Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_01g0021870 OGI:01070210 | 14/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr01:23698611-23706074
Gene Symbol OsLCYe, OsLCYepsilon, RLCK39, OsRLCK39
DNA seq

acacgcagagaccagtagctttcgcagcggcggcagcggcagccaccacctcctcctcctcctccccctcctccccggcgacgcactcctcctcctcctcatccgacggtgcggaaccaagcgatggagttctccggcggcgcgaccgtgtcggcgccgttcggttgctgccgtgcggcgtggggcgcggcggcggcggagggaaggagcaggaggtttgtgccgcgcgcggtggagccgcggcggcgcgggcgatggatggtgaggtgcgtggcgacggagaagcacaaggacgcggcggcggcgcggctcggcggcgtggaggtggagttcgccgacgaggaggactacgtcaagggcggcggcggcgagctgatctacgtgcaaatgcaggcgtccaagtccatggacagccagtccaagatctcctccaaggtaggaggagtagtagtaataaatcataccactactccatttttttttacttgtttatgcatgcctagatgatcttgattttagcagttaattaacattatgcaaggtcgagatctagctttatacaaaacccacaatccaccttgctgccatggttgccgtttacaagaaagaatcaaacacgaaattcatcaacagaatgaatgaaacactgttgcatcgccctgatggttgcagtgatcttaatagcaccttaaggttctgagttcaaatcttcgtaggagcgaatttcagtttgggttatttgagggctaagttctctgtttgataggctaagctcctaaattaaaatggctggatatagaaatacctttctggatatagaaatacctttctcttaaaaaaatgaatgaaacactgttacatcgccctgatcacgcgcgtgctacgacgacgggtgtggaatgttggtgcacgtgatgctatcacgcattcactccatatcttaaaaaaacaaaaaagaaaaaaaataaaatataagagcagcctctggttgcccatgcttgctgctgctgccttgccatatctctgtggagcttggactattctccatgtctcctgtaatgggagctcacgtcgtcgcctgtacaaaaggtgttaattaggggataagttaagagtatctcgtactgtgctcaactcaactgctgactaattacaccttcggatgcaacttggaacgtactgttgcgttaattattatttgcttgcaaatttcttcgttatgttgaatttgatgaaagtgtacgtacgtcgcatttgctgtccaacatcacacctttgacttgatgtgattcaagcaaagcaacaaatggagtgataggctaaacacaagcacagttccccgaaatcatgccatttattcttgacacttggacatcctggaaattgttcaaagtttctagactgctaggaatgcgaataacttgtactgaacttttgaaacatctttgtcagcccaatcaggattttttttttatagtttatttcctgaaactctgcattggaacgaatagttaaagggtgtcccaagaaaataaagcacgtgctctgaatctttgtgtgcagctgctgcccatacccgatgaaaattcagttcttgatttggtcatcattggctgcggtccagctggcttatccctagcagcagagtcagctaagaaagggctcaatgttggtctcattggccctgatcttccattcacgaacaattacggtgtgtgggaggatgaattcaaaggtagcacactattttcagcattgaataaaattgttgccatcataatttggtacatgatggacttatggctcttaatcttttgccatccagacctgggcctggagagctgcattgaacatgtctggaaggatactatcgtgtacctagacggtaacaagccaataatgattggccgtgcgtatggcagggttcacagggacttgctgcacgaggagttgctgagaaggtaaattttcagttagcaatcttgagagtaaacagagtcaggcaaagtgatacaaaatggttgatgaaaaaaatatactctaaatactggcagatgctatgacgctggagtcacatacctcagctcgaaggtggacaagatcatggaatctcctgatggacatcgggtagtctgttgtgaaggtgatcgtgaggtactttgcaggcttgcgattgttgcatctggggcagcatctggtaggcttctagagtacgaggttggtggtccgcgtgtttgtgtgcagactgcatatggtgtcgaagtcgaggtatgcacaactcctatagaacttactcccctcgagagtttagaatagtttcctttctgtcgtcgtgtttctacgagcattttattcatattgtttcaagctgaaaattttagatatgttatttgggcacatgtcattcatctttcacaatgatttgaaaattttcaggtggaaaacaatccatatgatcccagcttaatggttttcatggactacagagattgcttcaaagacaaattctcacatcctgagcaaggaaatccaacgttcctctatgccatgcccatgtcatccacacgaattttctttgaggtccatatgagaaactttatcacaatttattcctccgactagtattttcccatgcttttgtgttgctgatgataattatttcaagacaggaaacatgcctagcttcaaaagaagcaatgccctttgacctccttaagaagcggttgatgtctcggttggatgcaatgggagttcatattcgaaaagtatacgaggaggtaacaagttatggcttggtgtcactagttgtttctcttgcctaggtgaagtgaaatttaacctaaatgctgaactcttggtttcaggaatggtcctacattcctgttggagggtccttaccaaatacagaccagaaaaatctcgcatttggtgcggcagcaagtatggtgcatcctgcaaccggtactaacaaatcctcaatccgtactttcaatttttcttgtatttacaggcaataatataatatttatctgtcaaaaacataggatactcagtggttagatcattgtctgaagctccaagatatgcatctgtgatatctgacatcttgagaaaccgtgtctaccctggacaatatttgcctggaacctctcaaagttccagtccatcaatgcttggtaagtattcttctgatctttattcaattttattgacaagcacaccagtattacaaattggagtacattgcttcagatgagggcagtattttagtataattttggaaatgtcaggaacattttctggtactaattgctatgcggtgttgcagcatggagaacattatggccccaagaacggaaacgtcaacgatcattcttcctttttgggctggctttgataatccaactgaataacgaaggcattcagacattctttgaaacctttttccggttgcccaaatggtaattctactcttgattgcatttgcctctgttttcagtctatttacaaacaccattatgtatgacctgaagattgccacccaacaaagtgttcatcactgttctttgttactatcaggatgtggcgaggattccttggttcgacgctttcttcagtggatctcatactctttgcattctacatgttcacaattgcgccgaaccaaatgcgaatgaaccttgtcagacatctcctctctgatccgaccggctcaacgatgatcaagacctacctgaccttgtaaaaccatttcagcagtctgaaagaatactaggaaatgtacagttttgtagtttgtacataacatagtgagagccagaggatatgggggttggggggttacttatcatgctagaacaacaaaacactgcaagaattttatgcatgaatttggcaaatggaatagattgtgcagaatgggaacacgtgaatacgtgatgcgtgtgctggaacaacaagtaggaggaataaaacccatggattatggatcttgtagtgagctgcattatagccatttttaggtcttatcatctctctcccctttccatttttacctctatccggttttcgacatgccggattacacaccctatttcagatagctcggccaaaatgttccacaaacattttagaaaaggagcaaaatgggaaaagaggagaaaaaaaaaagagatggtgcaagaatagtctgaggctatccttgctccattgccatggcatttaggtccaagaagcaggggggagggaggaggaggccattgcagagagtttgagaggaaggttggaggcaaggaagagagacagaggagaaggaagagcaggaggagagggaaaaggaaaaccctttctctcagcctctctgcctctctctcttcttctccttccttgcaccaccatcctactcaccgtcgcctcatccactgatccggccggcgatatcactaccatccatccatcacattacggtcggcgtcggcggcggcgacgacgacgaaggcgggtgagatctcaccggagaagcgcaggagggcaggatgcaaggaggagggccgctcagccccgacgagcaccgggccacctcgccgccggggatgatgcaccaccagccggcgatgacgatcgtcgtcgccgtggaccgtgaccggaacagccagcttgccgtgaagtgggtcgtcgaccacctcctcaccggcgcctccaacatcatcctcctccacatcgccgtccacccccctgccgccagccgtacgccgatcgccggatcagccattgccatgcgtctctctgctgcaactgcaagagatcgtaaaactgatgtgcatttttcttcTttttttttttttgtggtgacgcagatggattcgccatggccgaggcgacgcatggcgcgttggaggccgagatgagggagatctttgtccccttcagaggattctgcaccaggaatggggtaaccaaatatttagcttcagatcaacacaagaaattaatcctttcagatcaaagacatgaaccaaaaaaaaaaaaacttaattacgagagcacattttgttttccgttgttgatcgatcaggtgcacgtgtcggagttggtactggaagaggcagacgtgtcaaaggccttaatagagttcatcaccgtgaacaagatccagagcatcgcgctcggtgcatccaacagaaatgcattcaccaagtaaatcgatcaagatcaatcatttgtttcgttttgattttgatccgatttcgatccaattttaaggtgttgttcttggtggtgatggtggtggtgctgcattgcttgttggtcaggaaattcaagaacgccgacgtgccgtccagcctgatgaagggcgcgccggactactgcaacatctacgtggtggcgaagggcaagtcggtgaacgtgaggctcgccaagtgcggcgtcgatggcggttgcggcggtggcggtggctacgagggcgactcatcgatcaggagcctgtacacgaggaggtgctcgagggggaagctgccgccggcgactccgtcgccggactcgtcgaggcggtcggtggacagccgcaccctgccggagctcaccacgcggccgccgttccgcgagcgctcgctcacgacctcgtcgtccaagcccgtcgtcctgtccagcagggcggcgcccgacggcgtcgacgggtcgtaccgctcgacgaggcggtccgtgtcgaacgagtccttcgtcggcgacctcgacttcggccagagctcgcgcttctcctccatggacttctgcgacagcctcgacatgtcgtcgctctccgccagcccacgggagagcagctcgcctctctccgccgtgcgttcttggaccacttcgactcctcgacgccattgctgcgacgccattgctgacgtgggtgtgtgtgcagccgcagcgcgaggtggaggtggagatgcggcggctgaggctggagctgaagcagacgatggacatgtacaacgcggcgtgccgggaggcgatcaacgcgaagcagcggaccaaggagctgcagctgctgaagctggaggaggcgcggcggctggaggaggcgcggcacgcggaggaggcggcgctggcgatggcggagatggagaagaccaagtgccgcgcggccatggaggcggccgaggcggcgcagcggctggccgacctggaggcgcagcggcggcgcaacgccgaggtgcgcgcccgccgcgaggccgacgagaaggtccgcgccctggacgccatctccaaccacgacttccgctaccgccgctacaacatcgacgacatcgagctcgccaccgagcgcttctccgacgagctcaagatcggcgagggcggctacggccccgtctaccgcgcctccctcgaccacaccccggtggccatcaaggtgctccgccccgacgcgcagcagggccggaagcagttccagcaggaggtggaggtgctcagctgcatccgccacccaaacatggtgctcctcctcggcgcctgcccggactacggctgcctcgtctacgagtacatggacaacggcagcctcgaggaccgcctgttccgccgcggcggcacgccgccgatcccgtggagccagcggttcaggatctcggcggagatcgccaccgcgctgctgttcctccaccagaccaagccggagccgctggtgcaccgcgacctgaagccggccaacatcctgctcgaccgcaactacgtcagcaagatcagcgacgtcgggctggcgcgcctggtgccgccggcggtggcggacagcgtgacgcagtaccggctgacggcgacggcggggaccttctgctacatcgacccggagtaccagcagacggggaagctgggcgtcaagtccgacatctactccctcggcgtgctgctgctgcaggtgctcaccgcgcggccgcccatgggcctcacccaccacgtcgagaaggccatcgacgccggcaccttcgcccagatgctcgacgtcaccgtcaaggactggcccgtcgacgacgccatcggcttcgccaagctcgccctcaagtgcaccgaaatgcgccggagggaccgcccggacctcgccaccgtcatcctgccggagctcaaccgcctcaggaacctcggacacgcctacgaggcgcgcatgagcgccgccgccgccgacgccgccgcgcacgcccaggacaacgtcggctcgccgacggtggtgggcgcgtcgtggagaacggcggagagctaagctagcgggaggccgtgtcagttattttagagtcacaggagagggtggagttcacacggtacatttacggtctttttttgtcggtgtaaatccttaaataccttggtgtttgtacagttgacaaaaaaaattaacatgttctgcggtggttggctcaaaattttgaggtgtccgaatgattcttttttcctggttatacagcagaaagattaaaaaaaatt

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CDS seq

atggagttctccggcggcgcgaccgtgtcggcgccgttcggttgctgccgtgcggcgtggggcgcggcggcggcggagggaaggagcaggaggtttgtgccgcgcgcggtggagccgcggcggcgcgggcgatggatggtgaggtgcgtggcgacggagaagcacaaggacgcggcggcggcgcggctcggcggcgtggaggtggagttcgccgacgaggaggactacgtcaagggcggcggcggcgagctgatctacgtgcaaatgcaggcgtccaagtccatggacagccagtccaagatctcctccaagctgctgcccatacccgatgaaaattcagttcttgatttggtcatcattggctgcggtccagctggcttatccctagcagcagagtcagctaagaaagggctcaatgttggtctcattggccctgatcttccattcacgaacaattacggtgtgtgggaggatgaattcaaagacctgggcctggagagctgcattgaacatgtctggaaggatactatcgtgtacctagacggtaacaagccaataatgattggccgtgcgtatggcagggttcacagggacttgctgcacgaggagttgctgagaagatgctatgacgctggagtcacatacctcagctcgaaggtggacaagatcatggaatctcctgatggacatcgggtagtctgttgtgaaggtgatcgtgaggtactttgcaggcttgcgattgttgcatctggggcagcatctggtaggcttctagagtacgaggtggaaaacaatccatatgatcccagcttaatggttttcatggactacagagattgcttcaaagacaaattctcacatcctgagcaaggaaatccaacgttcctctatgccatgcccatgtcatccacacgaattttctttgaggaaacatgcctagcttcaaaagaagcaatgccctttgacctccttaagaagcggttgatgtctcggttggatgcaatgggagttcatattcgaaaagtatacgaggaggaatggtcctacattcctgttggagggtccttaccaaatacagaccagaaaaatctcgcatttggtgcggcagcaagtatggtgcatcctgcaaccggatactcagtggttagatcattgtctgaagctccaagatatgcatctgtgatatctgacatcttgagaaaccgtgtctaccctggacaatatttgcctggaacctctcaaagttccagtccatcaatgcttgcatggagaacattatggccccaagaacggaaacgtcaacgatcattcttcctttttgggctggctttgataatccaactgaataacgaaggcattcagacattctttgaaacctttttccggttgcccaaatggatgtggcgaggattccttggttcgacgctttcttcagtggatctcatactctttgcattctacatgttcacaattgcgccgaaccaaatgcgaatgaaccttgtcagacatctcctctctgatccgaccggctcaacgatgatcaagacctacctgaccttattgtgcagaatgggaacacgtgaatacgtgatgcgtgtgctggaacaacaagtaggaggaataaaacccatggattatggatcttgtaatggattcgccatggccgaggcgacgcatggcgcgttggaggccgagatgagggagatctttgtccccttcagaggattctgcaccaggaatggggtgcacgtgtcggagttggtactggaagaggcagacgtgtcaaaggccttaatagagttcatcaccgtgaacaagatccagagcatcgcgctcggtgcatccaacagaaatgcattcaccaagaaattcaagaacgccgacgtgccgtccagcctgatgaagggcgcgccggactactgcaacatctacgtggtggcgaagggcaagtcggtgaacgtgaggctcgccaagtgcggcgtcgatggcggttgcggcggtggcggtggctacgagggcgactcatcgatcaggagcctgtacacgaggaggtgctcgagggggaagctgccgccggcgactccgtcgccggactcgtcgaggcggtcggtggacagccgcaccctgccggagctcaccacgcggccgccgttccgcgagcgctcgctcacgacctcgtcgtccaagcccgtcgtcctgtccagcagggcggcgcccgacggcgtcgacgggtcgtaccgctcgacgaggcggtccgtgtcgaacgagtccttcgtcggcgacctcgacttcggccagagctcgcgcttctcctccatggacttctgcgacagcctcgacatgtcgtcgctctccgccagcccacgggagagcagctcgcctctctccgccccgcagcgcgaggtggaggtggagatgcggcggctgaggctggagctgaagcagacgatggacatgtacaacgcggcgtgccgggaggcgatcaacgcgaagcagcggaccaaggagctgcagctgctgaagctggaggaggcgcggcggctggaggaggcgcggcacgcggaggaggcggcgctggcgatggcggagatggagaagaccaagtgccgcgcggccatggaggcggccgaggcggcgcagcggctggccgacctggaggcgcagcggcggcgcaacgccgaggtgcgcgcccgccgcgaggccgacgagaaggtccgcgccctggacgccatctccaaccacgacttccgctaccgccgctacaacatcgacgacatcgagctcgccaccgagcgcttctccgacgagctcaagatcggcgagggcggctacggccccgtctaccgcgcctccctcgaccacaccccggtggccatcaaggtgctccgccccgacgcgcagcagggccggaagcagttccagcaggaggtggaggtgctcagctgcatccgccacccaaacatggtgctcctcctcggcgcctgcccggactacggctgcctcgtctacgagtacatggacaacggcagcctcgaggaccgcctgttccgccgcggcggcacgccgccgatcccgtggagccagcggttcaggatctcggcggagatcgccaccgcgctgctgttcctccaccagaccaagccggagccgctggtgcaccgcgacctgaagccggccaacatcctgctcgaccgcaactacgtcagcaagatcagcgacgtcgggctggcgcgcctggtgccgccggcggtggcggacagcgtgacgcagtaccggctgacggcgacggcggggaccttctgctacatcgacccggagtaccagcagacggggaagctgggcgtcaagtccgacatctactccctcggcgtgctgctgctgcaggtgctcaccgcgcggccgcccatgggcctcacccaccacgtcgagaaggccatcgacgccggcaccttcgcccagatgctcgacgtcaccgtcaaggactggcccgtcgacgacgccatcggcttcgccaagctcgccctcaagtgcaccgaaatgcgccggagggaccgcccggacctcgccaccgtcatcctgccggagctcaaccgcctcaggaacctcggacacgcctacgaggcgcgcatgagcgccgccgccgccgacgccgccgcgcacgcccaggacaacgtcggctcgccgacggtggtgggcgcgtcgtggagaacggcggagagctaa

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Protein seq

MEFSGGATVSAPFGCCRAAWGAAAAEGRSRRFVPRAVEPRRRGRWMVRCVATEKHKDAAAARLGGVEVEFADEEDYVKGGGGELIYVQMQASKSMDSQSKISSKLLPIPDENSVLDLVIIGCGPAGLSLAAESAKKGLNVGLIGPDLPFTNNYGVWEDEFKDLGLESCIEHVWKDTIVYLDGNKPIMIGRAYGRVHRDLLHEELLRRCYDAGVTYLSSKVDKIMESPDGHRVVCCEGDREVLCRLAIVASGAASGRLLEYEVENNPYDPSLMVFMDYRDCFKDKFSHPEQGNPTFLYAMPMSSTRIFFEETCLASKEAMPFDLLKKRLMSRLDAMGVHIRKVYEEEWSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYSVVRSLSEAPRYASVISDILRNRVYPGQYLPGTSQSSSPSMLAWRTLWPQERKRQRSFFLFGLALIIQLNNEGIQTFFETFFRLPKWMWRGFLGSTLSSVDLILFAFYMFTIAPNQMRMNLVRHLLSDPTGSTMIKTYLTLLCRMGTREYVMRVLEQQVGGIKPMDYGSCNGFAMAEATHGALEAEMREIFVPFRGFCTRNGVHVSELVLEEADVSKALIEFITVNKIQSIALGASNRNAFTKKFKNADVPSSLMKGAPDYCNIYVVAKGKSVNVRLAKCGVDGGCGGGGGYEGDSSIRSLYTRRCSRGKLPPATPSPDSSRRSVDSRTLPELTTRPPFRERSLTTSSSKPVVLSSRAAPDGVDGSYRSTRRSVSNESFVGDLDFGQSSRFSSMDFCDSLDMSSLSASPRESSSPLSAPQREVEVEMRRLRLELKQTMDMYNAACREAINAKQRTKELQLLKLEEARRLEEARHAEEAALAMAEMEKTKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISNHDFRYRRYNIDDIELATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAQQGRKQFQQEVEVLSCIRHPNMVLLLGACPDYGCLVYEYMDNGSLEDRLFRRGGTPPIPWSQRFRISAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPAVADSVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVLTARPPMGLTHHVEKAIDAGTFAQMLDVTVKDWPVDDAIGFAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAAAADAAAHAQDNVGSPTVVGASWRTAES

Function Lycopene epsilon cyclase, chloroplastic [UniProtKB/Swiss-Prot:Q38932]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_01g0021870 OsLima_01g0021870.01 Chr01 23698611 23706074 + NAM
CDS seq

atggagttctccggcggcgcgaccgtgtcggcgccgttcggttgctgccgtgcggcgtggggcgcggcggcggcggagggaaggagcaggaggtttgtgccgcgcgcggtggagccgcggcggcgcgggcgatggatggtgaggtgcgtggcgacggagaagcacaaggacgcggcggcggcgcggctcggcggcgtggaggtggagttcgccgacgaggaggactacgtcaagggcggcggcggcgagctgatctacgtgcaaatgcaggcgtccaagtccatggacagccagtccaagatctcctccaagctgctgcccatacccgatgaaaattcagttcttgatttggtcatcattggctgcggtccagctggcttatccctagcagcagagtcagctaagaaagggctcaatgttggtctcattggccctgatcttccattcacgaacaattacggtgtgtgggaggatgaattcaaagacctgggcctggagagctgcattgaacatgtctggaaggatactatcgtgtacctagacggtaacaagccaataatgattggccgtgcgtatggcagggttcacagggacttgctgcacgaggagttgctgagaagatgctatgacgctggagtcacatacctcagctcgaaggtggacaagatcatggaatctcctgatggacatcgggtagtctgttgtgaaggtgatcgtgaggtactttgcaggcttgcgattgttgcatctggggcagcatctggtaggcttctagagtacgaggtggaaaacaatccatatgatcccagcttaatggttttcatggactacagagattgcttcaaagacaaattctcacatcctgagcaaggaaatccaacgttcctctatgccatgcccatgtcatccacacgaattttctttgaggaaacatgcctagcttcaaaagaagcaatgccctttgacctccttaagaagcggttgatgtctcggttggatgcaatgggagttcatattcgaaaagtatacgaggaggaatggtcctacattcctgttggagggtccttaccaaatacagaccagaaaaatctcgcatttggtgcggcagcaagtatggtgcatcctgcaaccggatactcagtggttagatcattgtctgaagctccaagatatgcatctgtgatatctgacatcttgagaaaccgtgtctaccctggacaatatttgcctggaacctctcaaagttccagtccatcaatgcttgcatggagaacattatggccccaagaacggaaacgtcaacgatcattcttcctttttgggctggctttgataatccaactgaataacgaaggcattcagacattctttgaaacctttttccggttgcccaaatggatgtggcgaggattccttggttcgacgctttcttcagtggatctcatactctttgcattctacatgttcacaattgcgccgaaccaaatgcgaatgaaccttgtcagacatctcctctctgatccgaccggctcaacgatgatcaagacctacctgaccttattgtgcagaatgggaacacgtgaatacgtgatgcgtgtgctggaacaacaagtaggaggaataaaacccatggattatggatcttgtaatggattcgccatggccgaggcgacgcatggcgcgttggaggccgagatgagggagatctttgtccccttcagaggattctgcaccaggaatggggtgcacgtgtcggagttggtactggaagaggcagacgtgtcaaaggccttaatagagttcatcaccgtgaacaagatccagagcatcgcgctcggtgcatccaacagaaatgcattcaccaagaaattcaagaacgccgacgtgccgtccagcctgatgaagggcgcgccggactactgcaacatctacgtggtggcgaagggcaagtcggtgaacgtgaggctcgccaagtgcggcgtcgatggcggttgcggcggtggcggtggctacgagggcgactcatcgatcaggagcctgtacacgaggaggtgctcgagggggaagctgccgccggcgactccgtcgccggactcgtcgaggcggtcggtggacagccgcaccctgccggagctcaccacgcggccgccgttccgcgagcgctcgctcacgacctcgtcgtccaagcccgtcgtcctgtccagcagggcggcgcccgacggcgtcgacgggtcgtaccgctcgacgaggcggtccgtgtcgaacgagtccttcgtcggcgacctcgacttcggccagagctcgcgcttctcctccatggacttctgcgacagcctcgacatgtcgtcgctctccgccagcccacgggagagcagctcgcctctctccgccccgcagcgcgaggtggaggtggagatgcggcggctgaggctggagctgaagcagacgatggacatgtacaacgcggcgtgccgggaggcgatcaacgcgaagcagcggaccaaggagctgcagctgctgaagctggaggaggcgcggcggctggaggaggcgcggcacgcggaggaggcggcgctggcgatggcggagatggagaagaccaagtgccgcgcggccatggaggcggccgaggcggcgcagcggctggccgacctggaggcgcagcggcggcgcaacgccgaggtgcgcgcccgccgcgaggccgacgagaaggtccgcgccctggacgccatctccaaccacgacttccgctaccgccgctacaacatcgacgacatcgagctcgccaccgagcgcttctccgacgagctcaagatcggcgagggcggctacggccccgtctaccgcgcctccctcgaccacaccccggtggccatcaaggtgctccgccccgacgcgcagcagggccggaagcagttccagcaggaggtggaggtgctcagctgcatccgccacccaaacatggtgctcctcctcggcgcctgcccggactacggctgcctcgtctacgagtacatggacaacggcagcctcgaggaccgcctgttccgccgcggcggcacgccgccgatcccgtggagccagcggttcaggatctcggcggagatcgccaccgcgctgctgttcctccaccagaccaagccggagccgctggtgcaccgcgacctgaagccggccaacatcctgctcgaccgcaactacgtcagcaagatcagcgacgtcgggctggcgcgcctggtgccgccggcggtggcggacagcgtgacgcagtaccggctgacggcgacggcggggaccttctgctacatcgacccggagtaccagcagacggggaagctgggcgtcaagtccgacatctactccctcggcgtgctgctgctgcaggtgctcaccgcgcggccgcccatgggcctcacccaccacgtcgagaaggccatcgacgccggcaccttcgcccagatgctcgacgtcaccgtcaaggactggcccgtcgacgacgccatcggcttcgccaagctcgccctcaagtgcaccgaaatgcgccggagggaccgcccggacctcgccaccgtcatcctgccggagctcaaccgcctcaggaacctcggacacgcctacgaggcgcgcatgagcgccgccgccgccgacgccgccgcgcacgcccaggacaacgtcggctcgccgacggtggtgggcgcgtcgtggagaacggcggagagctaa

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Protein seq

MEFSGGATVSAPFGCCRAAWGAAAAEGRSRRFVPRAVEPRRRGRWMVRCVATEKHKDAAAARLGGVEVEFADEEDYVKGGGGELIYVQMQASKSMDSQSKISSKLLPIPDENSVLDLVIIGCGPAGLSLAAESAKKGLNVGLIGPDLPFTNNYGVWEDEFKDLGLESCIEHVWKDTIVYLDGNKPIMIGRAYGRVHRDLLHEELLRRCYDAGVTYLSSKVDKIMESPDGHRVVCCEGDREVLCRLAIVASGAASGRLLEYEVENNPYDPSLMVFMDYRDCFKDKFSHPEQGNPTFLYAMPMSSTRIFFEETCLASKEAMPFDLLKKRLMSRLDAMGVHIRKVYEEEWSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYSVVRSLSEAPRYASVISDILRNRVYPGQYLPGTSQSSSPSMLAWRTLWPQERKRQRSFFLFGLALIIQLNNEGIQTFFETFFRLPKWMWRGFLGSTLSSVDLILFAFYMFTIAPNQMRMNLVRHLLSDPTGSTMIKTYLTLLCRMGTREYVMRVLEQQVGGIKPMDYGSCNGFAMAEATHGALEAEMREIFVPFRGFCTRNGVHVSELVLEEADVSKALIEFITVNKIQSIALGASNRNAFTKKFKNADVPSSLMKGAPDYCNIYVVAKGKSVNVRLAKCGVDGGCGGGGGYEGDSSIRSLYTRRCSRGKLPPATPSPDSSRRSVDSRTLPELTTRPPFRERSLTTSSSKPVVLSSRAAPDGVDGSYRSTRRSVSNESFVGDLDFGQSSRFSSMDFCDSLDMSSLSASPRESSSPLSAPQREVEVEMRRLRLELKQTMDMYNAACREAINAKQRTKELQLLKLEEARRLEEARHAEEAALAMAEMEKTKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISNHDFRYRRYNIDDIELATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAQQGRKQFQQEVEVLSCIRHPNMVLLLGACPDYGCLVYEYMDNGSLEDRLFRRGGTPPIPWSQRFRISAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPAVADSVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVLTARPPMGLTHHVEKAIDAGTFAQMLDVTVKDWPVDDAIGFAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAAAADAAAHAQDNVGSPTVVGASWRTAES

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Gene Transcript Chromosome Start End Strand Source
OsLima_01g0021870 OsLima_01g0021870.02 Chr01 23698611 23702540 + IsoSeq
CDS seq

cacgcagagaccagtagctttcgcagcggcggcagcggcagccaccacctcctcctcctcctccccctcctccccggcgacgcactcctcctcctcctcatccgacggtgcggaaccaagcgatggagttctccggcggcgcgaccgtgtcggcgccgttcggttgctgccgtgcggcgtggggcgcggcggcggcggagggaaggagcaggaggtttgtgccgcgcgcggtggagccgcggcggcgcgggcgatgga

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Protein seq

HAETSSFRSGGSGSHHLLLLLPLLPGDALLLLLIRRCGTKRWSSPAARPCRRRSVAAVRRGARRRRREGAGGLCRARWSRGGAGDG

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 23698611 23699045 + OsLima_01g0021870.02 OsLima_01g0021870.02,OsLima_01g0021870.01 All
A5 Chr01 23700827 23701047 + OsLima_01g0021870.02 OsLima_01g0021870.02,OsLima_01g0021870.01 All

Expression

Leaf Root Panicle
FPKM 0.782381 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0581300 RBH 6.059603 3.797362 2.573657
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g39960 RBH 3.956597 2.432234 0.640951
Nipponbare | IRGSP 1.0 | RAP-db Os01g0581300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0022900 RBH 0.0 0.0 13.611523
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0022490 RBH 1.543756 0.0 1.881733
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0022820 RBH 8.913886 0.0 8.456513
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0022220 RBH 0.000000 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0021940 RBH 26.309246 0.0 28.732140
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0377000 RBH 13.521719 2.0389015 3.6997935
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0021900 RBH 2.067067 0.083541 15.664396
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0365300 RBH 16.224903 0.3062055 2.190393
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0028700 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0021810 RBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0022070 RBH 14.610539 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0022150 RBH 0.000000 0.0 4.596161
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0021920 RBH 2.442947 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G022230 RBH 1.960856 0.0 5.568051
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0021930 RBH 0.0 0.0 76.316483
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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