Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0002340 | OGI:01006150 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:1839521-1842091 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCAAGCCAACATAAGGTGTTCAAGGATGATGAAAGGATAGCAGAGCCCGTTCCCATCAAGTCCACCATGAACAAGGAGGGAATATCCATGGACGAAGCTTTAGATCGGATTCTTGAGAGGTTTGAGTTGATGGAGGCCAACCGTAGACAAGAGGAGAAGTTCAATCAAATACTATAGAAGTTGGAGGAGGTAGAGGCTCGTAGGAGCAAGGCTGCCGAGGAGACAATTGCAGCCATCAGGGCAACCACCGCTGTCCTCAAGGCTAAATCACCTACAGCACCCATGGCACCACCTACTCCAGCGCCTACCAAGTGTTTGACTGAATGCCCCAACAACAACCTCACTTGGGCGACGGCGAGTTCAAGTCACATTACTGAGGATACTGCTCCAACAGCTGCCTGGGAGCTAGGAAACAACAAGCACAAGGGCCACGCCTCATGCGTCGTCACCAAGGACTCACCCGAGGTCACACCCACCATGTGTTCAACGAAATGCTCCGGTCCTACCGTCGAGCCTGATCTCACTGTGGCTGCAGTGGTTACGTCCGCCACCACTGTCGTGGCCTCTATGGAGTTGGTAGCTGCTGGGAACGCAATCGGTGCCACTTACATCAACAATCTTGACCACCCCAAGGTGACGCATGCTAAGTGTTCGATGTCTGGCTCCGGCGTCAAACGGGGCACTGAACAAGTTGTGCTTGCATTCCCACTCATGGCTAGCCCTGTGGAGTTCACGACATCATTGGTGGAACCATCTCCACCCACGGGGCTGAAGCTTGGTGCTGCCATCTGCGTGGGAGATCAGGTGCCTATGAAGTGTTCGATGAAATGTACTGAGAGTGACAACAAGCCACTGATGGAACACCCCAAGAGAAACCCATGGCCACCTGCTTGGTTAGGATGGAAGAAGTGGTATGTGTCCTGGACTGTAGTCAATTATTCTGATATGAGATTTTATTTCATTCCACCGTGGCCACCGCCACTTAAAGTAGGTTGGCTTGCATTGGTATTTTCTAAATTTGGAGCAGCTCATACTGACATGATGGATATAATGTTGCATTGGACTGATATGAAACCATGGCCTCCACCAAATCAAAATTTGAGAAGTATCATGGTGCATCTATTTGCTTGGAAGCATTGGAAAGTTAGTGTAGAAGTGAGTCTCTTTGCTTGGAACACTAAACAATACATGAATAGTGTGCTACTTATTACAGTTGGCACCAAATGGTTGATTCACTCTGCAGTCAAGGACTGTTTTCTCCAAGGCAAGCCATTCAAACTTGTGGACCCATTGGAACTCATGCAAGTAATTTTTGTGCTATTAGTGCGGGATCCAGATGTTGAGATGTTTCAGATTGGCAGCTACTCTCTACAACCAGAAAATTATCAATTAACTAACTACTTGGTGGCAAGACTATTGAAGCAAGGTAATCTGAAAAAGGTACTCGATGGTGTGGATCATAGCAAAAACATTAAGAAGAGTGATGTTGATGTTGGCGAGGACAATCCTGGTAATATTAGTACTGCAGCAAAAATGTTCATTGATGGTCTTGGTATCAAGGAAGATTCAGACATGCTATGTCCATCAGCCCAGTACATTGATAATTGGTCTACTAAGCTGCTGGATGAGATAAGAAACGGGTGCAATATATATCTGTTAGTAGCACTAATAGATGATGAGCTTAATCCATGGTGTTTCCTCATAGATAAGATATGGTATGATATTTTGGTGCTTCTATTTTTTACTGGGGCTACATGGAAGGTTGAAAGCTATGCACTTCCAATTAAAGATGTTATCCATATGGTTGTTTATTTTGTGCAACCTTTGCAAGGTATTCTGCTCCAAACAAGGCAAGGAAAAATAGAGAATCCTGTCATTTTGGACATAACTTCAGCAACTCAAACTGTCAAGTTTTTGCTCTGTTACAAGTCAACTATTAAGATCTACCCAAGTTGTTCTTCCATGGTACAAATTTCTGCCAGTAAATTCAGAGCTTGTGGGAAGGAGAACATATGCTACATGCTTCTATTGCTTGTATTGAATATTGGTGACTGCACTTTTCTGAGGTCCACTTCCTATATGCTACATGCTTCTATTGCTTGTGCTGAATATTGGTGCCTGCACTTCTCTGAGGTTGTCCAACATGCAATTTGTATTGGATGGATTATCAATTGGGCTATTCTTTTTTGGATGGAGCAAGCTGTATGTTCACCAAGGATTATTTTGCAAATGCCATGGGATCCAGGTGGTGGTAAACTTTTCATAGCTTCAGGCTGCCGGCTTGGGGACAAGCCGGATTCAAAGGAAGGGGTATTGTTAGGAATTGGGCCGGCTGCACTACGACCCAACACAGTGAGTAGCCCAATCCTTGGCCCAAGCAAGCCCAACAGAGAGCTAGAAAGGAAGGGATGCTGCACTCTCAGGAAAAGGAATAGAACAGAGATCAAACATGCATCGGCGGCTTCGGCCACGACGGCGGCGGCGGCGACTTGGTTCAGGCTGAACCTTGTCGATCTTCCTCTCTTCCTCTACTACCTCTCTTGCTACTATCTCTACTGCAGCTACTAG
More
|
||||||||||
| CDS seq | ATGCCAAGCCAACATAAGGTGTTCAAGGATGATGAAAGGATAGCAGAGCCCGTTCCCATCAAGTCCACCATGAACAAGGAGGGAATATCCATGGACGAAGCTTTAGATCGGATTCTTGAGAGGTTTGAGTTGATGGAGGCCAACCAGGCTCGTAGGAGCAAGGCTGCCGAGGAGACAATTGCAGCCATCAGGGCAACCACCGCTGTCCTCAAGGCTAAATCACCTACAGCACCCATGGCACCACCTACTCCAGCGCCTACCAAGTGTTTGACTGAATGCCCCAACAACAACCTCACTTGGGCGACGGCGAGTTCAAGTCACATTACTGAGGATACTGCTCCAACAGCTGCCTGGGAGCTAGGAAACAACAAGCACAAGGGCCACGCCTCATGCGTCGTCACCAAGGACTCACCCGAGGTCACACCCACCATGTGTTCAACGAAATGCTCCGGTCCTACCGTCGAGCCTGATCTCACTGTGGCTGCAGTGGTTACGTCCGCCACCACTGTCGTGGCCTCTATGGAGTTGGTAGCTGCTGGGAACGCAATCGGTGCCACTTACATCAACAATCTTGACCACCCCAAGGTGACGCATGCTAAGTGTTCGATGTCTGGCTCCGGCGTCAAACGGGGCACTGAACAAGTTGTGCTTGCATTCCCACTCATGGCTAGCCCTGTGGAGTTCACGACATCATTGGTGGAACCATCTCCACCCACGGGGCTGAAGCTTGGTGCTGCCATCTGCGTGGGAGATCAGGTGCCTATGAAGTGTTCGATGAAATGTACTGAGAGTGACAACAAGCCACTGATGGAACACCCCAAGAGAAACCCATGGCCACCTGCTTGGTTAGGATGGAAGAAGTGGTATGTGTCCTGGACTGTAGTCAATTATTCTGATATGAGATTTTATTTCATTCCACCGTGGCCACCGCCACTTAAAGTAGGTTGGCTTGCATTGGTATTTTCTAAATTTGGAGCAGCTCATACTGACATGATGGATATAATGTTGCATTGGACTGATATGAAACCATGGCCTCCACCAAATCAAAATTTGAGAAGTATCATGGTGCATCTATTTGCTTGGAAGCATTGGAAAGTTAGTGTAGAAGTGAGTCTCTTTGCTTGGAACACTAAACAATACATGAATAGTGTGCTACTTATTACAGTTGGCACCAAATGGTTGATTCACTCTGCAGTCAAGGACTGTTTTCTCCAAGGCAAGCCATTCAAACTTGTGGACCCATTGGAACTCATGCAAGTAATTTTTGTGCTATTAGTGCGGGATCCAGATGTTGAGATGTTTCAGATTGGCAGCTACTCTCTACAACCAGAAAATTATCAATTAACTAACTACTTGGTGGCAAGACTATTGAAGCAAGGTAATCTGAAAAAGGTACTCGATGGTGTGGATCATAGCAAAAACATTAAGAAGAGTGATGTTGATGTTGGCGAGGACAATCCTGGTAATATTAGTACTGCAGCAAAAATGTTCATTGATGGTCTTGGTATCAAGGAAGATTCAGACATGCTATGTCCATCAGCCCAGTACATTGATAATTGGTCTACTAAGCTGCTGGATGAGATAAGAAACGGGTGCAATATATATCTGTTAGTAGCACTAATAGATGATGAGCTTAATCCATGGTGTTTCCTCATAGATAAGATATGGTATGATATTTTGGTGCTTCTATTTTTTACTGGGGCTACATGGAAGGTTGAAAGCTATGCACTTCCAATTAAAGATGTTATCCATATGGTTGTTTATTTTGTGCAACCTTTGCAAGGTATTCTGCTCCAAACAAGGCAAGGAAAAATAGAGAATCCTGTCATTTTGGACATAACTTCAGCAACTCAAACTGTCAAGTTTTTGCTCTGTTACAAGTCAACTATTAAGATCTACCCAAGTTGTTCTTCCATGGTACAAATTTCTGCCAGTAAATTCAGAGCTTGTGGGAAGGAGAACATATGCTACATGCTTCTATTGCTTGTATTGAATATTGGTGACTGCACTTTTCTGAGGAAAAGGAATAGAACAGAGATCAAACATGCATCGGCGGCTTCGGCCACGACGGCGGCGGCGGCGACTTGGTTCAGGCTGAACCTTGTCGATCTTCCTCTCTTCCTCTACTACCTCTCTTGCTACTATCTCTACTGCAGCTACTAG
More
|
||||||||||
| Protein seq | MPSQHKVFKDDERIAEPVPIKSTMNKEGISMDEALDRILERFELMEANQARRSKAAEETIAAIRATTAVLKAKSPTAPMAPPTPAPTKCLTECPNNNLTWATASSSHITEDTAPTAAWELGNNKHKGHASCVVTKDSPEVTPTMCSTKCSGPTVEPDLTVAAVVTSATTVVASMELVAAGNAIGATYINNLDHPKVTHAKCSMSGSGVKRGTEQVVLAFPLMASPVEFTTSLVEPSPPTGLKLGAAICVGDQVPMKCSMKCTESDNKPLMEHPKRNPWPPAWLGWKKWYVSWTVVNYSDMRFYFIPPWPPPLKVGWLALVFSKFGAAHTDMMDIMLHWTDMKPWPPPNQNLRSIMVHLFAWKHWKVSVEVSLFAWNTKQYMNSVLLITVGTKWLIHSAVKDCFLQGKPFKLVDPLELMQVIFVLLVRDPDVEMFQIGSYSLQPENYQLTNYLVARLLKQGNLKKVLDGVDHSKNIKKSDVDVGEDNPGNISTAAKMFIDGLGIKEDSDMLCPSAQYIDNWSTKLLDEIRNGCNIYLLVALIDDELNPWCFLIDKIWYDILVLLFFTGATWKVESYALPIKDVIHMVVYFVQPLQGILLQTRQGKIENPVILDITSATQTVKFLLCYKSTIKIYPSCSSMVQISASKFRACGKENICYMLLLLVLNIGDCTFLRKRNRTEIKHASAASATTAAAATWFRLNLVDLPLFLYYLSCYYLYCSY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0002340 | OsARC_01g0002340.01 | Chr01 | 1839521 | 1842091 | + | NAM | ||
| CDS seq | ATGCCAAGCCAACATAAGGTGTTCAAGGATGATGAAAGGATAGCAGAGCCCGTTCCCATCAAGTCCACCATGAACAAGGAGGGAATATCCATGGACGAAGCTTTAGATCGGATTCTTGAGAGGTTTGAGTTGATGGAGGCCAACCAGGCTCGTAGGAGCAAGGCTGCCGAGGAGACAATTGCAGCCATCAGGGCAACCACCGCTGTCCTCAAGGCTAAATCACCTACAGCACCCATGGCACCACCTACTCCAGCGCCTACCAAGTGTTTGACTGAATGCCCCAACAACAACCTCACTTGGGCGACGGCGAGTTCAAGTCACATTACTGAGGATACTGCTCCAACAGCTGCCTGGGAGCTAGGAAACAACAAGCACAAGGGCCACGCCTCATGCGTCGTCACCAAGGACTCACCCGAGGTCACACCCACCATGTGTTCAACGAAATGCTCCGGTCCTACCGTCGAGCCTGATCTCACTGTGGCTGCAGTGGTTACGTCCGCCACCACTGTCGTGGCCTCTATGGAGTTGGTAGCTGCTGGGAACGCAATCGGTGCCACTTACATCAACAATCTTGACCACCCCAAGGTGACGCATGCTAAGTGTTCGATGTCTGGCTCCGGCGTCAAACGGGGCACTGAACAAGTTGTGCTTGCATTCCCACTCATGGCTAGCCCTGTGGAGTTCACGACATCATTGGTGGAACCATCTCCACCCACGGGGCTGAAGCTTGGTGCTGCCATCTGCGTGGGAGATCAGGTGCCTATGAAGTGTTCGATGAAATGTACTGAGAGTGACAACAAGCCACTGATGGAACACCCCAAGAGAAACCCATGGCCACCTGCTTGGTTAGGATGGAAGAAGTGGTATGTGTCCTGGACTGTAGTCAATTATTCTGATATGAGATTTTATTTCATTCCACCGTGGCCACCGCCACTTAAAGTAGGTTGGCTTGCATTGGTATTTTCTAAATTTGGAGCAGCTCATACTGACATGATGGATATAATGTTGCATTGGACTGATATGAAACCATGGCCTCCACCAAATCAAAATTTGAGAAGTATCATGGTGCATCTATTTGCTTGGAAGCATTGGAAAGTTAGTGTAGAAGTGAGTCTCTTTGCTTGGAACACTAAACAATACATGAATAGTGTGCTACTTATTACAGTTGGCACCAAATGGTTGATTCACTCTGCAGTCAAGGACTGTTTTCTCCAAGGCAAGCCATTCAAACTTGTGGACCCATTGGAACTCATGCAAGTAATTTTTGTGCTATTAGTGCGGGATCCAGATGTTGAGATGTTTCAGATTGGCAGCTACTCTCTACAACCAGAAAATTATCAATTAACTAACTACTTGGTGGCAAGACTATTGAAGCAAGGTAATCTGAAAAAGGTACTCGATGGTGTGGATCATAGCAAAAACATTAAGAAGAGTGATGTTGATGTTGGCGAGGACAATCCTGGTAATATTAGTACTGCAGCAAAAATGTTCATTGATGGTCTTGGTATCAAGGAAGATTCAGACATGCTATGTCCATCAGCCCAGTACATTGATAATTGGTCTACTAAGCTGCTGGATGAGATAAGAAACGGGTGCAATATATATCTGTTAGTAGCACTAATAGATGATGAGCTTAATCCATGGTGTTTCCTCATAGATAAGATATGGTATGATATTTTGGTGCTTCTATTTTTTACTGGGGCTACATGGAAGGTTGAAAGCTATGCACTTCCAATTAAAGATGTTATCCATATGGTTGTTTATTTTGTGCAACCTTTGCAAGGTATTCTGCTCCAAACAAGGCAAGGAAAAATAGAGAATCCTGTCATTTTGGACATAACTTCAGCAACTCAAACTGTCAAGTTTTTGCTCTGTTACAAGTCAACTATTAAGATCTACCCAAGTTGTTCTTCCATGGTACAAATTTCTGCCAGTAAATTCAGAGCTTGTGGGAAGGAGAACATATGCTACATGCTTCTATTGCTTGTATTGAATATTGGTGACTGCACTTTTCTGAGGAAAAGGAATAGAACAGAGATCAAACATGCATCGGCGGCTTCGGCCACGACGGCGGCGGCGGCGACTTGGTTCAGGCTGAACCTTGTCGATCTTCCTCTCTTCCTCTACTACCTCTCTTGCTACTATCTCTACTGCAGCTACTAG
More
|
|||||||
| Protein seq | MPSQHKVFKDDERIAEPVPIKSTMNKEGISMDEALDRILERFELMEANQARRSKAAEETIAAIRATTAVLKAKSPTAPMAPPTPAPTKCLTECPNNNLTWATASSSHITEDTAPTAAWELGNNKHKGHASCVVTKDSPEVTPTMCSTKCSGPTVEPDLTVAAVVTSATTVVASMELVAAGNAIGATYINNLDHPKVTHAKCSMSGSGVKRGTEQVVLAFPLMASPVEFTTSLVEPSPPTGLKLGAAICVGDQVPMKCSMKCTESDNKPLMEHPKRNPWPPAWLGWKKWYVSWTVVNYSDMRFYFIPPWPPPLKVGWLALVFSKFGAAHTDMMDIMLHWTDMKPWPPPNQNLRSIMVHLFAWKHWKVSVEVSLFAWNTKQYMNSVLLITVGTKWLIHSAVKDCFLQGKPFKLVDPLELMQVIFVLLVRDPDVEMFQIGSYSLQPENYQLTNYLVARLLKQGNLKKVLDGVDHSKNIKKSDVDVGEDNPGNISTAAKMFIDGLGIKEDSDMLCPSAQYIDNWSTKLLDEIRNGCNIYLLVALIDDELNPWCFLIDKIWYDILVLLFFTGATWKVESYALPIKDVIHMVVYFVQPLQGILLQTRQGKIENPVILDITSATQTVKFLLCYKSTIKIYPSCSSMVQISASKFRACGKENICYMLLLLVLNIGDCTFLRKRNRTEIKHASAASATTAAAATWFRLNLVDLPLFLYYLSCYYLYCSY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.024589 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0134200 | RBH | 0.081681 | 0.0 | 0.441859 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04250 | RBH | 0.055200 | 0.0 | 0.051186 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0134200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002420 | RBH | 0.000000 | 0.0 | 0.236469 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002320 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002490 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002330 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0030400 | RBH | 0.437168 | 1.1168045 | 0.3406365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002380 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0031600 | RBH | 0.0983385 | 0.0708625 | 0.220605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002160 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002320 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002470 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002330 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002480 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002360 | RBH | 0.0 | 0.0 | 0.0 |
