Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0001820 | OGI:01004680 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:1323495-1324172 | ||||||||
| Gene Symbol | RBBI2-3, RBBI2-3 | ||||||||||
| DNA seq | gaatatggagctagctagcaacactgaatgatcgaacgaacgatcagctagctgctagctagggcgagttttattgacggacacagatcgatcgatcgatcatacatatcgatctgcagctagttctcgcacgagtgtttgcacttgggccctggctggccggtgaactggtcctggcagacgtagcgaggaggcttcgacgacttcacccgcttgcaatccttgcacgcggcggcgcacttcttcaccttgtcgttgcagcggcagatcggcgggatcgacctggtgcaggtggtgttggtgcagcaatctcacccccggccgcggcgtgcagaagggacccgggtcggcgccccagtagacgtcgctgcagatgagcgggcccgggaatggccccggcgcctcctggcacacctcgcactgtgccacgcacttgctgggctccagctcgtcgttgcagcgccactgcggcgggttggtcttcgtcggcagccgctcgatgttgtcgcagcacttccacggcttcttcttcgtcggcgcctgctgtgctgatcctccgtcggtcgggaggcgtatggtgttggtggtggtgtcgtcgtccgccgtgccgagggcggcggcggtgaggccggcgaggaggaggaagagaagggtggaagtagtcatggcggtcttcat
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| CDS seq | atgaagaccgccatgactacttccacccttctcttcctcctcctcgccggcctcaccgccgccgccctcggcacggcggacgacgacaccaccaccaacaccatacgcctcccgaccgacggaggatcagcacagcaggcgccgacgaagaagaagccgtggaagtgctgcgacaacatcgagcggctgccgacgaagaccaacccgccgcagtggcgctgcaacgacgagctggagcccagcaagtgcgtggcacagtgcgaggtgtgccaggaggcgccggggccattcccgggcccgctcatctgcagcgacgtctactggggcgccgacccgggtcccttctgcacgccgcggccgggggtgagattgctgcaccaacaccacctgcaccagtgcgccgccgcgtgcaaggattgcaagcgggtgaagtcgtcgaagcctcctcgctacgtctgccaggaccagttcaccggccagccagggcccaagtgcaaacactcgtgcgagaactag
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| Protein seq | MKTAMTTSTLLFLLLAGLTAAALGTADDDTTTNTIRLPTDGGSAQQAPTKKKPWKCCDNIERLPTKTNPPQWRCNDELEPSKCVAQCEVCQEAPGPFPGPLICSDVYWGADPGPFCTPRPGVRLLHQHHLHQCAAACKDCKRVKSSKPPRYVCQDQFTGQPGPKCKHSCEN |
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| Function | Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:Q0JR25] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0001820 | OsLiXu_01g0001820.01 | Chr01 | 1323614 | 1324172 | - | NAM | ||
| CDS seq | atgaagaccgccatgactacttccacccttctcttcctcctcctcgccggcctcaccgccgccgccctcggcacggcggacgacgacaccaccaccaacaccatacgcctcccgaccgacggaggatcagcacagcaggcgccgacgaagaagaagccgtggaagtgctgcgacaacatcgagcggctgccgacgaagaccaacccgccgcagtggcgctgcaacgacgagctggagcccagcaagtgcgtggcacagtgcgaggtgtgccaggaggcgccggggccattcccgggcccgctcatctgcagcgacgtctactggggcgccgacccgggtcccttctgcacgccgcggccgggggtgagattgctgcaccaacaccacctgcaccagtgcgccgccgcgtgcaaggattgcaagcgggtgaagtcgtcgaagcctcctcgctacgtctgccaggaccagttcaccggccagccagggcccaagtgcaaacactcgtgcgagaactag
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| Protein seq | MKTAMTTSTLLFLLLAGLTAAALGTADDDTTTNTIRLPTDGGSAQQAPTKKKPWKCCDNIERLPTKTNPPQWRCNDELEPSKCVAQCEVCQEAPGPFPGPLICSDVYWGADPGPFCTPRPGVRLLHQHHLHQCAAACKDCKRVKSSKPPRYVCQDQFTGQPGPKCKHSCEN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0001820 | OsLiXu_01g0001820.02 | Chr01 | 1323495 | 1323704 | - | IsoSeq | ||
| CDS seq | atgtatgatcgatcgatcgatctgtgtccgtcaataaaactcgccctagctagc |
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| Protein seq | MYDRSIDLCPSIKLALAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.338716 | 4.121982 | 10.411040 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0124650 | RBH | 16.694363 | 16.618290 | 13.875506 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03390 | SBH | 9.600693 | 10.642188 | 3.054338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0124650 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001830 | SBH | 3.382818 | 68.049660 | 44.727913 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001710 | SBH | 0.862722 | 4.318899 | 4.476031 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001830 | SBH | 6.306796 | 39.646538 | 25.145452 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001750 | SBH | 0.679489 | 0.909727 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001830 | SBH | 4.204158 | 39.789726 | 27.581738 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022500 | SBH | 12.2048265 | 23.5406925 | 17.7103855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001760 | SBH | 0.839303 | 6.260625 | 0.527846 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0022500 | SBH | 61.9955875 | 122.357986 | 0.8228405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001650 | SBH | 0.163875 | 0.853575 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001800 | RBH | 0.000000 | 83.186020 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001870 | SBH | 2.365193 | 40.577675 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0000260 | SBH | 1.616567 | 0.0 | 4.557627 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001720 | RBH | 1.239976 | 13.206697 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001910 | SBH | 1.592188 | 5.267444 | 17.152979 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001750 | SBH | 76.036285 | 32.512402 | 3.995320 |
