Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0152687 | OGI:01008970 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:2835281-2836233 | ||||||||
| Gene Symbol | RLCK24, OsRLCK24, - | ||||||||||
| DNA seq | AGCTTCGTACCATGCATTATCAAGAGGAAGTAATGAATTCTCAGAGGCTAACCTGCTTGGCAAAGGAAGATTATGGTTCTGTTAATAGATGTGCTTTAGAAGATGAGGGTGCAAGTGTAACCACGGCTGTGAAAATGTTCAACCTTCAAATGTCAGGATCTTCAAGGAGCTTTGAGGCTGAATGTGAGGCTTTGAGAAGAGTACGCCATCGTTGTCTCATAAAGATCATCACTTGTTGTTCGAGTATTGACCAACAGGGTCAAGAGTTCAAGGCACTGGTGTTTGAGTTCATGCCCAATGGTAGCTTGGATGGCTGAAATCATCCCAAGTCAAGCAATCTCACTAGCAATACACTCAGCCTTCCGCAGAGACTCAGCATTGCTGTTGATATCTTGGATGCACTGGATTATCTTCACAACCACTGTCAGCCACCAATCGTCCATTGTGACCTGAAACCAAGTAATATTCTTCTTGCAGAAGACAAGAGTGCAAAAGTTGGAGATTTAGGTATATCAAAAATCCTCCCAAACAGCACAACTAAAACTCTTCAAAATTCAAAAAGCTCAATTGGAATCAGAGGCTCCATTGGCTATATTGCACCAGGTAGTTAAAAGTTTTATTTTTGTATTTATTCCCACAAGTCCTCCCACCTCCTCCCTCATGGGTGGGGTCGGATTGTGCACTTTGTATATCTTACATGCTAATGGTACAGTTAGAAACTAATTTTGACTGCATATCTTGTAGAATATGGGGAGGGTTCTGCAGTAACCAGAGCGGGTGATACTTACAGTTTAGGAATATTGTTGCTCGAGATGTTCACCGGAAGAAGCCCTATGATGACATTTTCAGGGATTCAATGGATTTGCACAAGTTTATTGCAGCTTCTTTTCTTGATAGAGCCTTAGACAGCTGATCAGACAATCTGGCTGCATGAAGAAGCAAATGAGACAGAT
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| CDS seq | ATGCATTATCAAGAGGAAGTAATGAATTCTCAGAGGCTAACCTGCTTGGCAAAGGAAGATTATGGTTCTGTTAATAGATGTGCTTTAGAAGATGAGGGTGCAAGTGTAACCACGGCTGTGAAAATGTTCAACCTTCAAATGTCAGGATCTTCAAGGAGCTTTGAGGCTGAATGTGAGGCTTTGAGAAGAGTACGCCATCGTTGTCTCATAAAGATCATCACTTGTTGTTCGAGTATTGACCAACAGGGTCAAGAGTTCAAGGCACTGGTGTTTGAGTTCATGCCCAATGGTAGCTTGGATGGCTGA |
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| Protein seq | MHYQEEVMNSQRLTCLAKEDYGSVNRCALEDEGASVTTAVKMFNLQMSGSSRSFEAECEALRRVRHRCLIKIITCCSSIDQQGQEFKALVFEFMPNGSLDG |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0152687 | OsNip_01t0152687-00 | Chr01 | 2835281 | 2836233 | + | RAP2018-11-26 | ||
| CDS seq | ATGCATTATCAAGAGGAAGTAATGAATTCTCAGAGGCTAACCTGCTTGGCAAAGGAAGATTATGGTTCTGTTAATAGATGTGCTTTAGAAGATGAGGGTGCAAGTGTAACCACGGCTGTGAAAATGTTCAACCTTCAAATGTCAGGATCTTCAAGGAGCTTTGAGGCTGAATGTGAGGCTTTGAGAAGAGTACGCCATCGTTGTCTCATAAAGATCATCACTTGTTGTTCGAGTATTGACCAACAGGGTCAAGAGTTCAAGGCACTGGTGTTTGAGTTCATGCCCAATGGTAGCTTGGATGGCTGA
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| Protein seq | MHYQEEVMNSQRLTCLAKEDYGSVNRCALEDEGASVTTAVKMFNLQMSGSSRSFEAECEALRRVRHRCLIKIITCCSSIDQQGQEFKALVFEFMPNGSLDG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.108840 | 0.000000 | 0.734873 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05940 | RBH | 0.209138 | 0.208471 | 0.124440 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0152687 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003890 | RBH | 0.074925 | 0.288941 | 0.370606 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003590 | SBH | 0.000000 | 0.161752 | 0.352982 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003880 | SBH | 0.157822 | 0.000000 | 0.613723 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003470 | RBH | 0.035706 | 0.015925 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003660 | RBH | 1.253610 | 2.609523 | 3.362861 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0046200 | SBH | 0.2952325 | 1.259976 | 1.5072685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003640 | RBH | 0.000000 | 0.061787 | 0.371750 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0047600 | SBH | 0.343202 | 1.435931 | 0.8211205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003490 | RBH | 0.031351 | 0.016273 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003620 | SBH | 0.032768 | 0.332644 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003760 | RBH | 0.332478 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003690 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003670 | SBH | 0.013014 | 0.152850 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003730 | RBH | 0.104070 | 0.425282 | 0.397443 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003580 | RBH | 0.122708 | 2.686569 | 0.302200 |
