Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0002370 | OGI:01002250 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:1838669-1840694 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcataccaagttgctcctgttgccaatcttggcctctttgcagctactaccaggcgctgccaatggcgccaccgtggacccaagctgcccaccggcgacatgcgggaacctgaccatcacctacccattctggctgggcagccaggaccagtcgtcttgcggcccaccgtcgttccggctcacgtgcaatgacagagcatcaggtccctttctaagaaactcctacatcaaggtcctcggcttcgattatggccgccgctccctcgtggccgtgcacgccctcctcgctgccgatgctgcgtgcaccgtcatgttcaacgtgtcctctgctttcgcgatcactgacaggttcagtatcagccagagcaaccgggagctctatgtgctgtccaggtgcagagagagactgccaccgccagacgctgtcccggtgaccaactgcagagccaacagtagtggcatgtacgcctaccttgggggaagctatggcacaggccagacaccggtgaacaatggtggttgcgagctttcagtgttcctggtgcttgggtccagcaacgacgccgacatgacagccgcaaattacagacagcttatagcgggcgggtttctgttggagtgggaacctgttggtgactgcaacgcctgcacagcgagcggcgggaggtgccggtacgatgccagcacatcggcgttcgcgtgcctttgcgcagatggtggaatgaggccatcgatttgcggtgagctaagcatgcagaaatgatagtcttgtgaagctgcatatattcagatttctctttttctttcagaactaactagtgacatactgacatatgttgtgtgtgtgtgtgtgtgttAtaatctttttgtcatgcagatggtaagaacaggggcaagttagctttgataggtaaacattctgcttcatttgtaacctggttaaattgtagaacagaatgcattaaccagaagtttaaattgctcacctgtacctcttctttactttcagtatctctgtctgctgcggctggcttggttttcgcctttcttgcttggctgatgtaccatcagaggcaaaagttcagatcagcaatctgcggagtttactctggcaatacgaaaaatgaagaagaaatgttgaaaaaatgtgaatctcttgctctcaaaaggtacaagtactcagagctgaagaaaataactaaatcatttgaagataatttaggggaaggtggctatggcgtagtattcaagggaagactacaaaatggcagaatggttgcagtgaagatcttgacagtatcaaaaggcaatggagaggatttcctaaatgaagttatgagcatcagtcggacatctcatgttaacattgtcactctactcggtttttgtttagagggaccaaagcgagcacttgtctacgagtacatgcctaatggttctttgaagaattacattcattcagaaagttcaaatctagctacaggatgggagatgctgctaaaaattgcgatcggcatcgcacgaggactggagtatctgcaccagggctgcaacatccgcatcatccatttcgatatcaagCctcgcaatatccttcttgatcatgagttttgtccaaaaattgcagattttggattagccaagctatgccacctcaacgagagcatcctttcgatggcggaagcgagaggaaccattggttttattgctccagaagtattctccagaggattcggagtcgtgtcaaccaaatcagatgtctatagctatgggatgctgcttttggaaatagtcaaagtaagaaaaaacataaaagtaatcgcagataatttcagtgaaacatttttcccacattgggtttatgaccatctggtgagtgagatgcaacgttgtgaaacggcatatggaaccgaagagattgcaagaaaaatgaccatagttggattgtggtgcatacaaatgacacctgaaactcgtccttcgatgagcagggtcatagagatgttggaaaggagtatcagtga
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| CDS seq | atgcataccaagttgctcctgttgccaatcttggcctctttgcagctactaccaggcgctgccaatggcgccaccgtggacccaagctgcccaccggcgacatgcgggaacctgaccatcacctacccattctggctgggcagccaggaccagtcgtcttgcggcccaccgtcgttccggctcacgtgcaatgacagagcatcaggtccctttctaagaaactcctacatcaaggtcctcggcttcgattatggccgccgctccctcgtggccgtgcacgccctcctcgctgccgatgctgcgtgcaccgtcatgttcaacgtgtcctctgctttcgcgatcactgacaggttcagtatcagccagagcaaccgggagctctatgtgctgtccaggtgcagagagagactgccaccgccagacgctgtcccggtgaccaactgcagagccaacagtagtggcatgtacgcctaccttgggggaagctatggcacaggccagacaccggtgaacaatggtggttgcgagctttcagtgttcctggtgcttgggtccagcaacgacgccgacatgacagccgcaaattacagacagcttatagcgggcgggtttctgttggagtgggaacctgttggtgactgcaacgcctgcacagcgagcggcgggaggtgccggtacgatgccagcacatcggcgttcgcgtgcctttgcgcagatggtggaatgaggccatcgatttgcgatggtaagaacaggggcaagttagctttgatagtatctctgtctgctgcggctggcttggttttcgcctttcttgcttggctgatgtaccatcagaggcaaaagttcagatcagcaatctgcggagtttactctggcaatacgaaaaatgaagaagaaatgttgaaaaaatgtgaatctcttgctctcaaaaggtacaagtactcagagctgaagaaaataactaaatcatttgaagataatttaggggaaggtggctatggcgtagtattcaagggaagactacaaaatggcagaatggttgcagtgaagatcttgacagtatcaaaaggcaatggagaggatttcctaaatgaagttatgagcatcagtcggacatctcatgttaacattgtcactctactcggtttttgtttagagggaccaaagcgagcacttgtctacgagtacatgcctaatggttctttgaagaattacattcattcagaaagttcaaatctagctacaggatgggagatgctgctaaaaattgcgatcggcatcgcacgaggactggagtatctgcaccagggctgcaacatccgcatcatccatttcgatatcaagCctcgcaatatccttcttgatcatgagttttgtccaaaaattgcagattttggattagccaagctatgccacctcaacgagagcatcctttcgatggcggaagcgagaggaaccattggttttattgctccagaagtattctccagaggattcggagtcgtgtcaaccaaatcagatgtctatagctatgggatgctgcttttggaaatagtcaaagtaagaaaaaacataaaagtaatcgcagataatttcagtgaaacatttttcccacattgggtttatgaccatctgggtcatagagatgttggaaaggagtatcagtga
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| Protein seq | MHTKLLLLPILASLQLLPGAANGATVDPSCPPATCGNLTITYPFWLGSQDQSSCGPPSFRLTCNDRASGPFLRNSYIKVLGFDYGRRSLVAVHALLAADAACTVMFNVSSAFAITDRFSISQSNRELYVLSRCRERLPPPDAVPVTNCRANSSGMYAYLGGSYGTGQTPVNNGGCELSVFLVLGSSNDADMTAANYRQLIAGGFLLEWEPVGDCNACTASGGRCRYDASTSAFACLCADGGMRPSICDGKNRGKLALIVSLSAAAGLVFAFLAWLMYHQRQKFRSAICGVYSGNTKNEEEMLKKCESLALKRYKYSELKKITKSFEDNLGEGGYGVVFKGRLQNGRMVAVKILTVSKGNGEDFLNEVMSISRTSHVNIVTLLGFCLEGPKRALVYEYMPNGSLKNYIHSESSNLATGWEMLLKIAIGIARGLEYLHQGCNIRIIHFDIKPRNILLDHEFCPKIADFGLAKLCHLNESILSMAEARGTIGFIAPEVFSRGFGVVSTKSDVYSYGMLLLEIVKVRKNIKVIADNFSETFFPHWVYDHLGHRDVGKEYQ |
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| Function | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 [UniProtKB/Swiss-Prot:F4HQ20] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0002370 | OsLima_01g0002370.01 | Chr01 | 1838669 | 1840694 | + | NAM | ||
| CDS seq | atgcataccaagttgctcctgttgccaatcttggcctctttgcagctactaccaggcgctgccaatggcgccaccgtggacccaagctgcccaccggcgacatgcgggaacctgaccatcacctacccattctggctgggcagccaggaccagtcgtcttgcggcccaccgtcgttccggctcacgtgcaatgacagagcatcaggtccctttctaagaaactcctacatcaaggtcctcggcttcgattatggccgccgctccctcgtggccgtgcacgccctcctcgctgccgatgctgcgtgcaccgtcatgttcaacgtgtcctctgctttcgcgatcactgacaggttcagtatcagccagagcaaccgggagctctatgtgctgtccaggtgcagagagagactgccaccgccagacgctgtcccggtgaccaactgcagagccaacagtagtggcatgtacgcctaccttgggggaagctatggcacaggccagacaccggtgaacaatggtggttgcgagctttcagtgttcctggtgcttgggtccagcaacgacgccgacatgacagccgcaaattacagacagcttatagcgggcgggtttctgttggagtgggaacctgttggtgactgcaacgcctgcacagcgagcggcgggaggtgccggtacgatgccagcacatcggcgttcgcgtgcctttgcgcagatggtggaatgaggccatcgatttgcgatggtaagaacaggggcaagttagctttgatagtatctctgtctgctgcggctggcttggttttcgcctttcttgcttggctgatgtaccatcagaggcaaaagttcagatcagcaatctgcggagtttactctggcaatacgaaaaatgaagaagaaatgttgaaaaaatgtgaatctcttgctctcaaaaggtacaagtactcagagctgaagaaaataactaaatcatttgaagataatttaggggaaggtggctatggcgtagtattcaagggaagactacaaaatggcagaatggttgcagtgaagatcttgacagtatcaaaaggcaatggagaggatttcctaaatgaagttatgagcatcagtcggacatctcatgttaacattgtcactctactcggtttttgtttagagggaccaaagcgagcacttgtctacgagtacatgcctaatggttctttgaagaattacattcattcagaaagttcaaatctagctacaggatgggagatgctgctaaaaattgcgatcggcatcgcacgaggactggagtatctgcaccagggctgcaacatccgcatcatccatttcgatatcaagCctcgcaatatccttcttgatcatgagttttgtccaaaaattgcagattttggattagccaagctatgccacctcaacgagagcatcctttcgatggcggaagcgagaggaaccattggttttattgctccagaagtattctccagaggattcggagtcgtgtcaaccaaatcagatgtctatagctatgggatgctgcttttggaaatagtcaaagtaagaaaaaacataaaagtaatcgcagataatttcagtgaaacatttttcccacattgggtttatgaccatctgggtcatagagatgttggaaaggagtatcagtga
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| Protein seq | MHTKLLLLPILASLQLLPGAANGATVDPSCPPATCGNLTITYPFWLGSQDQSSCGPPSFRLTCNDRASGPFLRNSYIKVLGFDYGRRSLVAVHALLAADAACTVMFNVSSAFAITDRFSISQSNRELYVLSRCRERLPPPDAVPVTNCRANSSGMYAYLGGSYGTGQTPVNNGGCELSVFLVLGSSNDADMTAANYRQLIAGGFLLEWEPVGDCNACTASGGRCRYDASTSAFACLCADGGMRPSICDGKNRGKLALIVSLSAAAGLVFAFLAWLMYHQRQKFRSAICGVYSGNTKNEEEMLKKCESLALKRYKYSELKKITKSFEDNLGEGGYGVVFKGRLQNGRMVAVKILTVSKGNGEDFLNEVMSISRTSHVNIVTLLGFCLEGPKRALVYEYMPNGSLKNYIHSESSNLATGWEMLLKIAIGIARGLEYLHQGCNIRIIHFDIKPRNILLDHEFCPKIADFGLAKLCHLNESILSMAEARGTIGFIAPEVFSRGFGVVSTKSDVYSYGMLLLEIVKVRKNIKVIADNFSETFFPHWVYDHLGHRDVGKEYQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.049578 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0136900 | RBH | 0.281009 | 0.158969 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04460 | RBH | 0.947109 | 0.310669 | 0.081273 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0136900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002590 | RBH | 0.146139 | 0.000000 | 0.280715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002480 | RBH | 0.000000 | 0.000000 | 0.315367 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002650 | RBH | 1.453925 | 0.0 | 1.284384 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002480 | RBH | 0.008902 | 0.005864 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002550 | RBH | 0.595844 | 3.099725 | 1.351150 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0033300 | RBH | 0.3599865 | 0.7996085 | 1.4546695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002530 | RBH | 0.091198 | 0.084866 | 0.065209 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002470 | SBH | 0.0 | 0.108457 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002560 | RBH | 0.075790 | 0.585201 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002630 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002590 | RBH | 0.000000 | 0.000000 | 0.017706 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002480 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002700 | RBH | 0.364793 | 0.274939 | 0.455609 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002580 | RBH | 0.259614 | 0.0 | 0.677685 |
