Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0002440 | OGI:01006620 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:1885339-1886666 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtatattgctcgtctgctagcaatcttactcttggtacttgatacaagtttcatcgttttgatcatttcaccccagacagtcatactagctgtgttaacaaggttccaaccgatgtgtagtatgtccatagtaaacagaaggttgaaccatgactgaactggtggtggccatggtttcaactcagccattgttagaatcactgttccaattacctgaactcccatatcgaaaggctcccatgccaaggttacccgagttagtggtggccatggtagcatgaaatgcactcttgcccaatagagtttgaattttggaccagccataggcagcgaatcccatcctctaatcactccatcacggctggttggaggtggccatggcttcaattcaattccctccaaccttagcttctcattgagtagtgtcccaaataacaacacatatatagctgcttgacttctgtatgtttctagagaaggaggtgaccatggattaatatgaagatcatacatagtcatcaatgccttgttctcatgcagagtgcttttcatcgaacacatggtgggtctcggtctgtcctgcttagggctagcgattgacctcggcaagaagatatccattggctcgacagatattagaacgaccttgggtatacacttcatggtcgggaacacgaccacaacttgttccatgccatcattgacgtcgaggccgactgtcgaacacttcgcagacgtgacattggaaaggtccttgatgacaatgtagggggtttggtccttgtccccaccgtcactaagatgcaaggacactgctagagtaggctcgttgtcgaggtggcctgagctcgctgtcacatccgggctgctagcataggggcattctgtcgagcagttggtaggcagtgagggagatggtgccatgggtggtgaagatgatgcagccatgatgaccgtagtggtcgctttgatgctggtactgagctcctccatgatgcccttcttctctgcatggattccctttccttcttctccatctcattgaacttctccaaaatccgatcaatcttctcattttgcctacgcctagcctccattaactcaagcttctccatgatctgatccagagcgtcatccaaggatttttcgtgtatcctcgaatcatcctcggacacttcatgttggcttggcattccatcgaacagctggtgtgcgttagtgccatgagcaccatccttgtccaaatctgacagcgaattgcatgggacatcactgcagatctttcccacactagaaaccccacgaatcgatagctctgataccat
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| CDS seq | atggtatcagagctatcgattcgtggggtttctagtgtgggaaagatctgcagtgatgtcccatgcaattcgctgtcagatttggacaaggatggtgctcatggcactaacgcacaccagctgttcgatggaatgccaagccaacatgaagtgtccgaggatgattcgaggatacacgaaaaatccttggatgacgctctggatcagatcatggagaagcttgagttaatggaggctaggcagaagaagggcatcatggaggagctcagtaccagcatcaaagcgaccactacggtcatcatggctgcatcatcttcaccacccatggcaccatctccctcactgcctaccaactgctcgacagaatgcccctatgctagcagcccggatgtgacagcgagctcaggccacctcgacaacgagcctactctagcagtgtccttgcatcttagtgacggtggggacaaggaccaaaccccctacattgtcatcaaggacctttccaatgtcacgtctgcgaagtgttcgacagtcggcctcgacgtcaatgatggcatggaacaagttgtggtcgtgttcccgaccatgaagtgtatacccaaggtcgttctaatatctgtcgagccaatggatatcttcttgccgaggtcaatcgctagccctaagcaggacagaccgagacccaccatgtgttcgatgaaaagcactctgcatgagaacaaggcattgatgactatgtatgatcttcatattaatccatggtcacctccttctctagaaacatacagaagtcaagcagctatatatgtgttgttatttgggacactactcaatgagaagctaaggttggagggaattgaattgaagccatggccacctccaaccagccgtgatggagtgattagaggatgggattcgctgcctatggctggtccaaaattcaaactctattgggcaagagtgcatttcatgctaccatggccaccactaactcgggtaaccttggcatgggagcctttcgatatgggagttcaggtaattggaacagtgattctaacaatggctgagttgaaaccatggccaccaccagttcagtcatggttcaaccttctgtttactatggacatactacacatcggttggaaccttgttaacacagctagtatgactgtctggggtgaaatgatcaaaacgatgaaacttgtatcaagtaccaagagtaagattgctagcagacgagcaatatactga
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| Protein seq | MVSELSIRGVSSVGKICSDVPCNSLSDLDKDGAHGTNAHQLFDGMPSQHEVSEDDSRIHEKSLDDALDQIMEKLELMEARQKKGIMEELSTSIKATTTVIMAASSSPPMAPSPSLPTNCSTECPYASSPDVTASSGHLDNEPTLAVSLHLSDGGDKDQTPYIVIKDLSNVTSAKCSTVGLDVNDGMEQVVVVFPTMKCIPKVVLISVEPMDIFLPRSIASPKQDRPRPTMCSMKSTLHENKALMTMYDLHINPWSPPSLETYRSQAAIYVLLFGTLLNEKLRLEGIELKPWPPPTSRDGVIRGWDSLPMAGPKFKLYWARVHFMLPWPPLTRVTLAWEPFDMGVQVIGTVILTMAELKPWPPPVQSWFNLLFTMDILHIGWNLVNTASMTVWGEMIKTMKLVSSTKSKIASRRAIY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0002440 | OsLima_01g0002440.01 | Chr01 | 1885339 | 1886666 | - | NAM | ||
| CDS seq | atggtatcagagctatcgattcgtggggtttctagtgtgggaaagatctgcagtgatgtcccatgcaattcgctgtcagatttggacaaggatggtgctcatggcactaacgcacaccagctgttcgatggaatgccaagccaacatgaagtgtccgaggatgattcgaggatacacgaaaaatccttggatgacgctctggatcagatcatggagaagcttgagttaatggaggctaggcagaagaagggcatcatggaggagctcagtaccagcatcaaagcgaccactacggtcatcatggctgcatcatcttcaccacccatggcaccatctccctcactgcctaccaactgctcgacagaatgcccctatgctagcagcccggatgtgacagcgagctcaggccacctcgacaacgagcctactctagcagtgtccttgcatcttagtgacggtggggacaaggaccaaaccccctacattgtcatcaaggacctttccaatgtcacgtctgcgaagtgttcgacagtcggcctcgacgtcaatgatggcatggaacaagttgtggtcgtgttcccgaccatgaagtgtatacccaaggtcgttctaatatctgtcgagccaatggatatcttcttgccgaggtcaatcgctagccctaagcaggacagaccgagacccaccatgtgttcgatgaaaagcactctgcatgagaacaaggcattgatgactatgtatgatcttcatattaatccatggtcacctccttctctagaaacatacagaagtcaagcagctatatatgtgttgttatttgggacactactcaatgagaagctaaggttggagggaattgaattgaagccatggccacctccaaccagccgtgatggagtgattagaggatgggattcgctgcctatggctggtccaaaattcaaactctattgggcaagagtgcatttcatgctaccatggccaccactaactcgggtaaccttggcatgggagcctttcgatatgggagttcaggtaattggaacagtgattctaacaatggctgagttgaaaccatggccaccaccagttcagtcatggttcaaccttctgtttactatggacatactacacatcggttggaaccttgttaacacagctagtatgactgtctggggtgaaatgatcaaaacgatgaaacttgtatcaagtaccaagagtaagattgctagcagacgagcaatatactga
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| Protein seq | MVSELSIRGVSSVGKICSDVPCNSLSDLDKDGAHGTNAHQLFDGMPSQHEVSEDDSRIHEKSLDDALDQIMEKLELMEARQKKGIMEELSTSIKATTTVIMAASSSPPMAPSPSLPTNCSTECPYASSPDVTASSGHLDNEPTLAVSLHLSDGGDKDQTPYIVIKDLSNVTSAKCSTVGLDVNDGMEQVVVVFPTMKCIPKVVLISVEPMDIFLPRSIASPKQDRPRPTMCSMKSTLHENKALMTMYDLHINPWSPPSLETYRSQAAIYVLLFGTLLNEKLRLEGIELKPWPPPTSRDGVIRGWDSLPMAGPKFKLYWARVHFMLPWPPLTRVTLAWEPFDMGVQVIGTVILTMAELKPWPPPVQSWFNLLFTMDILHIGWNLVNTASMTVWGEMIKTMKLVSSTKSKIASRRAIY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04250 | SBH | 0.055200 | 0.0 | 0.051186 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002420 | SBH | 0.000000 | 0.0 | 0.236469 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002550 | RBH | 0.000000 | 0.000000 | 0.598763 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002490 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002340 | SBH | 0.0 | 0.024589 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002620 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0034100 | RBH | 0.4666395 | 1.7175915 | 0.5397375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0034000 | RBH | 0.466091 | 1.637512 | 3.5093985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002600 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002470 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002640 | RBH | 0.000000 | 0.238537 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002550 | RBH | 0.084869 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002480 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0024520 | SBH | 0.172748 | 4.325004 | 0.285309 |
