Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0024520 | OGI:06075460 | 2/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:27612025-27614766 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaacccaaatcaccaaataacaataacttcaccaatgaacacaaatccaaccaacagtgatgttttgaaggtggaagatgaggtaatacaaggggctagaagactctagaagctaggggaatgggaggtggaggaggggataagtactcgacgaggatccaagcccggacccaagccgccgccgccgccgccgatcgcctagccgaggctagtcgccgtcctgtgccgtcttctctttcctccccccttccaacgatgatgctgctgcatttgttgatctccatttgggctggcttgggccaatgttgtgtttgtgagagccggcccattgtgtggcccacctgagttcctaacaatcccctttccttgaaattcggcttgtccccaagccgatgacatacacctcctggtcctggatcccatggtacatgcaacatttgttgtgtgataaaatgaaacgttgcttgcctgatagctccccatattccatctaacaatgccagaagcttgaaaaagtctgagcatctcttgtccatgataagatcccatccacccttctcagtattttgtccaactatacatgatgttaactgaggttcagttagctgaagcaaagagttctttttcccaacaacttgagcatgtgtatgcaattcaactgagaaatccaattctttgacatatgaaaccctgatctgctccaaaccagtacttgaaataacccaaatattcaggatgctactggaatgagcacaataggagcagacaagtgaaccatcaccaagctcccaaaatatccgcacttcccattcagtaaaaagcactgtagatggactccttttcacaccaaaatttagcccatctaaggaaatcagcaactcagcatcaagtatatgtctcaaatttccttgcataattaatagtaccatcatgcatattgttgaacgacaaattgttggccatggatagcagtttctcttctgaaccatatcagcacaggatagccacaaggaagatgattcaggaccacagaagactaatttatctttcttgctaacagctgctaagaaacatacatgcaaagcaatagcttcaggcatttcaacatcaccgaacaactcagtatattgctcttgtctgctagcaatcttactcttggtacttgatacaagtttcatcgttttgatcatttcaccccagacagtcatactagctgtgttaacaaggttccaaccgatgtgtagtatgtccatagtaaacagaaggttgaaccatgactgaactggtggtggccatggtttcaactcagccattgttagaatcactgttccaattacctgaactcccatatcgaaaggctcccatgccaaggaacttacccgagttagtggtggccatggtagcatgaaatgcactcttgcccaatagagtttgaattttggaccagccataggcagcgaatcccatcctctaatcactccatcacagctggttggaggtggccatggctgcaattcaattccctccaaccttagcttctcattgagtagtgtcccaaataacaacacatatatagctgcttgacttctgtatgtttctagagaaggaggtgaccatggattaatatgaagatcatacatagtcatcaatgccttgttctcatgcagagtgcttttcatcgaacacatggtgggtctcggtctgtcctgcttagggctagcgattgacctcggcaagaagatatccattggctcgacagatattagaacgaccttgggtatacacttcatggtcgggaacacgaccgcaacttgttccatgccatcattgacgtcgaggccgactgtcgaacacttcgcagacgtgacattgaagaggtccttgatgacaatgtagggggtttggtccttgtccccaccgtcactaagatgcaaggacactgctagagtaggctcgttgtcgaggtggcctgagctcgctgtcacattcgggctgctagcataggggcattctgtcgagcagttggtaggcagtgagggagatggtgccatgggtggtgaagatgatgcagccatgatgaccgtagtggtcgctttgatgctggtactgagctcctccatgatgtcccttcttctctgcatggattccctttccttcttctccatctcattgaacttctccaaaatccgatcaatcttctcattttgcctacgcctagcctccattaactcaagcttctccatgatctgatccagagcgtcatccaaggatttttggtgtatcctcgaatcatcctcggacacttcatgttggcttggcattccatcgaacagctggtgtgcgttagtgccatgagcaccatccttgtccaaatctgacagcgaattgcatgggacatcactgcagatctttcccacactagaaaccccacgaatcgatagctctgataccatattgttaggaacccaaatcaccaaataacaataacttcaccaatgaacacaaatccaaccaacagtgatgttttgaaggtggaagatgaggtaatacaaggggctagaagactctagaagctaggggaatgggaggtggaggaggggataagtactcgacgaggatccaagcccggacccaagccgccgccgccgccgccgatcgcctagccgaggctagtcgccgtcctgtgccgtcttctcctcttcctCcccccttccaacgatgatgctgctgcatttgttgat
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| CDS seq | atggtatcagagctatcgattcgtggggtttctagtgtgggaaagatctgcagtgatgtcccatgcaattcgctgtcagatttggacaaggatggtgctcatggcactaacgcacaccagctgttcgatggaatgccaagccaacatgaagtgtccgaggatgattcgaggatacaccaaaaatccttggatgacgctctggatcagatcatggagaagcttgagttaatggaggctaggcgtaggcaaaatgagaagattgatcggattttggagaagttcaatgagatggagaagaaggaaagggaatccatgcagagaagaagggacatcatggaggagctcagtaccagcatcaaagcgaccactacggtcatcatggctgcatcatcttcaccacccatggcaccatctccctcactgcctaccaactgctcgacagaatgcccctatgctagcagcccgaatgtgacagcgagctcaggccacctcgacaacgagcctactctagcagtgtccttgcatcttagtgacggtggggacaaggaccaaaccccctacattgtcatcaaggacctcttcaatgtcacgtctgcgaagtgttcgacagtcggcctcgacgtcaatgatggcatggaacaagttgcggtcgtgttcccgaccatgaagtgtatacccaaggtcgttctaatatctgtcgagccaatggatatcttcttgccgaggtcaatcgctagccctaagcaggacagaccgagacccaccatgtgttcgatgaaaagcactctgcatgagaacaaggcattgatgactatccatggccacctccaaccagctgtgatggagtga
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| Protein seq | MVSELSIRGVSSVGKICSDVPCNSLSDLDKDGAHGTNAHQLFDGMPSQHEVSEDDSRIHQKSLDDALDQIMEKLELMEARRRQNEKIDRILEKFNEMEKKERESMQRRRDIMEELSTSIKATTTVIMAASSSPPMAPSPSLPTNCSTECPYASSPNVTASSGHLDNEPTLAVSLHLSDGGDKDQTPYIVIKDLFNVTSAKCSTVGLDVNDGMEQVAVVFPTMKCIPKVVLISVEPMDIFLPRSIASPKQDRPRPTMCSMKSTLHENKALMTIHGHLQPAVME |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0024520 | OsNaBo_06g0024520.01 | Chr06 | 27613500 | 27614697 | - | NAM | ||
| CDS seq | atggtatcagagctatcgattcgtggggtttctagtgtgggaaagatctgcagtgatgtcccatgcaattcgctgtcagatttggacaaggatggtgctcatggcactaacgcacaccagctgttcgatggaatgccaagccaacatgaagtgtccgaggatgattcgaggatacaccaaaaatccttggatgacgctctggatcagatcatggagaagcttgagttaatggaggctaggcgtaggcaaaatgagaagattgatcggattttggagaagttcaatgagatggagaagaaggaaagggaatccatgcagagaagaagggacatcatggaggagctcagtaccagcatcaaagcgaccactacggtcatcatggctgcatcatcttcaccacccatggcaccatctccctcactgcctaccaactgctcgacagaatgcccctatgctagcagcccgaatgtgacagcgagctcaggccacctcgacaacgagcctactctagcagtgtccttgcatcttagtgacggtggggacaaggaccaaaccccctacattgtcatcaaggacctcttcaatgtcacgtctgcgaagtgttcgacagtcggcctcgacgtcaatgatggcatggaacaagttgcggtcgtgttcccgaccatgaagtgtatacccaaggtcgttctaatatctgtcgagccaatggatatcttcttgccgaggtcaatcgctagccctaagcaggacagaccgagacccaccatgtgttcgatgaaaagcactctgcatgagaacaaggcattgatgactatccatggccacctccaaccagctgtgatggagtga
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| Protein seq | MVSELSIRGVSSVGKICSDVPCNSLSDLDKDGAHGTNAHQLFDGMPSQHEVSEDDSRIHQKSLDDALDQIMEKLELMEARRRQNEKIDRILEKFNEMEKKERESMQRRRDIMEELSTSIKATTTVIMAASSSPPMAPSPSLPTNCSTECPYASSPNVTASSGHLDNEPTLAVSLHLSDGGDKDQTPYIVIKDLFNVTSAKCSTVGLDVNDGMEQVAVVFPTMKCIPKVVLISVEPMDIFLPRSIASPKQDRPRPTMCSMKSTLHENKALMTIHGHLQPAVME
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0024520 | OsNaBo_06g0024520.02 | Chr06 | 27612025 | 27614766 | - | IsoSeq | ||
| CDS seq | atgggatcttatcatggacaagagatgctcagactttttcaagcttctggcattgttagatggaatatggggagctatcaggcaagcaacgtttcattttatcacacaacaaatgttgcatgtaccatgggatccaggaccaggaggtgtatgtcatcggcttggggacaagccgaatttcaaggaaaggggattgttaggaactcaggtgggccacacaatgggccggctctcacaaacacaacattggcccaagccagcccaaatggagatcaacaaatgcagcagcatcatcgttggaaggggggaggaaagagaagacggcacaggacggcgactagcctc
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| Protein seq | MGSYHGQEMLRLFQASGIVRWNMGSYQASNVSFYHTTNVACTMGSRTRRCMSSAWGQAEFQGKGIVRNSGGPHNGPALTNTTLAQASPNGDQQMQQHHRWKGGGKRRRHRTATSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.172748 | 4.325004 | 0.285309 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37790 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012250 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011840 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012140 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012190 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012030 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011490 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012050 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011740 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012110 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011780 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G024370 | RBH | 0.057705 | 0.656889 | 0.392671 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
