Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0001640 | OGI:01004680 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:1234220-1235007 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaggacagattgatatacaagctaagcgatccacgtacaaataataagcactaaactgacaactaaagcagagctctaaatgttgattgctaagctagctagtagcatgatcaaactaacgatcagctagcagctagcgcttattatcgacggacagatcgatcgatcgatcacacccgtagccgtaggttaattacttgtgttcgtcgggtgtgcaactgggacctggctcgcctctgaaccaatcatggcagacgtagcgaggaggctccgacgacgacgacgacgactccagctgctggcaatccttgcacgcggcggcgcacgactccacctcgtcggcgcaccggcagatcggcgggagagacctgctgcagatgtccatgtcgcagcaatctccccacggcctcggcgtgcagaaggggcccgggtcggcgccccagtagacgtcgccgcagatgagccggcccggcgacgcctcctggtcctggcacacctcgcactgggcggcgcactggctgggctccagctcgtcgttgcaccgccagaacggcgggaagatgctcgccggctgctcctcgatgtcgtcgcagcacttccacggcctcttctccgtcggcatcttcggcgactttgctccgtcgctggggaggcgtatggtattggtgtcgtcgttcgccgtgccgtgggcggcgacggcgacggtgaggccgccgaggaggaagaagaaaaggatggaagaagtagccatattgccgctattcatcttctcgtcgatgcgtgggtt
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| CDS seq | atgaatagcggcaatatggctacttcttccatccttttcttcttcctcctcggcggcctcaccgtcgccgtcgccgcccacggcacggcgaacgacgacaccaataccatacgcctccccagcgacggagcaaagtcgccgaagatgccgacggagaagaggccgtggaagtgctgcgacgacatcgaggagcagccggcgagcatcttcccgccgttctggcggtgcaacgacgagctggagcccagccagtgcgccgcccagtgcgaggtgtgccaggaccaggaggcgtcgccgggccggctcatctgcggcgacgtctactggggcgccgacccgggccccttctgcacgccgaggccgtggggagattgctgcgacatggacatctgcagcaggtctctcccgccgatctgccggtgcgccgacgaggtggagtcgtgcgccgccgcgtgcaaggattgccagcagctggagtcgtcgtcgtcgtcgtcggagcctcctcgctacgtctgccatgattggttcagaggcgagccaggtcccagttgcacacccgacgaacacaagtaa
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| Protein seq | MNSGNMATSSILFFFLLGGLTVAVAAHGTANDDTNTIRLPSDGAKSPKMPTEKRPWKCCDDIEEQPASIFPPFWRCNDELEPSQCAAQCEVCQDQEASPGRLICGDVYWGADPGPFCTPRPWGDCCDMDICSRSLPPICRCADEVESCAAACKDCQQLESSSSSSEPPRYVCHDWFRGEPGPSCTPDEHK |
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| Function | Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:Q0JR25] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0001640 | OsLima_01g0001640.01 | Chr01 | 1234220 | 1235007 | - | NAM | ||
| CDS seq | atgaatagcggcaatatggctacttcttccatccttttcttcttcctcctcggcggcctcaccgtcgccgtcgccgcccacggcacggcgaacgacgacaccaataccatacgcctccccagcgacggagcaaagtcgccgaagatgccgacggagaagaggccgtggaagtgctgcgacgacatcgaggagcagccggcgagcatcttcccgccgttctggcggtgcaacgacgagctggagcccagccagtgcgccgcccagtgcgaggtgtgccaggaccaggaggcgtcgccgggccggctcatctgcggcgacgtctactggggcgccgacccgggccccttctgcacgccgaggccgtggggagattgctgcgacatggacatctgcagcaggtctctcccgccgatctgccggtgcgccgacgaggtggagtcgtgcgccgccgcgtgcaaggattgccagcagctggagtcgtcgtcgtcgtcgtcggagcctcctcgctacgtctgccatgattggttcagaggcgagccaggtcccagttgcacacccgacgaacacaagtaa
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| Protein seq | MNSGNMATSSILFFFLLGGLTVAVAAHGTANDDTNTIRLPSDGAKSPKMPTEKRPWKCCDDIEEQPASIFPPFWRCNDELEPSQCAAQCEVCQDQEASPGRLICGDVYWGADPGPFCTPRPWGDCCDMDICSRSLPPICRCADEVESCAAACKDCQQLESSSSSSEPPRYVCHDWFRGEPGPSCTPDEHK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0124600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03380 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0124600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001820 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001700 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001820 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001820 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022300 | RBH | 27.8467865 | 69.9584235 | 304.7526475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001750 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0022500 | SBH | 61.9955875 | 122.357986 | 0.8228405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001800 | RBH | 0.000000 | 83.186020 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001810 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001720 | SBH | 1.239976 | 13.206697 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001910 | SBH | 1.592188 | 5.267444 | 17.152979 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001780 | SBH | 0.559114 | 83.650063 | 74.767174 |
