Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0022220 | OGI:01070220 | 14/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:22759111-22762129 | ||||||||
| Gene Symbol | RLCK39, OsRLCK39 | ||||||||||
| DNA seq | ATCACCTCCATCCATCCATCACATTACGGTCGGCGTCGGCGGCGGCGACGACGAAGGCGGGTGAGATCTCACCGGAGAAGTGCAGGCGGGCAGGATGCAAGGAGGAGGGCCACTCAGCCCCGACGAGCACCGGGCCACCTCGCCGCCGGGGATAATGCACCACCAGCCGGCGATGACGATCGTCGTCGCCGTGGACCGTGACCGGAACAGCCAGCTCGCCGTGAAGTGGGTCGTCGACCACCTCCTCACCGGCGCCTCCAACATCATCCTCCTCCACATCGCCGTCCACCCCCCTGCCGCCAACCGTACGTCGATCGCCGGATCAGCCATTGCCATGCGTCTCTCTGCTGCAACTGCAAGAGATCGTAAAACTGATGTGCATTTTTTGTTTTTTTTTTGGTGACGTAGATGGATTCGCCATGGCCGAGGCGACGCATGGCGCGTTGGAGGCCGAGATGAGGGAGATCTTTGTCCCCTTCAGAGGATTCTGCACCAGGAATGGGGTAATCAAATATTTAGTTTCAGATCAACACAAGAAATTAATTCTTTCAGATCAAAGACATGAACAAAAAAATACTTAATTACGAGAACGCATTTTGTTTTCCATCGTTGATCGATCAGGTGCATGTATCGGAGTTGGTACTGGAAGAGGCAGACGTGTCAAAGGCCTTAATAGAGTTCATCACCGTGAACAAGATCCAGAGCATCGCGCTCGGCGCATCCAACAGAAATGCATTCACCAAGTAAATCAATCAAAGATTAATAATTAGTTTCGTTTTGATTTTGATCCGATTTCGATCCAATTTTAAGGTGTTGTTCTTGGTGGTGATGGTGGTGCTGCATTGTTTGATGGTCAGGAAATTCAAGAACGCCGACGTGCCGTCCAGCCTGATGAAGGGCGCGCCGGACTACTGCAACATCTACGTGGTGGCGAAGGGCAAGTCGGTGAACGTGAGGCTCGCCAAGTGCGGCGTCGATGGCGGTTGCGGCGGTGGCGGTGGCTACGAGGGCGACTCATCGATCAGGAGCCTGTACACGAGGAGGTGCTCGAGGGGGAAGCTGCCGCCGGCGACGCCGTCGCCGGACTCGTCGAGGCGGTCGGTGGACAGCCGCACCCTGCCGGAGCTCACCACGCGGCCGCCGTTCCGCGAGCGCTCGCTCCCGTCCTCGTCGTCCAAGCCCGTCGTGCTGTCCAGCAGGGCGGCGCCCGACTGCGGCGGCGGCGGCGTCGACGGGTCGTACCGCTCCACGAGGCGGTCCGTGTCGAACGAGTCCTTCGTGGGCGACCTCGACTTCGGCCAGAGCTCGCGCTTCTCCTCCATGGACTTCTGCGACAGCCTCGACATGTCGTCGCTCTCCGCCAGCCCACGGGAGAGCAGCTCGCCTCTCTCCGCCGTGCGTTCTTGGACCACTTCGACTGCGACGCCATTGCTGCGACGCCATTGCTGACGTGGGTGTGTGTGCAGCCGCAGCGCGAGGTGGAGGTGGAGATGCGGCGGCTGAGGCTGGAGCTGAAGCAGACGATGGACATGTACAACGCGGCGTGCCGGGAGGCGATCAACGCGAAGCAGCGGACCAAGGAGCTGCAGCTGCTGAAGCTGGAGGAGGCGCGGCGGCTGGAGGAGGCGCGGCACGCGGAGGAGGCGGCGCTGGCGATGGCGGAGATGGAGAAGACCAAGTGCCGCGCGGCTATGGAGGCGGCCGAGGCGGCGCAGCGGCTGGCCGACCTGGAGGCCCAGCGGCGTCGCAACGCCGAGGTGCGCGCCCGCCGCGAGGCCGACGAGAAGGTCCGCGCCCTGGACGCCATCTCCAGCCACGACTTCCGCTACCGCCGCTACAACATCGACGACATCGAGCTCGCCACCGAGCGCTTCTCCGACGAGCTCAAGATCGGCGAGGGCGGCTACGGCCCCGTCTACCGCGCCTCCCTCGACCACACCCCGGTGGCCATCAAGGTGCTCCGCCCCGACGCGCAGCAGGGCCGGAAGCAGTTCCAGCAGGAGGTGGAGGTGCTCAGCTGCATCCGCCACCCAAACATGGTGCTCCTCCTCGGCGCCTGCCCGGACTACGGCTGCCTCGTCTACGAGTACATGGACAACGGCAGCCTCGAGGACCGCCTGTTCCGCCGCGGCGGCACGCCGCCGATCCCGTGGAGCCAGCGGTTCAGGATCTCGGCGGAGATCGCCACCGCGCTGCTGTTCCTCCACCAGACCAAGCCGGAGCCGCTGGTGCACCGCGACCTGAAGCCGGCCAACATCCTGCTCGACCGCAACTACGTCAGCAAGATCAGCGACGTCGGGCTGGCGCGCCTCGTGCCGCCGGCGGTGGCGGACAGCGTGACGCAGTACCGGCTGACGGCGACGGCGGGGACCTTCTGCTACATCGACCCGGAGTACCAGCAGACGGGGAAGCTGGGCGTCAAGTCCGACATCTACTCCCTCGGCGTGCTGCTGCTGCAGGTGCTCACCGCGCGGCCGCCCATGGGCCTCACCCACCACGTCGAGAAGGCCATCGACGCCGGCACCTTCGCCCAGATGCTCGACGTCACCGTCAAGGACTGGCCCGTCGACGACGCCATCGGCTTCGCCAAGCTCGCCCTCAAGTGCACCGAAATGCGCCGGAGGGACCGCCCGGACCTCGCCACCGTCATCCTGCCGGAGCTCAACCGCCTCAGGAACCTCGGACACGCCTACGAGGCGCGCATGAGCGCCGCCGCCGCCGACGCCGCCGCGCACGCCCAGGACAACGTCGGCTCGCCGACGGTGGTGGGCGCGTCGTGGAGAACGGCGGAGAGCTAAGCTAGCGGGAGGCCATGTCAGTTATTTTAGAGTCACAGGAGAGGGTGGAGTTCACACGGTACATTTACGGTCTTTTTTTGTCGGTGTAAATCCTTAAATACCTTGGTGTTTGTACAGTTGACAAAAAAAATTAACATGTTCTGCGGTGGTTGGCTCAAAATTTTGAGGTGTCCGAATGATTCTTTTTTCCTGGTTATACAGCAGAAAGATTAAAAAAAATT
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| CDS seq | ATGCAAGGAGGAGGGCCACTCAGCCCCGACGAGCACCGGGCCACCTCGCCGCCGGGGATAATGCACCACCAGCCGGCGATGACGATCGTCGTCGCCGTGGACCGTGACCGGAACAGCCAGCTCGCCGTGAAGTGGGTCGTCGACCACCTCCTCACCGGCGCCTCCAACATCATCCTCCTCCACATCGCCGTCCACCCCCCTGCCGCCAACCATGGATTCGCCATGGCCGAGGCGACGCATGGCGCGTTGGAGGCCGAGATGAGGGAGATCTTTGTCCCCTTCAGAGGATTCTGCACCAGGAATGGGGTGCATGTATCGGAGTTGGTACTGGAAGAGGCAGACGTGTCAAAGGCCTTAATAGAGTTCATCACCGTGAACAAGATCCAGAGCATCGCGCTCGGCGCATCCAACAGAAATGCATTCACCAAGAAATTCAAGAACGCCGACGTGCCGTCCAGCCTGATGAAGGGCGCGCCGGACTACTGCAACATCTACGTGGTGGCGAAGGGCAAGTCGGTGAACGTGAGGCTCGCCAAGTGCGGCGTCGATGGCGGTTGCGGCGGTGGCGGTGGCTACGAGGGCGACTCATCGATCAGGAGCCTGTACACGAGGAGGTGCTCGAGGGGGAAGCTGCCGCCGGCGACGCCGTCGCCGGACTCGTCGAGGCGGTCGGTGGACAGCCGCACCCTGCCGGAGCTCACCACGCGGCCGCCGTTCCGCGAGCGCTCGCTCCCGTCCTCGTCGTCCAAGCCCGTCGTGCTGTCCAGCAGGGCGGCGCCCGACTGCGGCGGCGGCGGCGTCGACGGGTCGTACCGCTCCACGAGGCGGTCCGTGTCGAACGAGTCCTTCGTGGGCGACCTCGACTTCGGCCAGAGCTCGCGCTTCTCCTCCATGGACTTCTGCGACAGCCTCGACATGTCGTCGCTCTCCGCCAGCCCACGGGAGAGCAGCTCGCCTCTCTCCGCCCCGCAGCGCGAGGTGGAGGTGGAGATGCGGCGGCTGAGGCTGGAGCTGAAGCAGACGATGGACATGTACAACGCGGCGTGCCGGGAGGCGATCAACGCGAAGCAGCGGACCAAGGAGCTGCAGCTGCTGAAGCTGGAGGAGGCGCGGCGGCTGGAGGAGGCGCGGCACGCGGAGGAGGCGGCGCTGGCGATGGCGGAGATGGAGAAGACCAAGTGCCGCGCGGCTATGGAGGCGGCCGAGGCGGCGCAGCGGCTGGCCGACCTGGAGGCCCAGCGGCGTCGCAACGCCGAGGTGCGCGCCCGCCGCGAGGCCGACGAGAAGGTCCGCGCCCTGGACGCCATCTCCAGCCACGACTTCCGCTACCGCCGCTACAACATCGACGACATCGAGCTCGCCACCGAGCGCTTCTCCGACGAGCTCAAGATCGGCGAGGGCGGCTACGGCCCCGTCTACCGCGCCTCCCTCGACCACACCCCGGTGGCCATCAAGGTGCTCCGCCCCGACGCGCAGCAGGGCCGGAAGCAGTTCCAGCAGGAGGTGGAGGTGCTCAGCTGCATCCGCCACCCAAACATGGTGCTCCTCCTCGGCGCCTGCCCGGACTACGGCTGCCTCGTCTACGAGTACATGGACAACGGCAGCCTCGAGGACCGCCTGTTCCGCCGCGGCGGCACGCCGCCGATCCCGTGGAGCCAGCGGTTCAGGATCTCGGCGGAGATCGCCACCGCGCTGCTGTTCCTCCACCAGACCAAGCCGGAGCCGCTGGTGCACCGCGACCTGAAGCCGGCCAACATCCTGCTCGACCGCAACTACGTCAGCAAGATCAGCGACGTCGGGCTGGCGCGCCTCGTGCCGCCGGCGGTGGCGGACAGCGTGACGCAGTACCGGCTGACGGCGACGGCGGGGACCTTCTGCTACATCGACCCGGAGTACCAGCAGACGGGGAAGCTGGGCGTCAAGTCCGACATCTACTCCCTCGGCGTGCTGCTGCTGCAGGTGCTCACCGCGCGGCCGCCCATGGGCCTCACCCACCACGTCGAGAAGGCCATCGACGCCGGCACCTTCGCCCAGATGCTCGACGTCACCGTCAAGGACTGGCCCGTCGACGACGCCATCGGCTTCGCCAAGCTCGCCCTCAAGTGCACCGAAATGCGCCGGAGGGACCGCCCGGACCTCGCCACCGTCATCCTGCCGGAGCTCAACCGCCTCAGGAACCTCGGACACGCCTACGAGGCGCGCATGAGCGCCGCCGCCGCCGACGCCGCCGCGCACGCCCAGGACAACGTCGGCTCGCCGACGGTGGTGGGCGCGTCGTGGAGAACGGCGGAGAGCTAA
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| Protein seq | MQGGGPLSPDEHRATSPPGIMHHQPAMTIVVAVDRDRNSQLAVKWVVDHLLTGASNIILLHIAVHPPAANHGFAMAEATHGALEAEMREIFVPFRGFCTRNGVHVSELVLEEADVSKALIEFITVNKIQSIALGASNRNAFTKKFKNADVPSSLMKGAPDYCNIYVVAKGKSVNVRLAKCGVDGGCGGGGGYEGDSSIRSLYTRRCSRGKLPPATPSPDSSRRSVDSRTLPELTTRPPFRERSLPSSSSKPVVLSSRAAPDCGGGGVDGSYRSTRRSVSNESFVGDLDFGQSSRFSSMDFCDSLDMSSLSASPRESSSPLSAPQREVEVEMRRLRLELKQTMDMYNAACREAINAKQRTKELQLLKLEEARRLEEARHAEEAALAMAEMEKTKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISSHDFRYRRYNIDDIELATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAQQGRKQFQQEVEVLSCIRHPNMVLLLGACPDYGCLVYEYMDNGSLEDRLFRRGGTPPIPWSQRFRISAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPAVADSVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVLTARPPMGLTHHVEKAIDAGTFAQMLDVTVKDWPVDDAIGFAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAAAADAAAHAQDNVGSPTVVGASWRTAES |
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| Function | U-box domain-containing protein 35 [UniProtKB/Swiss-Prot:Q9SW11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0022220 | OsARC_01g0022220.01 | Chr01 | 22759111 | 22762129 | + | NAM | ||
| CDS seq | ATGCAAGGAGGAGGGCCACTCAGCCCCGACGAGCACCGGGCCACCTCGCCGCCGGGGATAATGCACCACCAGCCGGCGATGACGATCGTCGTCGCCGTGGACCGTGACCGGAACAGCCAGCTCGCCGTGAAGTGGGTCGTCGACCACCTCCTCACCGGCGCCTCCAACATCATCCTCCTCCACATCGCCGTCCACCCCCCTGCCGCCAACCATGGATTCGCCATGGCCGAGGCGACGCATGGCGCGTTGGAGGCCGAGATGAGGGAGATCTTTGTCCCCTTCAGAGGATTCTGCACCAGGAATGGGGTGCATGTATCGGAGTTGGTACTGGAAGAGGCAGACGTGTCAAAGGCCTTAATAGAGTTCATCACCGTGAACAAGATCCAGAGCATCGCGCTCGGCGCATCCAACAGAAATGCATTCACCAAGAAATTCAAGAACGCCGACGTGCCGTCCAGCCTGATGAAGGGCGCGCCGGACTACTGCAACATCTACGTGGTGGCGAAGGGCAAGTCGGTGAACGTGAGGCTCGCCAAGTGCGGCGTCGATGGCGGTTGCGGCGGTGGCGGTGGCTACGAGGGCGACTCATCGATCAGGAGCCTGTACACGAGGAGGTGCTCGAGGGGGAAGCTGCCGCCGGCGACGCCGTCGCCGGACTCGTCGAGGCGGTCGGTGGACAGCCGCACCCTGCCGGAGCTCACCACGCGGCCGCCGTTCCGCGAGCGCTCGCTCCCGTCCTCGTCGTCCAAGCCCGTCGTGCTGTCCAGCAGGGCGGCGCCCGACTGCGGCGGCGGCGGCGTCGACGGGTCGTACCGCTCCACGAGGCGGTCCGTGTCGAACGAGTCCTTCGTGGGCGACCTCGACTTCGGCCAGAGCTCGCGCTTCTCCTCCATGGACTTCTGCGACAGCCTCGACATGTCGTCGCTCTCCGCCAGCCCACGGGAGAGCAGCTCGCCTCTCTCCGCCCCGCAGCGCGAGGTGGAGGTGGAGATGCGGCGGCTGAGGCTGGAGCTGAAGCAGACGATGGACATGTACAACGCGGCGTGCCGGGAGGCGATCAACGCGAAGCAGCGGACCAAGGAGCTGCAGCTGCTGAAGCTGGAGGAGGCGCGGCGGCTGGAGGAGGCGCGGCACGCGGAGGAGGCGGCGCTGGCGATGGCGGAGATGGAGAAGACCAAGTGCCGCGCGGCTATGGAGGCGGCCGAGGCGGCGCAGCGGCTGGCCGACCTGGAGGCCCAGCGGCGTCGCAACGCCGAGGTGCGCGCCCGCCGCGAGGCCGACGAGAAGGTCCGCGCCCTGGACGCCATCTCCAGCCACGACTTCCGCTACCGCCGCTACAACATCGACGACATCGAGCTCGCCACCGAGCGCTTCTCCGACGAGCTCAAGATCGGCGAGGGCGGCTACGGCCCCGTCTACCGCGCCTCCCTCGACCACACCCCGGTGGCCATCAAGGTGCTCCGCCCCGACGCGCAGCAGGGCCGGAAGCAGTTCCAGCAGGAGGTGGAGGTGCTCAGCTGCATCCGCCACCCAAACATGGTGCTCCTCCTCGGCGCCTGCCCGGACTACGGCTGCCTCGTCTACGAGTACATGGACAACGGCAGCCTCGAGGACCGCCTGTTCCGCCGCGGCGGCACGCCGCCGATCCCGTGGAGCCAGCGGTTCAGGATCTCGGCGGAGATCGCCACCGCGCTGCTGTTCCTCCACCAGACCAAGCCGGAGCCGCTGGTGCACCGCGACCTGAAGCCGGCCAACATCCTGCTCGACCGCAACTACGTCAGCAAGATCAGCGACGTCGGGCTGGCGCGCCTCGTGCCGCCGGCGGTGGCGGACAGCGTGACGCAGTACCGGCTGACGGCGACGGCGGGGACCTTCTGCTACATCGACCCGGAGTACCAGCAGACGGGGAAGCTGGGCGTCAAGTCCGACATCTACTCCCTCGGCGTGCTGCTGCTGCAGGTGCTCACCGCGCGGCCGCCCATGGGCCTCACCCACCACGTCGAGAAGGCCATCGACGCCGGCACCTTCGCCCAGATGCTCGACGTCACCGTCAAGGACTGGCCCGTCGACGACGCCATCGGCTTCGCCAAGCTCGCCCTCAAGTGCACCGAAATGCGCCGGAGGGACCGCCCGGACCTCGCCACCGTCATCCTGCCGGAGCTCAACCGCCTCAGGAACCTCGGACACGCCTACGAGGCGCGCATGAGCGCCGCCGCCGCCGACGCCGCCGCGCACGCCCAGGACAACGTCGGCTCGCCGACGGTGGTGGGCGCGTCGTGGAGAACGGCGGAGAGCTAA
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| Protein seq | MQGGGPLSPDEHRATSPPGIMHHQPAMTIVVAVDRDRNSQLAVKWVVDHLLTGASNIILLHIAVHPPAANHGFAMAEATHGALEAEMREIFVPFRGFCTRNGVHVSELVLEEADVSKALIEFITVNKIQSIALGASNRNAFTKKFKNADVPSSLMKGAPDYCNIYVVAKGKSVNVRLAKCGVDGGCGGGGGYEGDSSIRSLYTRRCSRGKLPPATPSPDSSRRSVDSRTLPELTTRPPFRERSLPSSSSKPVVLSSRAAPDCGGGGVDGSYRSTRRSVSNESFVGDLDFGQSSRFSSMDFCDSLDMSSLSASPRESSSPLSAPQREVEVEMRRLRLELKQTMDMYNAACREAINAKQRTKELQLLKLEEARRLEEARHAEEAALAMAEMEKTKCRAAMEAAEAAQRLADLEAQRRRNAEVRARREADEKVRALDAISSHDFRYRRYNIDDIELATERFSDELKIGEGGYGPVYRASLDHTPVAIKVLRPDAQQGRKQFQQEVEVLSCIRHPNMVLLLGACPDYGCLVYEYMDNGSLEDRLFRRGGTPPIPWSQRFRISAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPAVADSVTQYRLTATAGTFCYIDPEYQQTGKLGVKSDIYSLGVLLLQVLTARPPMGLTHHVEKAIDAGTFAQMLDVTVKDWPVDDAIGFAKLALKCTEMRRRDRPDLATVILPELNRLRNLGHAYEARMSAAAADAAAHAQDNVGSPTVVGASWRTAES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0581400 | RBH | 0.259728 | 0.000000 | 41.099422 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g39970 | RBH | 0.174897 | 0.000000 | 10.534961 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0581400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0022900 | RBH | 0.0 | 0.0 | 13.611523 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022500 | RBH | 0.000000 | 0.0 | 31.008999 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0022830 | RBH | 0.0 | 0.0 | 46.750305 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028960 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0021950 | RBH | 0.000000 | 0.0 | 26.383673 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0377000 | RBH | 13.521719 | 2.0389015 | 3.6997935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0021900 | SBH | 2.067067 | 0.083541 | 15.664396 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0371700 | SBH | 9.6173325 | 56.601925 | 59.134802 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0021870 | RBH | 0.782381 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0021810 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022080 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022150 | RBH | 0.000000 | 0.0 | 4.596161 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0021930 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022240 | RBH | 0.000000 | 0.0 | 9.392284 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021930 | RBH | 0.0 | 0.0 | 76.316483 |
