Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLaMu_01g0001720		OGI:01004680 \| 16/16			LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)			Chr01:1309010-1311717		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RBBI2-3, RBBI2-3
DNA seq		ttatttgtgctcgtcgggtgtgcaactgggacctggctcgcctctgaaccaatcatggcagacgtagcgaggaggctccgacgacgacgacgacgacgactccaccggctggcaatccttgcacgcggcggcgcacgactccacctcgtcagcgcaccggcagatcggcgggagagacctgctgcagatggccatgtcgcagcaatctccccacggcctcggcgtgcagaaggggcccgggtcggcgccccagtagacgtcgccgcagatgagccggcccagcgacgcctcctggtcctgacacaccccgcactgggcggtgcactggctgggctccagctcgtcgttgcaccgccagaacggcgggaagatcctcgccggctgctcctcgatgtcgtcgcagcacttccacggcctcttctccgtcggcatcttcggcgactttgctccgtcgctggggaggcgtatggtgttggtgtcgtcgtccgccgtgccgtgggtggcaacggcgacggtgaggccgccgaggaggaggaagagaaggatggaagaagtagccatattgccgctattcatcttctcgtcgatgcgtgggttaattggtgttggggatgtgctgcattatttatggaccaaaaagtatgctaaagctaataacacaatcacaaagctgacttatcatttacaaaagacgattagctagcctacttgAaaaaaaattcacgaacgcataaaagaattgcatgtcaatatattttagaagaaaagagttttagttacacaatgcaatcagccagaccggcttctaccaatggaagggagaaaaagtaaaataaaaaagctgaaggttagaaaacaacaacgtgagactgaagagaaggggccgagccacgctacacttccaacaaatcccaaaaacgacaacgctagctaaataccatagatggccctccgagtggataaactctagaaccactgagacttaagaaagcgcagagtcgaaaaacatacttgaaaaataaattataacaaaatttggctgaattcaaacatatttcaccaaaattaaaacttgtcctagataatacaaatgagaattgccaaaataatttgaaaataaacaacaataaaaattgaagaaattttatagaattaaaaaaaataaaataaaaggaaattaaagcatgaacaaatatttgcatcgggacaaatttggttaatacggcccatgcaagcaacgagctttaaagtccatgagaaactaaacttcccagaataagtttactttagtcctctcaagtcgtcgccgagttctctcgacaacaaagttagggacttcatgtgaacttcttctaaacttccctgaactggcccacacaccttgcccagttgccctcggcccatctcaaatttgatcgctaattgtgagtttgtgaccttcgtttcggttgggttgactgatgcgcctctggttttgacctttctggcttggacggaggtgccgtttatctctaccaatctactatcatacgtagtattatgttctagatgaactccaccggtcaaattaaggggttttttaagataatgagggattttattagtcaataaaaacacccggactctgtcctgactagggatacatgcaaccaaaaaaatacaggatagatggggattaatttgtgaaacgatctggtgaaaaaatggtttttctttcactgtttatcaagcttcaattctacatttattgttcataatattgattgatgcgcgtgaaacatgaacaagcttccgcatgcttttatactgagtagctagagatcgctcattattcaacttattatttacgatgacagcgcaacatggcatcatttattcatttattttgctcttggtcactggctagaccatcgttcacacgagacaacacacaaattaaacacgtaattaagataagcgagttgcagcacaagcactctcaagctatagcagagctctgaatatggagctagctagcaacactgaatgatcgaacgaacgatcagctagctgctagctagggcgagttttattgacggacacagatcgatcgatcgatcatatatatatcgatctgcagctagttctccgtgcacgagtgtttgcacttgggccctggctggccggtgaactggtcctggcagacgtagcgaggaggcttcgacgacttcacccgcttgcaatccttgcacgcggcggcgcacttcttcaccttgtcgttgcagcggcagatcggcgggatcgacctggtgcaggtggtgttggtgcagcaatctccccacggccgcggcgtgcagaagggacccgggtcggcgccccagtagacgtcgctgcagatgagcgggcccgggaatggccccggcgcctcctggcacacctcgcactgtgccacgcacttgctgggctccagctcgtcgttgcagcgccactgcggcgggttggtcttcgtcggcagccgctcgatgttgtcgcagcacttccacggcttcttcttcgtcggcgcctgctgtgctgatcctccgtcggtcgggaggcgtatggtgttggtggtggtgtcgtcgtccgccgtgccgagggcggcggcggtgaggccggcgaggaggaggaagagaagggtggaagtagtcatggcggtcttcatcttcttcgagtagtagcttagttggtct More
CDS seq		atgaagaccgccatgactacttccacccttctcttcctcctcctcgccggcctcaccgccgccgccctcggcacggcggacgacgacaccaccaccaacaccatacgcctcccgaccgacggaggatcagcacagcaggcgccgacgaagaagaagccgtggaagtgctgcgacaacatcgagcggctgccgacgaagaccaacccgccgcagtggcgctgcaacgacgagctggagcccagcaagtgcgtggcacagtgcgaggtgtgccaggaggcgccggggccattcccgggcccgctcatctgcagcgacgtctactggggcgccgacccgggtcccttctgcacgccgcggccgtggggagattgctgcaccaacaccacctgcaccaggtcgatcccgccgatctgccgctgcaacgacaaggtgaagaagtgcgccgccgcgtgcaaggattgcaagcgggtgaagtcgtcgaagcctcctcgctacgtctgccaggaccagttcaccggccagccagggcccaagtgcaaacactccggcaatatggctacttcttccatccttctcttcctcctcctcggcggcctcaccgtcgccgttgccacccacggcacggcggacgacgacaccaacaccatacgcctccccagcgacggagcaaagtcgccgaagatgccgacggagaagaggccgtggaagtgctgcgacgacatcgaggagcagccggcgaggatcttcccgccgttctggcggtgcaacgacgagctggagcccagccagtgcaccgcccagtgcggggtgtgtcaggaccaggaggcgtcgctgggccggctcatctgcggcgacgtctactggggcgccgacccgggccccttctgcacgccgaggccgtggggagattgctgcgacatggccatctgcagcaggtctctcccgccgatctgccggtgcgctgacgaggtggagtcgtgcgccgccgcgtgcaaggattgccagccggtggagtcgtcgtcgtcgtcgtcgtcggagcctcctcgctacgtctgccatgattggttcagaggcgagccaggtcccagttgcacacccgacgagcacaaataa More
Protein seq		MKTAMTTSTLLFLLLAGLTAAALGTADDDTTTNTIRLPTDGGSAQQAPTKKKPWKCCDNIERLPTKTNPPQWRCNDELEPSKCVAQCEVCQEAPGPFPGPLICSDVYWGADPGPFCTPRPWGDCCTNTTCTRSIPPICRCNDKVKKCAAACKDCKRVKSSKPPRYVCQDQFTGQPGPKCKHSGNMATSSILLFLLLGGLTVAVATHGTADDDTNTIRLPSDGAKSPKMPTEKRPWKCCDDIEEQPARIFPPFWRCNDELEPSQCTAQCGVCQDQEASLGRLICGDVYWGADPGPFCTPRPWGDCCDMAICSRSLPPICRCADEVESCAAACKDCQPVESSSSSSSEPPRYVCHDWFRGEPGPSCTPDEHK
Function		Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:Q0JR25]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLaMu_01g0001720	OsLaMu_01g0001720.01	Chr01	1309010	1311689	-	NAM
CDS seq	atgaagaccgccatgactacttccacccttctcttcctcctcctcgccggcctcaccgccgccgccctcggcacggcggacgacgacaccaccaccaacaccatacgcctcccgaccgacggaggatcagcacagcaggcgccgacgaagaagaagccgtggaagtgctgcgacaacatcgagcggctgccgacgaagaccaacccgccgcagtggcgctgcaacgacgagctggagcccagcaagtgcgtggcacagtgcgaggtgtgccaggaggcgccggggccattcccgggcccgctcatctgcagcgacgtctactggggcgccgacccgggtcccttctgcacgccgcggccgtggggagattgctgcaccaacaccacctgcaccaggtcgatcccgccgatctgccgctgcaacgacaaggtgaagaagtgcgccgccgcgtgcaaggattgcaagcgggtgaagtcgtcgaagcctcctcgctacgtctgccaggaccagttcaccggccagccagggcccaagtgcaaacactccggcaatatggctacttcttccatccttctcttcctcctcctcggcggcctcaccgtcgccgttgccacccacggcacggcggacgacgacaccaacaccatacgcctccccagcgacggagcaaagtcgccgaagatgccgacggagaagaggccgtggaagtgctgcgacgacatcgaggagcagccggcgaggatcttcccgccgttctggcggtgcaacgacgagctggagcccagccagtgcaccgcccagtgcggggtgtgtcaggaccaggaggcgtcgctgggccggctcatctgcggcgacgtctactggggcgccgacccgggccccttctgcacgccgaggccgtggggagattgctgcgacatggccatctgcagcaggtctctcccgccgatctgccggtgcgctgacgaggtggagtcgtgcgccgccgcgtgcaaggattgccagccggtggagtcgtcgtcgtcgtcgtcgtcggagcctcctcgctacgtctgccatgattggttcagaggcgagccaggtcccagttgcacacccgacgagcacaaataa More
Protein seq	MKTAMTTSTLLFLLLAGLTAAALGTADDDTTTNTIRLPTDGGSAQQAPTKKKPWKCCDNIERLPTKTNPPQWRCNDELEPSKCVAQCEVCQEAPGPFPGPLICSDVYWGADPGPFCTPRPWGDCCTNTTCTRSIPPICRCNDKVKKCAAACKDCKRVKSSKPPRYVCQDQFTGQPGPKCKHSGNMATSSILLFLLLGGLTVAVATHGTADDDTNTIRLPSDGAKSPKMPTEKRPWKCCDDIEEQPARIFPPFWRCNDELEPSQCTAQCGVCQDQEASLGRLICGDVYWGADPGPFCTPRPWGDCCDMAICSRSLPPICRCADEVESCAAACKDCQPVESSSSSSSEPPRYVCHDWFRGEPGPSCTPDEHK More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLaMu_01g0001720	OsLaMu_01g0001720.02	Chr01	1310926	1311717	-	IsoSeq
CDS seq	atgatcgatcgatcgatctgtgtccgt
Protein seq	MIDRSICVR

No AS event found.

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	1.239976	13.206697	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0124650	RBH	16.694363	16.618290	13.875506
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g03390	RBH	9.600693	10.642188	3.054338
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0124600	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0001830	RBH	3.382818	68.049660	44.727913
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0001700	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0001820	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0001740	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0001820	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0022500	RBH	12.2048265	23.5406925	17.7103855
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0001750	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_01G0022500	RBH	61.9955875	122.357986	0.8228405
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0001650	RBH	0.163875	0.853575	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0001830	RBH	1.007758	24.821749	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0001860	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0001820	RBH	2.338716	4.121982	10.411040
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0001690	SBH	0.136021	12.845947	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G001910	RBH	1.592188	5.267444	17.152979
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0001780	RBH	0.559114	83.650063	74.767174

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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