Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g39960 | OGI:01070210 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:22534999-22538743 | ||||||||
| Gene Symbol | OsLCYe, OsLCYepsilon | ||||||||||
| DNA seq | CAGCAGCCAGCAGCAGACGCAGAGACCAGTAGCTTTCGCAGAGGCGGCAGCCACCACCGCCTCCTCCTCCTCCTCCTCATCCGACGGTGTGCAACCAAGCGATGGAGTTCTCCGGCGGCGCGACCGTGTCGGCGCCGTTCGGTTGCTGCCGTGCGGCGTGGGGCGCCGCGGCGGCGGGTGCGGGGGCGGAGGGAAGGAGCAGGAGGGTTGTGCCGCGCGCGGTGGAGCCGCGGCGGCGCGGGCGGTGGATGGTGAGGTGCGTGGCGACGGAGAAGCACAAGGACGCGGCGGCGCGGCGCGGCGGCGTGGAGGTGGAGTTCGCCGACGAGGAGGACTACGTCAAGGGCGGCGGCGGCGAGCTTCTCTACGTGCAAATGCAGGCGTCCAAGTCCATGGACAGCCAGTCCAAGATCTCCTCCAAGGTAGGAGGAGTAGCAGTAAATAAATCATATCACTACTCCAATTTTTTTTGTTTGTTTATGCATGCCTAGATGATCTTGATTTTAGCAGTTAATTAGCATTATGCAAGGTCGAGATCTGGCTTTATACAAAACCCACAATCACCTTGCTGCCATGGTTGCCGTTTACAAGAAAGAATCAAACACGAAATTCATCAACAGCATGAATGAAACACTGTTGCATCGCCCTGATCACGCGCGTGCTACGACGACGGGTGTGGAATGTTGATTCACGTGATGCTATCACGAATTCACTCCATATCTTGACCAAAAAAAAAAAAAGAGCAGCCTCTGGTTGCCCATGCTTGCTGCTGCCTGCCATATCTCTGTGGAGCTTGGACTATTCTCCATGTCTCCTGTAATGGGAGCTCACGTCGTCGCCTGTACAAAAGGTGTTAATTAGGGGATAAGTTAAGAGTATCTCATACTGTTCTCAACTCAACTGCTGACTAATTACACCTTCGGATGCAACTTGGAACGTACTGTTGCATTAATTATTGTCTGCTTGCAAATTTCTCAGAGATGTTGAATTTGATGAAGTGTACGTGCGTCGCATTTGCAGTCCAACATCACACCTTTGACTTGATGTGATTCAAGCAACAAGTGAAGTGCTAGGCTAAACACAAGCACAGTTCCCCGAAATCATGCCATTTATTCTTGACACATGGACATCCTGGAAATTGTTCAAAGTTTCTAGACTGCTAGGAATGCGAATAACTTGTACTGAACTTTTGAAACATTTTTGTCAGCCCAATCAGGATTTTTTTTAGTTTATTTCCTGAAACTCTGCATTGGAACGAATAAATAAATGGTGTCTCAAGAAAATAAAGCACGTGCTCTGAATCTTTGTGTGCAGCTGCTGCCCATACCCGATGAAAATTCAGTTCTTGATTTGGTCATCATTGGCTGCGGTCCAGCTGGCTTATCCCTAGCAGCAGAGTCAGCTAAGAAAGGGCTCAATGTTGGTCTCATTGGCCCTGATCTTCCATTCACGAACAACTACGGTGTGTGGGAGGATGAATTCAAAGGTAGCATACTATTTTCAGCACTGAATAACATTGTTGCCATCATAATTTGGTACATGATGGACTTATGGCTCTTGATCTTTTGCTATCCAGACCTGGGCCTGGAGAGCTGCATTGAACATGTCTGGAAGGATACTATCGTGTACCTAGACGGTAACAAGCCAATAATGATTGGCCGTGCGTATGGCAGGGTTCACAGGGACTTGCTGCACGAGGAGTTGCTGAGACGGTAAATTTTCAGTTAGCAATCTTGAGAGTAAACAGAGTCAGGCAAAGTGATACAAAATTATTGATGAAAAATTATACTCTAAAAACTGTCAGATGCTATGACGCTGGCGTCACATACCTCAGCTCGAAGGTGGACAAGATCATGGAATCTCCTGATGGACATCGGGTAGTCTGTTGTGAAGGGGATCGTGAGGTACTTTGCAGGCTTGCCATTGTTGCATCTGGGGCAGCATCTGGTAGGCTTCTAGAGTACGAGGTTGGTGGTCCGCGTGTTTGTGTGCAGACTGCATATGGTGTCGAAGTCGAGGTATGCACAACTCCTATAGAACTTACTCCCCTCGAGAGTTTAGAATAGTTTCCCTTCTGTCGTCGTGTTTCTACGAGCATTTTATTCATATTGTTTCAAGCTGAAAATTTTAGATATGTTATTTGGGCACATGTCATTCATCTTTCACAATGATTTGAAAATTTTCAGGTGGAAAACAATCCATATGATCCCAGCTTAATGGTTTTCATGGACTACAGAGATTGCTTCAAAGACAAATTCTCACATCCTGAGCAAGGAAATCCAACGTTCCTCTATGCCATGCCCATGTCATCCACACGAATTTTCTTTGAGGTCCATATGAGAAACTTTATCACAATTTATTCCTCCGACTAGTATTTTCCCATGCTTTTGTGTTGCTGATGATAATTATTTCAAGACAGGAAACATGCCTAGCTTCTAAAGAAGCAATGCCCTTTGACCTCCTTAAAAAGCGGTTGATGTCTCGGTTGGATGCAATGGGAGTTCATATTCGAAAAGTATACGAGGAGGTAACAAGTTATGGCTTGGTGTCACTAGTTGTTTCTCTTGCATAGGTGAAGTGGAAACTTAACCTAAATGCTGAACTCTTGATTTCAGGAATGGTCCTACATTCCTGTTGGAGGGTCCTTACCAAATACAGACCAGAAAAATCTCGCATTTGGTGCGGCAGCAAGTATGGTGCATCCTGCAACCGGTACTAACAAATCCTCAATCCGTACTTTCAATTTCTCTTGTATTTACAGGCAATAATATAATATTTATCTGTCAAAAACATAGGATACTCGGTGGTTAGATCATTGTCTGAAGCTCCAAGATATGCATCTGTGATATCTGATATCTTGAGAAACCGTGTCTACCCTGGAGAATATTTGCCTGGAACCTCTCAAAGTTCCAGTCCATCAATGCTTGGTAAGCATTCTTCTGATATTTATTCAATTTTATTGACAAGCACACCAGTATTACAAATTGGAGTACATTGCTTCAGATGAGGGCAGTATTTTAGTATAATTTTGGAAATGTCAGGAACATTTTCTGGTACTAATTGCTATGCGGTGTTGCAGCATGGAGAACATTATGGCCCCAAGAACGGAAACGTCAACGATCATTCTTCCTTTTTGGGCTGGCTTTGATAATCCAACTGAATAACGAAGGCATTCAGACATTCTTTGAAACCTTTTTCCGGTTGCCCAAATGGTAATTCTACTCTTGATTGCATTTGCCTCTGTTTTCAGTCTATTTACAAATACCATTATGTATGACCTGAAGATTGCCACCCAACAAAGTGTTCATCACTGTTCTTTGTTACTATCAGGATGTGGCGAGGATTCCTTGGTTCGACGCTTTCTTCAGTGGATCTCATACTCTTTGCATTCTACATGTTCACAATTGCGCCGAACCAAATGCGAATGAACCTTGTCAGACATCTCCTCTCTGATCCGACCGGCTCAACGATGATCAAGACCTACCTGACCTTGTAAAACCATTTCAGCAGTCTACAAGAATATTAGGAAATGTACAGTTTTGTAGTTTGTACATAACATAGTGAGAGCCAGAGGATATGGGGGTTGGGGGGTTACTTATCATGCTAGAACAACAAAACACTGCAAGAATTTTATGCATGAATTTGGCAAATGGAATAGATTATGCAGAATGGGAACACGTGAATACGTGATGCGTGTGCTGGAACAACAAGTAGGAGGAATAAAACCCATGGATTATGGATCTTG
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| CDS seq | ATGGAGTTCTCCGGCGGCGCGACCGTGTCGGCGCCGTTCGGTTGCTGCCGTGCGGCGTGGGGCGCCGCGGCGGCGGGTGCGGGGGCGGAGGGAAGGAGCAGGAGGGTTGTGCCGCGCGCGGTGGAGCCGCGGCGGCGCGGGCGGTGGATGGTGAGGTGCGTGGCGACGGAGAAGCACAAGGACGCGGCGGCGCGGCGCGGCGGCGTGGAGGTGGAGTTCGCCGACGAGGAGGACTACGTCAAGGGCGGCGGCGGCGAGCTTCTCTACGTGCAAATGCAGGCGTCCAAGTCCATGGACAGCCAGTCCAAGATCTCCTCCAAGCTGCTGCCCATACCCGATGAAAATTCAGTTCTTGATTTGGTCATCATTGGCTGCGGTCCAGCTGGCTTATCCCTAGCAGCAGAGTCAGCTAAGAAAGGGCTCAATGTTGGTCTCATTGGCCCTGATCTTCCATTCACGAACAACTACGGTGTGTGGGAGGATGAATTCAAAGACCTGGGCCTGGAGAGCTGCATTGAACATGTCTGGAAGGATACTATCGTGTACCTAGACGGTAACAAGCCAATAATGATTGGCCGTGCGTATGGCAGGGTTCACAGGGACTTGCTGCACGAGGAGTTGCTGAGACGATGCTATGACGCTGGCGTCACATACCTCAGCTCGAAGGTGGACAAGATCATGGAATCTCCTGATGGACATCGGGTAGTCTGTTGTGAAGGGGATCGTGAGGTACTTTGCAGGCTTGCCATTGTTGCATCTGGGGCAGCATCTGGTAGGCTTCTAGAGTACGAGGTTGGTGGTCCGCGTGTTTGTGTGCAGACTGCATATGGTGTCGAAGTCGAGGTGGAAAACAATCCATATGATCCCAGCTTAATGGTTTTCATGGACTACAGAGATTGCTTCAAAGACAAATTCTCACATCCTGAGCAAGGAAATCCAACGTTCCTCTATGCCATGCCCATGTCATCCACACGAATTTTCTTTGAGGAAACATGCCTAGCTTCTAAAGAAGCAATGCCCTTTGACCTCCTTAAAAAGCGGTTGATGTCTCGGTTGGATGCAATGGGAGTTCATATTCGAAAAGTATACGAGGAGGAATGGTCCTACATTCCTGTTGGAGGGTCCTTACCAAATACAGACCAGAAAAATCTCGCATTTGGTGCGGCAGCAAGTATGGTGCATCCTGCAACCGGATACTCGGTGGTTAGATCATTGTCTGAAGCTCCAAGATATGCATCTGTGATATCTGATATCTTGAGAAACCGTGTCTACCCTGGAGAATATTTGCCTGGAACCTCTCAAAGTTCCAGTCCATCAATGCTTGCATGGAGAACATTATGGCCCCAAGAACGGAAACGTCAACGATCATTCTTCCTTTTTGGGCTGGCTTTGATAATCCAACTGAATAACGAAGGCATTCAGACATTCTTTGAAACCTTTTTCCGGTTGCCCAAATGGATGTGGCGAGGATTCCTTGGTTCGACGCTTTCTTCAGTGGATCTCATACTCTTTGCATTCTACATGTTCACAATTGCGCCGAACCAAATGCGAATGAACCTTGTCAGACATCTCCTCTCTGATCCGACCGGCTCAACGATGATCAAGACCTACCTGACCTTGTAA
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| Protein seq | MEFSGGATVSAPFGCCRAAWGAAAAGAGAEGRSRRVVPRAVEPRRRGRWMVRCVATEKHKDAAARRGGVEVEFADEEDYVKGGGGELLYVQMQASKSMDSQSKISSKLLPIPDENSVLDLVIIGCGPAGLSLAAESAKKGLNVGLIGPDLPFTNNYGVWEDEFKDLGLESCIEHVWKDTIVYLDGNKPIMIGRAYGRVHRDLLHEELLRRCYDAGVTYLSSKVDKIMESPDGHRVVCCEGDREVLCRLAIVASGAASGRLLEYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDCFKDKFSHPEQGNPTFLYAMPMSSTRIFFEETCLASKEAMPFDLLKKRLMSRLDAMGVHIRKVYEEEWSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYSVVRSLSEAPRYASVISDILRNRVYPGEYLPGTSQSSSPSMLAWRTLWPQERKRQRSFFLFGLALIIQLNNEGIQTFFETFFRLPKWMWRGFLGSTLSSVDLILFAFYMFTIAPNQMRMNLVRHLLSDPTGSTMIKTYLTL |
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| Function | Lycopene epsilon cyclase, chloroplastic [UniProtKB/Swiss-Prot:Q38932] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g39960 | LOC_Os01g39960.1 | Chr01 | 22534999 | 22538743 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGTTCTCCGGCGGCGCGACCGTGTCGGCGCCGTTCGGTTGCTGCCGTGCGGCGTGGGGCGCCGCGGCGGCGGGTGCGGGGGCGGAGGGAAGGAGCAGGAGGGTTGTGCCGCGCGCGGTGGAGCCGCGGCGGCGCGGGCGGTGGATGGTGAGGTGCGTGGCGACGGAGAAGCACAAGGACGCGGCGGCGCGGCGCGGCGGCGTGGAGGTGGAGTTCGCCGACGAGGAGGACTACGTCAAGGGCGGCGGCGGCGAGCTTCTCTACGTGCAAATGCAGGCGTCCAAGTCCATGGACAGCCAGTCCAAGATCTCCTCCAAGCTGCTGCCCATACCCGATGAAAATTCAGTTCTTGATTTGGTCATCATTGGCTGCGGTCCAGCTGGCTTATCCCTAGCAGCAGAGTCAGCTAAGAAAGGGCTCAATGTTGGTCTCATTGGCCCTGATCTTCCATTCACGAACAACTACGGTGTGTGGGAGGATGAATTCAAAGACCTGGGCCTGGAGAGCTGCATTGAACATGTCTGGAAGGATACTATCGTGTACCTAGACGGTAACAAGCCAATAATGATTGGCCGTGCGTATGGCAGGGTTCACAGGGACTTGCTGCACGAGGAGTTGCTGAGACGATGCTATGACGCTGGCGTCACATACCTCAGCTCGAAGGTGGACAAGATCATGGAATCTCCTGATGGACATCGGGTAGTCTGTTGTGAAGGGGATCGTGAGGTACTTTGCAGGCTTGCCATTGTTGCATCTGGGGCAGCATCTGGTAGGCTTCTAGAGTACGAGGTTGGTGGTCCGCGTGTTTGTGTGCAGACTGCATATGGTGTCGAAGTCGAGGTGGAAAACAATCCATATGATCCCAGCTTAATGGTTTTCATGGACTACAGAGATTGCTTCAAAGACAAATTCTCACATCCTGAGCAAGGAAATCCAACGTTCCTCTATGCCATGCCCATGTCATCCACACGAATTTTCTTTGAGGAAACATGCCTAGCTTCTAAAGAAGCAATGCCCTTTGACCTCCTTAAAAAGCGGTTGATGTCTCGGTTGGATGCAATGGGAGTTCATATTCGAAAAGTATACGAGGAGGAATGGTCCTACATTCCTGTTGGAGGGTCCTTACCAAATACAGACCAGAAAAATCTCGCATTTGGTGCGGCAGCAAGTATGGTGCATCCTGCAACCGGATACTCGGTGGTTAGATCATTGTCTGAAGCTCCAAGATATGCATCTGTGATATCTGATATCTTGAGAAACCGTGTCTACCCTGGAGAATATTTGCCTGGAACCTCTCAAAGTTCCAGTCCATCAATGCTTGCATGGAGAACATTATGGCCCCAAGAACGGAAACGTCAACGATCATTCTTCCTTTTTGGGCTGGCTTTGATAATCCAACTGAATAACGAAGGCATTCAGACATTCTTTGAAACCTTTTTCCGGTTGCCCAAATGGATGTGGCGAGGATTCCTTGGTTCGACGCTTTCTTCAGTGGATCTCATACTCTTTGCATTCTACATGTTCACAATTGCGCCGAACCAAATGCGAATGAACCTTGTCAGACATCTCCTCTCTGATCCGACCGGCTCAACGATGATCAAGACCTACCTGACCTTGTAA
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| Protein seq | MEFSGGATVSAPFGCCRAAWGAAAAGAGAEGRSRRVVPRAVEPRRRGRWMVRCVATEKHKDAAARRGGVEVEFADEEDYVKGGGGELLYVQMQASKSMDSQSKISSKLLPIPDENSVLDLVIIGCGPAGLSLAAESAKKGLNVGLIGPDLPFTNNYGVWEDEFKDLGLESCIEHVWKDTIVYLDGNKPIMIGRAYGRVHRDLLHEELLRRCYDAGVTYLSSKVDKIMESPDGHRVVCCEGDREVLCRLAIVASGAASGRLLEYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDCFKDKFSHPEQGNPTFLYAMPMSSTRIFFEETCLASKEAMPFDLLKKRLMSRLDAMGVHIRKVYEEEWSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYSVVRSLSEAPRYASVISDILRNRVYPGEYLPGTSQSSSPSMLAWRTLWPQERKRQRSFFLFGLALIIQLNNEGIQTFFETFFRLPKWMWRGFLGSTLSSVDLILFAFYMFTIAPNQMRMNLVRHLLSDPTGSTMIKTYLTL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.956597 | 2.432234 | 0.640951 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0581300 | RBH | 6.059603 | 3.797362 | 2.573657 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0581300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022890 | RBH | 3.643014 | 0.0 | 7.639718 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022490 | RBH | 1.543756 | 0.0 | 1.881733 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022820 | RBH | 8.913886 | 0.0 | 8.456513 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022210 | RBH | 1.031171 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021940 | RBH | 26.309246 | 0.0 | 28.732140 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021900 | SBH | 2.067067 | 0.083541 | 15.664396 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0365300 | RBH | 16.224903 | 0.3062055 | 2.190393 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021870 | RBH | 0.782381 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021800 | RBH | 1.824358 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022070 | RBH | 14.610539 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022140 | RBH | 4.772290 | 0.0 | 2.230770 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021920 | RBH | 2.442947 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022230 | RBH | 1.960856 | 0.0 | 5.568051 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021920 | RBH | 12.290015 | 4.069574 | 8.091373 |
