTGAAGGAAAGAAAAGGATGTATACCAGATAGCTTATGCTATGGATCAGGGTATTGCTTATTTGCTTATACTTCACTGAAATAACATAGTACACGTGCAAATGTTGTAGAATCGCTGTGCTTGTTATTTATATGCCCTGCTGTTGCACATAGTTGTATGGTAAATGTTGGTGCAACATAAAACTAATGAAAAGCAATAAAACTGATTTAAGAAGCAACACTTGATATAATCTTTCCTGTTTCCCTATTATCCATTGTAGAGAACCAACGTAAGGACTCCTTTTTTCACCAATCGGCCATCATGTATCTCTGTTCCACCTTACTGCACTAATGAAGCATCATGATGGTTTCAAGTGGGAGATTATTCCGTTATGATTCTCCCAAAGCTTAATCCACATAAAGACAATCATCGCACAACACTAGTGCATTGCAAGGGAAGGAAGCTTGGATTACTGGGTCTATGATATTAATGATTACTAGATGTTAAATAGCATTGTCTGTGCATGGAAAGGAATTTTGATCGATCAAACTAACATATTTGTATCAGGTCTTGAATGAGATCAAACGGCTCCAGGATATGTACGAGCATGAGGAGACTAGCATCACCATAACAGGCCACAGCCTTGGGGCTGCACTTGCCACCATCAATGCCACTGACATTGTCTCCAATGGTTACAACAAGAGCTGTCCAGTGTCTGCCTTCGTCTTCGGTAGCCCAAGAGTGGGCAACCCTGATTTTCAGAAAGCGTTCGACAGTGCTCCAGATTTGAGATTGCTCCGCATTCGAAACTCTCCTGATGTGGTTCCAAACTGGCCAAAACTAGGATACAGCGATGCTGGCACAGAGCTGATGATCGATACAGGGAAGTCACCATACCTGAAGGCCCCTGGGAATCCCCTAACGTGGCATGACATGGAGTGCTACATGCATGGGGTTGCCGGGACGCAGGGGAGCAACGGAGGGTTCAAGCTGGAGATTGATCGAGACATTGCTTTGGTTAACAAACACGAAGACGCACTGAAGAATGAGTATGCAATTCCATCGTCTTGGTGGGTGGTGCAGAACAAAGGTATGGTGAAAGGCACGGATGGTCGGTGGCATTTGGCCGACCATGAGGATGATGACTGATGCACCCAGGCATCTCCTCTTGATGCCTGATTCAACCGACAGCTCAAAACTAAGACTCTGAAAACAGGGGATACTTTCATGTGTTCGTTATTGCTCGACAATGAAGTAATGCATATGTTTGGAATCATTTTGTTTTTAACATTTTTCAGTTCATTGTGTTTTACTTAATGTTATCTGTAATAAGTTATCAAAATTGCCCGCTGAAAAATGAATTATCAGAATTGTTAAGTTGTGACGTTTCTGACAAGCAAAGCAAGTGAAGGCAGTCTTGGT
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| CDS seq | ATGCTCGCGGCCGGCGTCCCCGCCACCGACCGCAACATTCCCTCCGCCGCCAAGGCGGTCGCAGCCGCGGAAGACTCCTCGCGCCCGCCTCTTGCCCCGCACGCGCTCCATGGACTCTCCGCCAAGACACCGTTCGCCGGCGACGTGTTTGTCGGGTCGTCGGTGCTTGACATGTATGCCAAGTGCGGGCACCTTGCCGACGCCCGCCGGCTATTCGATGAAATGCCGAAGCGGAATGTCGTCTCCTGGTCTGCTCTCATATGTGGGTACGCTGATGCTGGGATGCATTCCGCGGCGATGGAGATCTTCCGCTTAGCACTTGAGGAGGCAGTGCCGGTTAATGACTTCACAGTTTCGTGCATTCTTCGCGTGTGTGCTGCAGCAACACTCTTTGAGCTTGGTGCTCAGGTGCACGCCCGATCTATAAAGACAGCTCTAAATGCATCACCGTTTGTGGGTAGCTCGCTTGTTTCTCTTTACTCAAAATGTGGCCTTGTGGAGTGTGCATACCAGGTGTTTGGTGAAGCACCTGAGAGAAACCTTGGAATTTGGAATGCGGGGCTCAATGCATCTGCTCAGCATGGTCATACTACTGCAGCATTTCAACGGTTTATGGATATGCAAAATGCTGGATTTCGTCCCAACTCCATCACGTTCCTGTCTTTGATCACTGCTTGTAGCCATGCTGGTCTTGTTGATGAGGGAAAGAGATATTTTTCCCTCATGAAAGAGTACAGAATTGAGCCGCAGGCTGAGCATTATGCTGCAATGGTTGACCTACTTGGCCGTGTAGGACGTATAAGTGAAGCACTAGGCCTTATTGAGTCAATGCCCATGGAGCCACCTGAGTATGTCTGGGGTGCACTCCTTATGGCATGTCGCATGTTTAAGGATGCTGACGCTGCAGCAATTGCTGCAAAGAGGTTGTTTGAGACAGGGTCACGAAGCTCTGGTGCACATATGCTCTTGTCAAGCACGTATGCAGCTGCAGGAAGGCATATGGATGCAGCACTTGCGAGGAAAGCAATGCGTGATGCAGGTGTACGTAAAGAGACTGGACTAAGCTGGCTGGAAGCTGCAGGGGAGGTACATACCTTTGTGTCAAATTGCAGGAGACATCCAAGAAGCAACGAAATTTACAATGTGCTGGAGAAAGTTGGTGAGAAGATGGAGGCAGCTGGTTATGTAGCAGATACAAGTGCAGTGGTTAAGGATGTGGACAAGGATGAGAAGCAGGCAACAATGAGGTATCATAGTGAAAGGCTAGCAATAGGTTTGGGGCTTCTGATTGTTCCAGAAGGTGTACCAATACGAGTTATGAAGAACCTACGAGTTTGTGATGATTGCCACAATGCAGTTAAGTATCTCAGTAAGTGTACAGGAAGGATTGTAATTCTCAGGGATAACCGTCGGTTTCACCGGTTTGAGGATGGGGTATGCTCTTGTGGGGATTTCTGGTGA
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| Protein seq | MLAAGVPATDRNIPSAAKAVAAAEDSSRPPLAPHALHGLSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMKEYRIEPQAEHYAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRIVILRDNRRFHRFEDGVCSCGDFW |
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| Function | Putative pentatricopeptide repeat-containing protein At5g52630 [UniProtKB/Swiss-Prot:Q9LTF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0651100 | Os01t0651100-01 | Chr01 | 26293489 | 26298880 | + | irgsp1_rep | ||
| CDS seq | ATGCTCGCGGCCGGCGTCCCCGCCACCGACCGCAACATTCCCTCCGCCGCCAAGGCGGTCGCAGCCGCGGAAGACTCCTCGCGCCCGCCTCTTGCCCCGCACGCGCTCCATGGACTCTCCGCCAAGACACCGTTCGCCGGCGACGTGTTTGTCGGGTCGTCGGTGCTTGACATGTATGCCAAGTGCGGGCACCTTGCCGACGCCCGCCGGCTATTCGATGAAATGCCGAAGCGGAATGTCGTCTCCTGGTCTGCTCTCATATGTGGGTACGCTGATGCTGGGATGCATTCCGCGGCGATGGAGATCTTCCGCTTAGCACTTGAGGAGGCAGTGCCGGTTAATGACTTCACAGTTTCGTGCATTCTTCGCGTGTGTGCTGCAGCAACACTCTTTGAGCTTGGTGCTCAGGTGCACGCCCGATCTATAAAGACAGCTCTAAATGCATCACCGTTTGTGGGTAGCTCGCTTGTTTCTCTTTACTCAAAATGTGGCCTTGTGGAGTGTGCATACCAGGTGTTTGGTGAAGCACCTGAGAGAAACCTTGGAATTTGGAATGCGGGGCTCAATGCATCTGCTCAGCATGGTCATACTACTGCAGCATTTCAACGGTTTATGGATATGCAAAATGCTGGATTTCGTCCCAACTCCATCACGTTCCTGTCTTTGATCACTGCTTGTAGCCATGCTGGTCTTGTTGATGAGGGAAAGAGATATTTTTCCCTCATGAAAGAGTACAGAATTGAGCCGCAGGCTGAGCATTATGCTGCAATGGTTGACCTACTTGGCCGTGTAGGACGTATAAGTGAAGCACTAGGCCTTATTGAGTCAATGCCCATGGAGCCACCTGAGTATGTCTGGGGTGCACTCCTTATGGCATGTCGCATGTTTAAGGATGCTGACGCTGCAGCAATTGCTGCAAAGAGGTTGTTTGAGACAGGGTCACGAAGCTCTGGTGCACATATGCTCTTGTCAAGCACGTATGCAGCTGCAGGAAGGCATATGGATGCAGCACTTGCGAGGAAAGCAATGCGTGATGCAGGTGTACGTAAAGAGACTGGACTAAGCTGGCTGGAAGCTGCAGGGGAGGTACATACCTTTGTGTCAAATTGCAGGAGACATCCAAGAAGCAACGAAATTTACAATGTGCTGGAGAAAGTTGGTGAGAAGATGGAGGCAGCTGGTTATGTAGCAGATACAAGTGCAGTGGTTAAGGATGTGGACAAGGATGAGAAGCAGGCAACAATGAGGTATCATAGTGAAAGGCTAGCAATAGGTTTGGGGCTTCTGATTGTTCCAGAAGGTGTACCAATACGAGTTATGAAGAACCTACGAGTTTGTGATGATTGCCACAATGCAGTTAAGTATCTCAGTAAGTGTACAGGAAGGATTGTAATTCTCAGGGATAACCGTCGGTTTCACCGGTTTGAGGATGGGGTATGCTCTTGTGGGGATTTCTGGTGA
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| Protein seq | MLAAGVPATDRNIPSAAKAVAAAEDSSRPPLAPHALHGLSAKTPFAGDVFVGSSVLDMYAKCGHLADARRLFDEMPKRNVVSWSALICGYADAGMHSAAMEIFRLALEEAVPVNDFTVSCILRVCAAATLFELGAQVHARSIKTALNASPFVGSSLVSLYSKCGLVECAYQVFGEAPERNLGIWNAGLNASAQHGHTTAAFQRFMDMQNAGFRPNSITFLSLITACSHAGLVDEGKRYFSLMKEYRIEPQAEHYAAMVDLLGRVGRISEALGLIESMPMEPPEYVWGALLMACRMFKDADAAAIAAKRLFETGSRSSGAHMLLSSTYAAAGRHMDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVGEKMEAAGYVADTSAVVKDVDKDEKQATMRYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCHNAVKYLSKCTGRIVILRDNRRFHRFEDGVCSCGDFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0651100 | RBH | 0.614479 | 0.350961 | 0.167288 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g46230 | RBH | 0.183754 | 0.468554 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0572900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027380 | RBH | 0.000000 | 6.596134 | 0.476200 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026860 | RBH | 0.040613 | 0.797937 | 0.350572 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027320 | RBH | 0.474632 | 1.880189 | 3.148656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026560 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026310 | RBH | 0.000000 | 3.399516 | 1.847886 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0440900 | RBH | 0.82189 | 1.9485115 | 1.6519695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025990 | RBH | 0.015815 | 0.000000 | 0.666478 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0429800 | RBH | 0.870153 | 1.652639 | 6.2527545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026160 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026490 | RBH | 0.741486 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026540 | RBH | 0.076276 | 0.000000 | 0.247737 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026370 | RBH | 0.0 | 1.292145 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026750 | RBH | 0.033222 | 0.472943 | 0.104179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0026520 | RBH | 0.339813 | 2.582010 | 2.754528 |
