Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0003200 | OGI:01008970 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:2641331-2644816 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcattaaacattccatgctgaattgaagttaactacattctgtttacatctttacagtggcatgcatctaagcttaatgaatattaactacgcaaccttgtgttcctccaattattcctggtacaatcatcaacactgtctacatatgtatcttgcccaacgtttagctcacagtgctatgttcttcatggccgaccatccaagacctgagatattcatctctggttgcatgcatctctgatacagcttctgccaacatcattcgctctctgggttgttgctttgagcatgatatgccgagcctaagaacagacaccaagcactgttgaataattcttgtttttatgctttcatttttaacatctgcaacattttcttcttcatgaagccagattgttggatcagctatgtctaGgggttggtgaagaaaagaagctgcaacaaacttgtgcagatccattgaatccctgaaaatgtcatcagtagggctccttccagtaaacatctcaagcaacaatatgcctaagctgtaagtatcgcctgctctggttattgtagacccttccccatactctgcaatgtttgcaatcaaagttagttgtcaaccgtaccctccacatgtaaaacaaatacaaagtgccccagtactccaatccacacccatgagggaggagggggagggattatgggaattaatgtaagaagttcagTtttttttttaaaaaaaaaaaatctacctggtgcaatataaccaatggaacctctgattccaattgagcttttcgaactttgaagagttttagtactacttttcgggaggattcttgatatgccaaaatctccaaccttagcactcttgtcttctgatagaagaatattactaggcttcagatcacagtgtatgattggtggctggcagtgattgtgaagataatccagtgcatcaaagatatcaacagcaatgttgagtctctgtgaaaggctgagtgtattgctaggagtgagattgcttgacttgggatgaatccaaccatccaagctaccattgggcatgaactcaaaaaccaatgccttgaactcttgaccctgtggaccaatacttgagcaacaagtgatgatctttatgagacaacggtggcgtactcttctcagagcctcacattcagcctcaaagctttttgaagatcctgattgttgaaggtcgaacacttttacagcaacaagtgcactctcatcgtctaaagtacatctaaaaacagaaccatatcttcctttgccaagcaggttggcttctgaaaattcattacttcctcttgataatgcataatatgaaaccctttgatactgttcctcaataaccagggatgttgcttgtctattttgtctttgtttgaacttcctttggtgtaacagaataactacaatagcagaaactaacaccaatattgcacccgttgttggcagagctattgcaagagacttcagatgctggtttctgttcttgcttacattgagaatgggacatggagccaagtgaagctggggtattccaccgcacaagttattccccacaaccgatgcaaaagtcaggtttctgaaaacacccttaactggaacttccccttgcaatttgttgaaggacacatctaattgccacagcgttgtcaaattttgtagagttgctgggattggtcctgaaaaattgttgtgtgctagaaacagctgttgcagattgggaatcctagcaatggtgtcGgggatcctgccagataacttattcatggttaggttcagtacggtgagCccttttaggttgctcaaagattgtggtattcctccttcaaatgagttctcttctagatagagggcttccatcacctcacaatttcctatactgtcaggtatttgtccagatagctggtttccggatagatccattccatttaggttaaccaagctaccaacttctgatggaaggggtcctgacagagaattatatgacaagtccaagaaccacgagagtgactgcagctcaaaaatatctttggggatcgaaccatttagatggttgtatgacaaatctagaacaaacagtttttttagatCcccaatgcttggtgggattggaccttccaaattgcagtagaatgcgtatatcctattcaaatttgtaagatttccaatagatgccggtatgaggcctgacaggctggtattgtacagggaaatttcgaccaagtttgttagctttccaatgctttcaggaatcactccagataatatggaattgaaccccagatcgagaaagcttaagcctaccagattgccaatgtcctcaggtatgctccccgagatattgttgttctctaaattgagcattcgtagcgtcgttgacaggttcccaattggccttggcagctgcccactgaaagagttgttagcgaggacaaatacttgcagctggctgcagtttgacagtgaagtgagaaattcccagcccttggtgttatctgcctcaagttgatttcctaccaaatacaaatgctgaagatattgcaacctccccaagttgggaggcacaaatccggtgaatttgttgtctgagaggtacagatccgtgagtgttgaaagattggagagagaaggagggatgactcctgtaaaccggttaacattcaatccaaacacttgtataccgggaagcatgcgaccaatgtcagaagggatgcttccatgcagcatgttattgccaacctggagcatcaccagcgacgacaaattgtacagagatatcggaagttcgccggaaaggttgtttgcattgagaaaaagataacgcagacctgcgatatcgccgaggcctggagggatgagaccctcaagcttgttgtaactcagagacaagagctgcaacgacgaaaggttggctagcgaggccgggatcttccctgttaagctgttcttcctgagctgaagcttctcgagccgtggcagcgtgttcccgagctccggagggattcgcccgccaagctgcgggttggactggatccgcaggattgtcaagctgatgcaggagctcagattagcagggatcgcacctgagaaggagttgtggtccatgtcgaggaccaggagacgccggagccggccgacggccggaggaatctcgccgtgcagctggttggagctcaggttgagccgccgtaggaaggtgaggttcccgacggccggcgggagcgtgccggtgaggttgctcgacggcaggtccagcgccgccaccctcgtcggccaccggcggctgcatgtcacgccctcccagccgcagaagctggcgctggtgttccatgaggcgagcgcacttgagatgctcccgctgagccctgccttgagagcaagcagcgccggctcatcgcttgccgtgccggtgccgatcgtcatcaggacgcagaggagggacaatgcaagcctcatccgacgtatcgccat
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| CDS seq | atggcgatacgtcggatgaggcttgcattgtccctcctctgcgtcctgatgacgatcggcaccggcacggcaagcgatgagccggcgctgcttgctctcaaggcagggctcagcgggagcatctcaagtgcgatccctgctaatctgagctcctgcatcagcttgacaatcctgcggatccagtccaacccgcagcttggcgggcgaatccctccggagctcgggaacacgctgccacggctcgagaagcttcagctcaggaagaacagcttaacagggaagatcccggcctcgctagccaacctttcgtcgttgcagctcttgtctctgagttacaacaagcttgagggtctcatccctccaggcctcggcgatatcgcaggtctgcgttatctttttctcaatgcaaacaacctttccggcgaacttccgatatctctgtacaatttgtcgtcgctggtgatgctccaggttggcaataacatgctgcatggaagcatcccttctgacattggtcgcatgcttcccggtatacaagtgtttggattgaatgttaaccggtttacaggagtcatccctccttctctctccaatctttcaacactcacggatctgtacctctcagacaacaaattcaccggatttgtgcctcccaacttggggaggttgcaatatcttcagcatttgtatttggtaggaaatcaacttgaggcagataacaccaagggctgggaatttctcacttcactgtcaaactgcagccagctgcaagtatttgtcctcgctaacaactctttcagtgggcagctgccaaggccaattgggaacctgtcaacgacgctacgaatgctcaatttagagaacaacaatatctcggggagcatacctgaggacattggcaatctggtaggcttaagctttctcgatctggggttcaattccatattatctggagtgattcctgaaagcattggaaagctaacaaacttggtcgaaatttccctgtacaataccagcctgtcaggcctcataccggcatctattggaaatcttacaaatttgaataggatatacgcattctactgcaatttggaaggtccaatcccaccaagcattgggGatctaaaaaaactgtttgttctagatttgtcatacaaccatctaaatggttcgatccccaaagatatttttgagctgcagtcactctcgtggttcttggacttgtcatataattctctgtcaggaccccttccatcagaagttggtagcttggttaacctaaatggaatggatctatccggaaaccagctatctggacaaatacctgacagtataggaaattgtgaggtgatggaagccctctatctagaagagaactcatttgaaggaggaataccacaatctttgagcaacctaaaaggGctcaccgtactgaacctaaccatgaataagttatctggcaggatcccCgacaccattgctaggattcccaatctgcaacagctgtttctagcacacaacaatttttcaggaccaatcccagcaactctacaaaatttgacaacgctgtggcaattagatgtgtccttcaacaaattgcaaggggaagttccagttaagggtgttttcagaaacctgacttttgcatcggttgtggggaataacttgtgcggtggaataccccagcttcacttggctccatgtcccattctcaatgtaagcaagaacagaaaccagcatctgaagtctcttgcaatagctctgccaacaacgggtgcaatattggtgttagtttctgctattgtagttattctgttacaccaaaggaagttcaaacaaagacaaaatagacaagcaacatccctggttattgaggaacagtatcaaagggtttcatattatgcattatcaagaggaagtaatgaattttcagaagccaacctgcttggcaaaggaagatatggttctgtttttagatgtactttagacgatgagagtgcacttgttgctgtaaaagtgttcgaccttcaacaatcaggatcttcaaaaagctttgaggctgaatgtgaggctctgagaagagtacgccaccgttgtctcataaagatcatcacttgttgctcaagtattggtccacagggtcaagagttcaaggcattggtttttgagttcatgcccaatggtagcttggatggttggattcatcccaagtcaagcaatctcactcctagcaatacactcagcctttcacagagactcaacattgctgttgatatctttgatgcactggattatcttcacaatcactgccagccaccaatcatacactgtgatctgaagcctagtaatattcttctatcagaagacaagagtgctaaggttggagattttggcatatcaagaatcctcccgaaaagtagtactaaaactcttcaaagttcgaaaagctcaattggaatcagaggttccattggttatattgcaccagagtatggggaagggtctacaataaccagagcaggcgatacttacagcttaggcatattgttgcttgagatgtttactggaaggagccctactgatgacattttcagggattcaatggatctgcacaagtttgttgcagcttcttttcttcaccaacccCtagacatagctgatccaacaatctggcttcatgaagaagaaaatgttgcagatgttaaaaatgaaagcataaaaacaagaattattcaacagtgcttggtgtctgttcttaggctcggcatatcatgctcaaagcaacaacccagagagcgaatgatgttggcagaagctgtatcagagatgcatgcaaccagagatgaatatctcaggtcttggatggtcggccatgaagaacatagcactgtgagctaa
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| Protein seq | MAIRRMRLALSLLCVLMTIGTGTASDEPALLALKAGLSGSISSAIPANLSSCISLTILRIQSNPQLGGRIPPELGNTLPRLEKLQLRKNSLTGKIPASLANLSSLQLLSLSYNKLEGLIPPGLGDIAGLRYLFLNANNLSGELPISLYNLSSLVMLQVGNNMLHGSIPSDIGRMLPGIQVFGLNVNRFTGVIPPSLSNLSTLTDLYLSDNKFTGFVPPNLGRLQYLQHLYLVGNQLEADNTKGWEFLTSLSNCSQLQVFVLANNSFSGQLPRPIGNLSTTLRMLNLENNNISGSIPEDIGNLVGLSFLDLGFNSILSGVIPESIGKLTNLVEISLYNTSLSGLIPASIGNLTNLNRIYAFYCNLEGPIPPSIGDLKKLFVLDLSYNHLNGSIPKDIFELQSLSWFLDLSYNSLSGPLPSEVGSLVNLNGMDLSGNQLSGQIPDSIGNCEVMEALYLEENSFEGGIPQSLSNLKGLTVLNLTMNKLSGRIPDTIARIPNLQQLFLAHNNFSGPIPATLQNLTTLWQLDVSFNKLQGEVPVKGVFRNLTFASVVGNNLCGGIPQLHLAPCPILNVSKNRNQHLKSLAIALPTTGAILVLVSAIVVILLHQRKFKQRQNRQATSLVIEEQYQRVSYYALSRGSNEFSEANLLGKGRYGSVFRCTLDDESALVAVKVFDLQQSGSSKSFEAECEALRRVRHRCLIKIITCCSSIGPQGQEFKALVFEFMPNGSLDGWIHPKSSNLTPSNTLSLSQRLNIAVDIFDALDYLHNHCQPPIIHCDLKPSNILLSEDKSAKVGDFGISRILPKSSTKTLQSSKSSIGIRGSIGYIAPEYGEGSTITRAGDTYSLGILLLEMFTGRSPTDDIFRDSMDLHKFVAASFLHQPLDIADPTIWLHEEENVADVKNESIKTRIIQQCLVSVLRLGISCSKQQPRERMMLAEAVSEMHATRDEYLRSWMVGHEEHSTVS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0003200 | OsLima_01g0003200.01 | Chr01 | 2641331 | 2644816 | - | NAM | ||
| CDS seq | atggcgatacgtcggatgaggcttgcattgtccctcctctgcgtcctgatgacgatcggcaccggcacggcaagcgatgagccggcgctgcttgctctcaaggcagggctcagcgggagcatctcaagtgcgatccctgctaatctgagctcctgcatcagcttgacaatcctgcggatccagtccaacccgcagcttggcgggcgaatccctccggagctcgggaacacgctgccacggctcgagaagcttcagctcaggaagaacagcttaacagggaagatcccggcctcgctagccaacctttcgtcgttgcagctcttgtctctgagttacaacaagcttgagggtctcatccctccaggcctcggcgatatcgcaggtctgcgttatctttttctcaatgcaaacaacctttccggcgaacttccgatatctctgtacaatttgtcgtcgctggtgatgctccaggttggcaataacatgctgcatggaagcatcccttctgacattggtcgcatgcttcccggtatacaagtgtttggattgaatgttaaccggtttacaggagtcatccctccttctctctccaatctttcaacactcacggatctgtacctctcagacaacaaattcaccggatttgtgcctcccaacttggggaggttgcaatatcttcagcatttgtatttggtaggaaatcaacttgaggcagataacaccaagggctgggaatttctcacttcactgtcaaactgcagccagctgcaagtatttgtcctcgctaacaactctttcagtgggcagctgccaaggccaattgggaacctgtcaacgacgctacgaatgctcaatttagagaacaacaatatctcggggagcatacctgaggacattggcaatctggtaggcttaagctttctcgatctggggttcaattccatattatctggagtgattcctgaaagcattggaaagctaacaaacttggtcgaaatttccctgtacaataccagcctgtcaggcctcataccggcatctattggaaatcttacaaatttgaataggatatacgcattctactgcaatttggaaggtccaatcccaccaagcattgggGatctaaaaaaactgtttgttctagatttgtcatacaaccatctaaatggttcgatccccaaagatatttttgagctgcagtcactctcgtggttcttggacttgtcatataattctctgtcaggaccccttccatcagaagttggtagcttggttaacctaaatggaatggatctatccggaaaccagctatctggacaaatacctgacagtataggaaattgtgaggtgatggaagccctctatctagaagagaactcatttgaaggaggaataccacaatctttgagcaacctaaaaggGctcaccgtactgaacctaaccatgaataagttatctggcaggatcccCgacaccattgctaggattcccaatctgcaacagctgtttctagcacacaacaatttttcaggaccaatcccagcaactctacaaaatttgacaacgctgtggcaattagatgtgtccttcaacaaattgcaaggggaagttccagttaagggtgttttcagaaacctgacttttgcatcggttgtggggaataacttgtgcggtggaataccccagcttcacttggctccatgtcccattctcaatgtaagcaagaacagaaaccagcatctgaagtctcttgcaatagctctgccaacaacgggtgcaatattggtgttagtttctgctattgtagttattctgttacaccaaaggaagttcaaacaaagacaaaatagacaagcaacatccctggttattgaggaacagtatcaaagggtttcatattatgcattatcaagaggaagtaatgaattttcagaagccaacctgcttggcaaaggaagatatggttctgtttttagatgtactttagacgatgagagtgcacttgttgctgtaaaagtgttcgaccttcaacaatcaggatcttcaaaaagctttgaggctgaatgtgaggctctgagaagagtacgccaccgttgtctcataaagatcatcacttgttgctcaagtattggtccacagggtcaagagttcaaggcattggtttttgagttcatgcccaatggtagcttggatggttggattcatcccaagtcaagcaatctcactcctagcaatacactcagcctttcacagagactcaacattgctgttgatatctttgatgcactggattatcttcacaatcactgccagccaccaatcatacactgtgatctgaagcctagtaatattcttctatcagaagacaagagtgctaaggttggagattttggcatatcaagaatcctcccgaaaagtagtactaaaactcttcaaagttcgaaaagctcaattggaatcagaggttccattggttatattgcaccagagtatggggaagggtctacaataaccagagcaggcgatacttacagcttaggcatattgttgcttgagatgtttactggaaggagccctactgatgacattttcagggattcaatggatctgcacaagtttgttgcagcttcttttcttcaccaacccCtagacatagctgatccaacaatctggcttcatgaagaagaaaatgttgcagatgttaaaaatgaaagcataaaaacaagaattattcaacagtgcttggtgtctgttcttaggctcggcatatcatgctcaaagcaacaacccagagagcgaatgatgttggcagaagctgtatcagagatgcatgcaaccagagatgaatatctcaggtcttggatggtcggccatgaagaacatagcactgtgagctaa
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| Protein seq | MAIRRMRLALSLLCVLMTIGTGTASDEPALLALKAGLSGSISSAIPANLSSCISLTILRIQSNPQLGGRIPPELGNTLPRLEKLQLRKNSLTGKIPASLANLSSLQLLSLSYNKLEGLIPPGLGDIAGLRYLFLNANNLSGELPISLYNLSSLVMLQVGNNMLHGSIPSDIGRMLPGIQVFGLNVNRFTGVIPPSLSNLSTLTDLYLSDNKFTGFVPPNLGRLQYLQHLYLVGNQLEADNTKGWEFLTSLSNCSQLQVFVLANNSFSGQLPRPIGNLSTTLRMLNLENNNISGSIPEDIGNLVGLSFLDLGFNSILSGVIPESIGKLTNLVEISLYNTSLSGLIPASIGNLTNLNRIYAFYCNLEGPIPPSIGDLKKLFVLDLSYNHLNGSIPKDIFELQSLSWFLDLSYNSLSGPLPSEVGSLVNLNGMDLSGNQLSGQIPDSIGNCEVMEALYLEENSFEGGIPQSLSNLKGLTVLNLTMNKLSGRIPDTIARIPNLQQLFLAHNNFSGPIPATLQNLTTLWQLDVSFNKLQGEVPVKGVFRNLTFASVVGNNLCGGIPQLHLAPCPILNVSKNRNQHLKSLAIALPTTGAILVLVSAIVVILLHQRKFKQRQNRQATSLVIEEQYQRVSYYALSRGSNEFSEANLLGKGRYGSVFRCTLDDESALVAVKVFDLQQSGSSKSFEAECEALRRVRHRCLIKIITCCSSIGPQGQEFKALVFEFMPNGSLDGWIHPKSSNLTPSNTLSLSQRLNIAVDIFDALDYLHNHCQPPIIHCDLKPSNILLSEDKSAKVGDFGISRILPKSSTKTLQSSKSSIGIRGSIGYIAPEYGEGSTITRAGDTYSLGILLLEMFTGRSPTDDIFRDSMDLHKFVAASFLHQPLDIADPTIWLHEEENVADVKNESIKTRIIQQCLVSVLRLGISCSKQQPRERMMLAEAVSEMHATRDEYLRSWMVGHEEHSTVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.027065 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0152687 | SBH | 0.108840 | 0.000000 | 0.734873 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05640 | SBH | 0.175032 | 0.058426 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152687 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003890 | RBH | 0.074925 | 0.288941 | 0.370606 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003590 | SBH | 0.000000 | 0.161752 | 0.352982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003880 | SBH | 0.157822 | 0.000000 | 0.613723 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003250 | SBH | 0.020671 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003460 | RBH | 0.590100 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0046200 | SBH | 0.2952325 | 1.259976 | 1.5072685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003380 | SBH | 0.021284 | 0.000000 | 0.236726 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0047600 | SBH | 0.343202 | 1.435931 | 0.8211205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003490 | RBH | 0.031351 | 0.016273 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003620 | RBH | 0.032768 | 0.332644 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003450 | RBH | 1.382471 | 1.834372 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003490 | SBH | 0.054086 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003670 | SBH | 0.013014 | 0.152850 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003530 | SBH | 0.055597 | 0.0 | 0.249013 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003380 | SBH | 0.241341 | 1.364261 | 0.710795 |
