Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0001630 | OGI:01004710 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:1227309-1231961 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatcgtgcagcaggaccggaggccattgtaggcaccctcccaaaattatgctccatcatagacacgccactattttgactcacatcgttggaccggtccgagacatacgtgttataacttaaattgtggtcgctccgagggtcagggtagaactcgttgtgtgcatcgccaatagcacaacgtgcatcctcaagctcgagacactcttgcaactgcatCACcacttcagtcatagtgagtcgttgtgtcgatgcttgtgcagtgcacgtgaacgcaatgtccatagccttccacacaccatttacatcataatcactaggcatgcatgtgtccacaacatcctcgatgttaccccgtgctagacgttgtcgtgtccagtggatgacgctgatggggtttggttcatgcaagatagccggcttcccagtgaccagctccaataagacgacgccaaagctatagacatcgctctttgttgttgcttgcattgtcatctggtacctgcatgtttagcccgatcaatcagccttatttagcatttgtcactgaaaacaataaacaacaactttgataaatataaatgggcttgtcgtactctggatcgacatatccaaGTgtgccaacgagagcgttcgtggatacatgggtgatgttgtcatagctggatgccttggacaagccaaaatcggcaatctttgcctccaaccttgtgtttAGtaggatgttggtcgccttcacatccctgtgaataataggcggattgcaccctttatgtaggtactctagccctggtcattaaccaaatattaacataagcgatcaagctttggaaaataaaattgtaaaattacagtacattctacctaaaagggtttgttgcagtgcatatggatccattggtatagtgagaattatacacctaaaaaacgatattattgatctacttccaattttgccctacacatttttacttcctatattgtatgtagtatagtagaatttggtccattgattgaaaataatagatgaactctatttataacaatgcaggtgattgatacctctaattttgtccacatcatctactcatcagttaaaagataacgtataatacattagttcagtacactaagccaaatactacaaaataatttctttgaattcatttgttctcaatcttctctttctccgtgtttccccttctcttagagcttgtctcgatgccacctcttgaatgaacagtagctcattctcttttcctctccttctttccttcgtctcatcatccaaacatgcgtcggcctagctattcacctagcatcccactcatattgtactttctctaaggtaaatagacccaacctctaagaacaacttagtaattcaagtagttaccttgtgcagattccaatgcgatattgagcctctctctccatgttaagtattttcccttttttgttttcccctgcaaatgggtaaataaaatgagaattggagatcatgagaggcttatgattgaaatgatccactttatgaagtatcagagtattccctgttggccagtcatagatagtatacatgcatacctacaatatgttcttctagggttccttctggcatgtactcgtagacaagagccatgtatatcccatccttgcagtaactgatcatagatacaagattcttatggtgaatccgggtcaaaatttgagcctaagcatgcaaatgaacttaattattctctagtgggattttttttccgtagtaggatttccatatatgtagcaagatcattaatatagtgaaaagattctacctctatgaggaactccttagcaccttggcttgaggattcagatcgcaacttgaccgccacttctgtgccatcctccaagaagccatggtagacatatccgaaccctccccgtccgagcactcgtttgaatttgttggttatcttctctagttctttatatgtaaaccgacggttctcaagccgcagcgatacattgtcaccatatccactatttatcagcacgtggcttgttgatgtcgacatctcgttttgctgctctagagaattgttcattggtccttcatatgcgaaaaatagaattattgtagcattagtggtgttcaaggatgaagtcgaatagacaattgctactccctcctttccatattataagttgttctaagtttattatataaccgtgttagagttaaagaactttgacgtaggacaaaattaaaatgacttacaatatggaatggacggagttgtatataccatggcaaacactcaccttgcttttttcgtctcagcaggcaaaagagtgttgtaactgatgctatcaatacaaccagaactgcaggaataactgtgtagatggctagcttgctcttctttttagctgccttgcatgaattgccgttgatgcataggtttggattatttccatatctaccaatggcatgaacgtgtttagtcaaaatggcaaaaagtttggcctagtgtttgctgaagaaattaagtttggtaagagaatgtaatatgcaCTTACcttacatttaaggagccatcttgaatcctcttgagaattccagatggaattgatccactgagttgatttcctgtcagatctctgacgaaaccatataatgtgtatttcagttaaaaatgatgcaagcaggtatatataatataatttgacaaaagttgcattgccaaacttacaaaactctcaaggaaggtaattgtgagaggacatccggaattgagccggtcaaactgttgtttgatagatccctgcaagatgtggatcaagaagcataaaaacaagatatggaacaggttattccaaatataacaataaaatatcacaaataagcataaaaaaaatgttaacatgctgagctcagaacgtacaagtattgaagagccttgagattcccaaaagcggatgatatgtcagcactcaaaccactggaggacagatttctgcaaaaggagaatatatatgatcggccgatacagtttagttcgttaaaTatatagttaactaccctgtttttcatgaggacaattaagttcgtattcagcaaatacatggactgaattacttacaagcttatgattcttgcaccgctcgaattgggatagctgcaggtcagcttgtcccacgcaaatgtctttggcatacacgggtcacccatccaattcttcttgacttggtacttgtccttgatcgccatcatggaagatgctgcacacagattttcaacaataccaagagacacgatgtgcttgagcatatatatcatcagcttgatcatgtatgtatgtacaagtgctaattacatgcatgtgtgtgcataaacttaccatcctgcgagtccgtgccgatgactgcggtggagatgatcgagaaaatctcggcggcgttgatgagcggcggcagcgtcgagttggcggtagcgttgatggtgatattgtacctggaggttctttcaaggggctccaagccatataagtatctcgctgtaaggtatgtcggctcgtaagcagtatcgatcaacggttcgccgttgagattgatgtagaactggcgcgaggcgttgttggtgaggatctccagctcggagaagtggaagatgacaGTgtacggcggcgtcgggtcgtttggctgcggccaaggctcccaaaagaagtagatgttacctgacgcgttgcgcggcgtcactgccgtctgcatcaccgccgtcggcgcatcgaatatgtctccgtctaagttatctaccctcgacgccgtggatatctccttccataagctcgatgtatagctgtcccagtttccccaaaatctgtcatgtgggtcatctgggtacctgacgaggctgttatcagtcgggccaaagttgaggcggttgagctggaggaggcccagcgtggcgttcacctgcggatagagccttttgtccagaggcctcagctccagcgaggagatgaagggcgtgccggtgccagtgttgatcaggcagacctgcacaaagtcatcgggcaccaccacgatggcctcctcataacgagagccgccgaggccgaggctcgtgatgttcaccatggtccagaagttgacgccaatgtagagatgaaacaccggcagcttgttgaggccgtcgtagttgccatacaagaaagaggcgcggatgaggtacttgatcccaggcgccagcgaccgggccgtgtagcagttgcgcgcaccgtcggggaaggcacgcaagttgtagtaccgctgcgagagctgcggtttgatgtactccggcgaaacgttgtagttggagccgccgtcggtgaagtcgtcgtcggcgacgtaggatatcttggtcgtgttgtgcacgtagctcgtgttcggctggataccacagtctatgctaatgaaacctgcagcatgcaaaattcattaagggcaaaaggcccaatcgagcacctacgtgcatgcATATatatatatatatatatatatatatatatatatcctgatgatgatactattagttgtacctttgctgtctggctgtgcacgagattggaatacgccgtcggcgaagcagagaagaagaagcaaccacggcagcagtgaacgctccat
More
|
||||||||||
| CDS seq | atggagcgttcactgctgccgtggttgcttcttcttctctgcttcgccgacggcgtattccaatctcgtgcacagccagacagcaaaggtttcattagcatagactgtggtatccagccgaacacgagctacgtgcacaacacgaccaagatatcctacgtcgccgacgacgacttcaccgacggcggctccaactacaacgtttcgccggagtacatcaaaccgcagctctcgcagcggtactacaacttgcgtgccttccccgacggtgcgcgcaactgctacacggcccggtcgctggcgcctgggatcaagtacctcatccgcgcctctttcttgtatggcaactacgacggcctcaacaagctgccggtgtttcatctctacattggcgtcaacttctggaccatggtgaacatcacgagcctcggcctcggcggctctcgttatgaggaggccatcgtggtggtgcccgatgactttgtgcaggtctgcctgatcaacactggcaccggcacgcccttcatctcctcgctggagctgaggcctctggacaaaaggctctatccgcaggtgaacgccacgctgggcctcctccagctcaaccgcctcaactttggcccgactgataacagcctcgtcaggtacccagatgacccacatgacagattttggggaaactgggacagctatacatcgagcttatggaaggagatatccacggcgtcgagggtagataacttagacggagacatattcgatgcgccgacggcggtgatgcagacggcagtgacgccgcgcaacgcgtcaggtaacatctacttcttttgggagccttggccgcagccaaacgacccgacgccgccgtacACtgtcatcttccacttctccgagctggagatcctcaccaacaacgcctcgcgccagttctacatcaatctcaacggcgaaccgttgatcgatactgcttacgagccgacataccttacagcgagatacttatatggcttggagccccttgaaagaacctccaggtacaatatcaccatcaacgctaccgccaactcgacgctgccgccgctcatcaacgccgccgagattttctcgatcatctccaccgcagtcatcggcacggactcgcaggatgcatcttccatgatggcgatcaaggacaagtaccaagtcaagaagaattggatgggtgacccgtgtatgccaaagacatttgcgtgggacaagctgacctgcagctatcccaattcgagcggtgcaagaatcataagcttaaatctgtcctccagtggtttgagtgctgacatatcatccgcttttgggaatctcaaggctcttcaatacttggatctatcaaacaacagtttgaccggctcaattccggatgtcctctcacaattaccttccttgagagttttagatctgacaggaaatcaactcagtggatcaattccatctggaattctcaagaggattcaagatggctccttaaatgtaagatatggaaataatccaaacctatgcatcaacggcaattcatgcaaggcagctaaaaagaagagcaagctagccatctacacagttattcctgcagttctgcaaaacgagatgtcgacatcaacaagccacgtgctgataaatagtggatatggtgacaatgtatcgctgcggcttgagaaccgtcggtttacatataaagaactagagaagataaccaacaaattcaaacgagtgctcggacggggagggttcggatatgtctaccatggcttcttggaggatggcacagaagtggcggtcaagttgcgatctgaatcctcaagccaaggtgctaaggagttcctcatagaggctcaaattttgacccggattcaccataagaatcttgtatctatgatcagttactgcaaggatgggatatacatggctcttgtctacgagtacatgccagaaggaaccctagaagaacatattgtaggggaaaacaaaaaagggaaaatacttaacatggagagagaggctcaatatcgcattggaatctgcacaaggtgtataattctcactataccaatggatccatatgcactgcaacaaacccttttagggctagagtacctacataaagggtgcaatccgcctattattcacagggatgtgaaggcgaccaacatcctaCTaaacacaaggttggaggcaaagattgccgattttggcttgtccaaggcatccagctatgacaacatcacccatgtatccacgaacgctctcgttggcacACttggatatgtcgatccagagtaccagatgacaatgcaagcaacaacaaagagcgatgtctatagctttggcgtcgtcttattggagctggtcactgggaagccggctatcttgcatgaaccaaaccccatcagcgtcatccactggacacgacaacgtctagcacggggtaacatcgaggatgttgtggacacatgcatgcctagtgattatgatgtaaatggtgtgtggaaggctatggacattgcgttcacgtgcactgcacaagcatcgacacaacgactcactatgactgaagtgGTGatgcagttgcaagagtgtctcgagcttgaggatgcacgttgtgctattggcgatgcacacaacgagttctaccctgaccctcggagcgaccacaatttaagttataacacgtatgtctcggaccggtccaacgatgtgagtcaaaatagtggcgtgtctatgatggagcataattttgggagggtgcctacaatggcctccggtcctgctgcacgataa
More
|
||||||||||
| Protein seq | MERSLLPWLLLLLCFADGVFQSRAQPDSKGFISIDCGIQPNTSYVHNTTKISYVADDDFTDGGSNYNVSPEYIKPQLSQRYYNLRAFPDGARNCYTARSLAPGIKYLIRASFLYGNYDGLNKLPVFHLYIGVNFWTMVNITSLGLGGSRYEEAIVVVPDDFVQVCLINTGTGTPFISSLELRPLDKRLYPQVNATLGLLQLNRLNFGPTDNSLVRYPDDPHDRFWGNWDSYTSSLWKEISTASRVDNLDGDIFDAPTAVMQTAVTPRNASGNIYFFWEPWPQPNDPTPPYTVIFHFSELEILTNNASRQFYINLNGEPLIDTAYEPTYLTARYLYGLEPLERTSRYNITINATANSTLPPLINAAEIFSIISTAVIGTDSQDASSMMAIKDKYQVKKNWMGDPCMPKTFAWDKLTCSYPNSSGARIISLNLSSSGLSADISSAFGNLKALQYLDLSNNSLTGSIPDVLSQLPSLRVLDLTGNQLSGSIPSGILKRIQDGSLNVRYGNNPNLCINGNSCKAAKKKSKLAIYTVIPAVLQNEMSTSTSHVLINSGYGDNVSLRLENRRFTYKELEKITNKFKRVLGRGGFGYVYHGFLEDGTEVAVKLRSESSSQGAKEFLIEAQILTRIHHKNLVSMISYCKDGIYMALVYEYMPEGTLEEHIVGENKKGKILNMEREAQYRIGICTRCIILTIPMDPYALQQTLLGLEYLHKGCNPPIIHRDVKATNILLNTRLEAKIADFGLSKASSYDNITHVSTNALVGTLGYVDPEYQMTMQATTKSDVYSFGVVLLELVTGKPAILHEPNPISVIHWTRQRLARGNIEDVVDTCMPSDYDVNGVWKAMDIAFTCTAQASTQRLTMTEVVMQLQECLELEDARCAIGDAHNEFYPDPRSDHNLSYNTYVSDRSNDVSQNSGVSMMEHNFGRVPTMASGPAAR |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g51860 [UniProtKB/Swiss-Prot:C0LGG4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0001630 | OsLima_01g0001630.01 | Chr01 | 1227309 | 1231961 | - | NAM | ||
| CDS seq | atggagcgttcactgctgccgtggttgcttcttcttctctgcttcgccgacggcgtattccaatctcgtgcacagccagacagcaaaggtttcattagcatagactgtggtatccagccgaacacgagctacgtgcacaacacgaccaagatatcctacgtcgccgacgacgacttcaccgacggcggctccaactacaacgtttcgccggagtacatcaaaccgcagctctcgcagcggtactacaacttgcgtgccttccccgacggtgcgcgcaactgctacacggcccggtcgctggcgcctgggatcaagtacctcatccgcgcctctttcttgtatggcaactacgacggcctcaacaagctgccggtgtttcatctctacattggcgtcaacttctggaccatggtgaacatcacgagcctcggcctcggcggctctcgttatgaggaggccatcgtggtggtgcccgatgactttgtgcaggtctgcctgatcaacactggcaccggcacgcccttcatctcctcgctggagctgaggcctctggacaaaaggctctatccgcaggtgaacgccacgctgggcctcctccagctcaaccgcctcaactttggcccgactgataacagcctcgtcaggtacccagatgacccacatgacagattttggggaaactgggacagctatacatcgagcttatggaaggagatatccacggcgtcgagggtagataacttagacggagacatattcgatgcgccgacggcggtgatgcagacggcagtgacgccgcgcaacgcgtcaggtaacatctacttcttttgggagccttggccgcagccaaacgacccgacgccgccgtacACtgtcatcttccacttctccgagctggagatcctcaccaacaacgcctcgcgccagttctacatcaatctcaacggcgaaccgttgatcgatactgcttacgagccgacataccttacagcgagatacttatatggcttggagccccttgaaagaacctccaggtacaatatcaccatcaacgctaccgccaactcgacgctgccgccgctcatcaacgccgccgagattttctcgatcatctccaccgcagtcatcggcacggactcgcaggatgcatcttccatgatggcgatcaaggacaagtaccaagtcaagaagaattggatgggtgacccgtgtatgccaaagacatttgcgtgggacaagctgacctgcagctatcccaattcgagcggtgcaagaatcataagcttaaatctgtcctccagtggtttgagtgctgacatatcatccgcttttgggaatctcaaggctcttcaatacttggatctatcaaacaacagtttgaccggctcaattccggatgtcctctcacaattaccttccttgagagttttagatctgacaggaaatcaactcagtggatcaattccatctggaattctcaagaggattcaagatggctccttaaatgtaagatatggaaataatccaaacctatgcatcaacggcaattcatgcaaggcagctaaaaagaagagcaagctagccatctacacagttattcctgcagttctgcaaaacgagatgtcgacatcaacaagccacgtgctgataaatagtggatatggtgacaatgtatcgctgcggcttgagaaccgtcggtttacatataaagaactagagaagataaccaacaaattcaaacgagtgctcggacggggagggttcggatatgtctaccatggcttcttggaggatggcacagaagtggcggtcaagttgcgatctgaatcctcaagccaaggtgctaaggagttcctcatagaggctcaaattttgacccggattcaccataagaatcttgtatctatgatcagttactgcaaggatgggatatacatggctcttgtctacgagtacatgccagaaggaaccctagaagaacatattgtaggggaaaacaaaaaagggaaaatacttaacatggagagagaggctcaatatcgcattggaatctgcacaaggtgtataattctcactataccaatggatccatatgcactgcaacaaacccttttagggctagagtacctacataaagggtgcaatccgcctattattcacagggatgtgaaggcgaccaacatcctaCTaaacacaaggttggaggcaaagattgccgattttggcttgtccaaggcatccagctatgacaacatcacccatgtatccacgaacgctctcgttggcacACttggatatgtcgatccagagtaccagatgacaatgcaagcaacaacaaagagcgatgtctatagctttggcgtcgtcttattggagctggtcactgggaagccggctatcttgcatgaaccaaaccccatcagcgtcatccactggacacgacaacgtctagcacggggtaacatcgaggatgttgtggacacatgcatgcctagtgattatgatgtaaatggtgtgtggaaggctatggacattgcgttcacgtgcactgcacaagcatcgacacaacgactcactatgactgaagtgGTGatgcagttgcaagagtgtctcgagcttgaggatgcacgttgtgctattggcgatgcacacaacgagttctaccctgaccctcggagcgaccacaatttaagttataacacgtatgtctcggaccggtccaacgatgtgagtcaaaatagtggcgtgtctatgatggagcataattttgggagggtgcctacaatggcctccggtcctgctgcacgataa
More
|
|||||||
| Protein seq | MERSLLPWLLLLLCFADGVFQSRAQPDSKGFISIDCGIQPNTSYVHNTTKISYVADDDFTDGGSNYNVSPEYIKPQLSQRYYNLRAFPDGARNCYTARSLAPGIKYLIRASFLYGNYDGLNKLPVFHLYIGVNFWTMVNITSLGLGGSRYEEAIVVVPDDFVQVCLINTGTGTPFISSLELRPLDKRLYPQVNATLGLLQLNRLNFGPTDNSLVRYPDDPHDRFWGNWDSYTSSLWKEISTASRVDNLDGDIFDAPTAVMQTAVTPRNASGNIYFFWEPWPQPNDPTPPYTVIFHFSELEILTNNASRQFYINLNGEPLIDTAYEPTYLTARYLYGLEPLERTSRYNITINATANSTLPPLINAAEIFSIISTAVIGTDSQDASSMMAIKDKYQVKKNWMGDPCMPKTFAWDKLTCSYPNSSGARIISLNLSSSGLSADISSAFGNLKALQYLDLSNNSLTGSIPDVLSQLPSLRVLDLTGNQLSGSIPSGILKRIQDGSLNVRYGNNPNLCINGNSCKAAKKKSKLAIYTVIPAVLQNEMSTSTSHVLINSGYGDNVSLRLENRRFTYKELEKITNKFKRVLGRGGFGYVYHGFLEDGTEVAVKLRSESSSQGAKEFLIEAQILTRIHHKNLVSMISYCKDGIYMALVYEYMPEGTLEEHIVGENKKGKILNMEREAQYRIGICTRCIILTIPMDPYALQQTLLGLEYLHKGCNPPIIHRDVKATNILLNTRLEAKIADFGLSKASSYDNITHVSTNALVGTLGYVDPEYQMTMQATTKSDVYSFGVVLLELVTGKPAILHEPNPISVIHWTRQRLARGNIEDVVDTCMPSDYDVNGVWKAMDIAFTCTAQASTQRLTMTEVVMQLQECLELEDARCAIGDAHNEFYPDPRSDHNLSYNTYVSDRSNDVSQNSGVSMMEHNFGRVPTMASGPAAR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0195200 | SBH | 0.160547 | 0.000000 | 4.506700 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0195200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001810 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001690 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001810 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001810 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022300 | SBH | 27.8467865 | 69.9584235 | 304.7526475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001740 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0025000 | SBH | 2.1046185 | 14.408624 | 0.470085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001820 | RBH | 0.0 | 1.178025 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001810 | SBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001710 | RBH | 0.0 | 20.865931 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001900 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001770 | RBH | 0.0 | 0.0 | 0.0 |
