Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0064390 | OGI:11017320 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg481:605179-609318 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgaggatgattttgtgtgttggaggaaggacaaccccaagagctgcttgatgtacctctcgctgagctgcctagttgagaatatgtttttttgttttggggactgtgaacaacatgtttggttcccaatgaaacccaaagaaacccattggtaaatcagatcatctttaactatcttgtgacctttcggaaagattgcacaataggcaaaacataatttcaagtatgaaggcatactgctataggttaacatcaaggatgcaagcacattctgatctggtaagtgtgaagaagatataatattccagatgtcattgtctttcaccgactcccattcatcacgggctggtttggtttgaggcctaaattgaccttaccaatatttggcaattttaatagtgtttagtgtctatttggtttgaagccaaattttggcatacctaagaaaataggccatttcaatagttaacttaggctattttggcttcaatccaaacataactttgccttgccaaaattagccatgccaaaacttgccagaatttggcattgacaaaaattggtaaggccaatttaggtcacaaaccaaaccagccccacgtgtcattgattgcaacatatatccaagtgattcagctgctaaggcaccacctccacacttctttgaaatgtcccttcctatcttctgcaacttttctttatcatcttctctagattcaaaggcactcttttgctttattatagcccaacacatgtcatctgttaagtgtgctaatttgtgtgcttgaatggtatgaaatttctttgcaatgtccccattacgtgtggttactacaacaaccaccttactgacttcaccaacctttagcatacccgtcaaattatccaattgagatccattattctcccacaggtcatctagaactattagagtcttctttccagcaagtagcttttcaaggcgattacataccatctgctttcgactcaactggctctcctcttctgttagttgtgatattatagagttgccaattttattcaagtcaaatatttgtgacacgtagacccatacccgagagtagtctttaaattgggtgtcattgaaaaccagttttgccaaagttgtcttgcctatgcctccaatgccatatataggaaggactgtaaaatcatttgtcatgctcttagataaagagtccattattatttgtttatcttcagctctccctatgatgagtgttttatctaccgtggatgatgtttcccgttcatctggaatgttgaccccattggcggtaggagctaccttcaatgtgaaactggtgtgttcatctgtgatcaccttcagttctcccctcattgccttcattttattagcgagaattatcctgggaccaactgtgagacatgggatcatggttgctaactgcaagagaacctttttgatggacgactgcaaaacatgaatttatttccaaagtcaacaaaatgctaatttaaaatataaaattgttaatattatcatatattttaagAaaaaaaatataagtgcattttccattacaaatttacgtttacccattttatgctcctcagctcctaacaaattttgtcttggacaatagaacagtttccagagcttcacatacaattttcttatgaagatgtcactgaaaatgcataagaatatatataattatctcaaagtttgttttatgctgctggtaccatttacatttccaaacagtgtacagttttatatctttcgcaactcagtgattctaaaagaaataattaatgcagttcatcctaatgtgcatttatttacaaatggatcagtaattatcaaccagaaaattaaatgcatcggtaaatgaattaaaaactttctatattttaaaatgcaatttttattttaaaaaataaaaacttcctatgacaaacaataaatggattcgttaagtttgtgtaacacccctactcttgtttagtaattgaaaactgtttaaataaaatcctattttcaaaaatgttggttttacgaacaatttctagtgccaaaaacatctctaataaatcccaccttgtgacccataaaattctaatccaattttcaattttcttatggaaataaatctccgaattcgaacacccttccatagctgcttataaaattcctttgaatttcctatccaaatccaatccaaaaatctaaaactcatcaattgtgttctatcaaaattctaaaactcagcacgtctcgcctacctcgccgctccctacggtcgtggccggtgacagcggcgcctccctcctccctcccatttcctcactctctctcttcatttccccttctaccttccctctttttcccttgttttctacagatctaaggcgacccgggggacatcagtcctaagcctgactctcctcccaacgagcggcgccggtggcagcggtgaaagtggcgagggggacaaccggatctgcccaccctagctaggtccagatccggtgcctctccggcgggatccaatcatctctctggcatgagaggccagatccccattgcgacggtggtggtgaaggcagcaaGggggcataaatataacaataatatatatgtctgtatctttatatcgcagtcctctccttttattttgttctctttggctagggtttgacatgtcgtagtcttcatctaccgccgaactccttttgtatcgttgtgccactcaatcatctatcgatcgacccattctctcgtattttctgttagatttaattgggtaattgatctatttaaatcaattaaatcaaataaattccaaggctcattatgctaggaattcatgtgaattcattcttctatgggatatcaatgggatgaagagttttgagaatgaatccatttgattaaggaattggtaacttatatcaattagtcctaattgatggatggttgatggttgtgtagtggaggatggttcatggctagttgatgacaattagttgctctattcctcttcctattccattggtaacttacatcaattactcttaattgattgttggttgatggttgtgtagtggaggatggttcatggctagttgatgacaattagttgctccattcctcttcctattccatgactcttactcttcatcttccattcctcttataaaatgggaatggatttgatctcccgcgagaaaaaagaagacacactttcatccattttccaaagctgttgttgctacggtaatcccatcccgacgagtgtgtgcacacgcgttgggagagtaggcctccgaaaccacgcgttgctgcgacgtttgcacagacgggcgggcgatcaggtttttggggagcgcaaggcgcgactactcactgttcgtcaacatctacttcatcttcaccaacatgtcgaacactggagacaaggagaaggagactcctgtcaacaccaacggaggcaatactgcctcaaacaccagcggaggaccattcttggggtataaccttattacattatttcaattagaagttttactgttaatgttcatcgcaatgtcaacattgtgtcattatgtgattgttgatgcttattcaacgttaagcatgctcatgttgattacattcaccattatcactggatcaaatcccattgtaaatatcatgtttattatcttgttattttggattaaaatatgtcgaattataaccaaatttccaacattttctctttccgttgcaaagcagtacaagtgcatattgctagtatataatgattctcaaataaatccagtgcaatggcaagcaagtgcgcatacataccatttttttggccggtggttgaatcccttgtgtgtcagcttcaaattcatcaatcatgtcggagatggcgaacgtggcacttttgagccgtttcagccacatccgcaccgacgcctccttgatggactgcttctcggcgtcctcgagcaccgccgccacagactccagcgtcgatttcattttcttcaggtcgtcgttgaagtcccactgcagagtgatctggactgcaatcacggaagagatctgctgcccaacgaaattcaggacagcggcggcaagcatacccccgacttccgccat
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| CDS seq | atggcggaagtcgggggtatgcttgccgccgctgtcctgaatttcgttgggcagcagatctcttccgtgattgcagtccagatcactctgcagtgggacttcaacgacgacctgaagaaaatgaaatcgacgctggagtctgtggcggcggtgctcgaggacgccgagaagcagtccatcaaggaggcgtcggtgcggatgtggctgaaacggctcaaaagtgccacgttcgccatctccgacatgattgatgaatttgaagctgacacacaagggattcaaccaccggccaaaaaaatgttagcaaccatgatcccatgtctcacagttggtcccaggataattctcgctaataaaatgaaggcaatgaggggagaactgaaggtgatcacagatgaacacaccagtttcacattgaaggtagctcctaccgccaatggggtcaacattccagatgaacgggaaacatcatccacggtagataaaacactcatcatagggagagctgaagataaacaaataataatggactctttatctaagagcatgacaaatgattttacagtccttcctatatatggcattggaggcataggcaagacaactttggcaaaactggttttcaatgacacccaatttaaagactactctcgggtatgggtctacgtgtcacaaatatttgacttgaataaaattggcaactctataatatcacaactaacagaagaggagagccagttgagtcgaaagcagatggtatgtaatcgccttgaaaagctacttgctggaaagaagactctaatagttctagatgacctgtgggagaataatggatctcaattggataatttgacgggtatgctaaaggttggtgaagtcagtaaggtggttgttgtagtaaccacacgtaatggggacattgcaaagaaatttcataccattcaagcacacaaattagcacacttaacagatgacatgtgttgggctataataaagcaaaagagtgcctttgaatctagagaagatgataaagaaaagttgcagaagataggaagggacatttcaaagaagtgtggaggtcacaagatagttaaagatgatctgatttaccaatgggtttctttgggtttcattgggaaccaaacatgttgttcacagtccccaaaacaaaaaaacatattctcaactaggcagctcagcgagaggtacatcaagcagctcttggggttgtccttcctccaacacacaaaatcatcctcg
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| Protein seq | MAEVGGMLAAAVLNFVGQQISSVIAVQITLQWDFNDDLKKMKSTLESVAAVLEDAEKQSIKEASVRMWLKRLKSATFAISDMIDEFEADTQGIQPPAKKMLATMIPCLTVGPRIILANKMKAMRGELKVITDEHTSFTLKVAPTANGVNIPDERETSSTVDKTLIIGRAEDKQIIMDSLSKSMTNDFTVLPIYGIGGIGKTTLAKLVFNDTQFKDYSRVWVYVSQIFDLNKIGNSIISQLTEEESQLSRKQMVCNRLEKLLAGKKTLIVLDDLWENNGSQLDNLTGMLKVGEVSKVVVVVTTRNGDIAKKFHTIQAHKLAHLTDDMCWAIIKQKSAFESREDDKEKLQKIGRDISKKCGGHKIVKDDLIYQWVSLGFIGNQTCCSQSPKQKNIFSTRQLSERYIKQLLGLSFLQHTKSSS |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0064390 | OsLiXu_Ung0064390.01 | ChrUN-Ctg481 | 605179 | 609318 | - | NAM | ||
| CDS seq | atggcggaagtcgggggtatgcttgccgccgctgtcctgaatttcgttgggcagcagatctcttccgtgattgcagtccagatcactctgcagtgggacttcaacgacgacctgaagaaaatgaaatcgacgctggagtctgtggcggcggtgctcgaggacgccgagaagcagtccatcaaggaggcgtcggtgcggatgtggctgaaacggctcaaaagtgccacgttcgccatctccgacatgattgatgaatttgaagctgacacacaagggattcaaccaccggccaaaaaaatgttagcaaccatgatcccatgtctcacagttggtcccaggataattctcgctaataaaatgaaggcaatgaggggagaactgaaggtgatcacagatgaacacaccagtttcacattgaaggtagctcctaccgccaatggggtcaacattccagatgaacgggaaacatcatccacggtagataaaacactcatcatagggagagctgaagataaacaaataataatggactctttatctaagagcatgacaaatgattttacagtccttcctatatatggcattggaggcataggcaagacaactttggcaaaactggttttcaatgacacccaatttaaagactactctcgggtatgggtctacgtgtcacaaatatttgacttgaataaaattggcaactctataatatcacaactaacagaagaggagagccagttgagtcgaaagcagatggtatgtaatcgccttgaaaagctacttgctggaaagaagactctaatagttctagatgacctgtgggagaataatggatctcaattggataatttgacgggtatgctaaaggttggtgaagtcagtaaggtggttgttgtagtaaccacacgtaatggggacattgcaaagaaatttcataccattcaagcacacaaattagcacacttaacagatgacatgtgttgggctataataaagcaaaagagtgcctttgaatctagagaagatgataaagaaaagttgcagaagataggaagggacatttcaaagaagtgtggaggtcacaagatagttaaagatgatctgatttaccaatgggtttctttgggtttcattgggaaccaaacatgttgttcacagtccccaaaacaaaaaaacatattctcaactaggcagctcagcgagaggtacatcaagcagctcttggggttgtccttcctccaacacacaaaatcatcctcg
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| Protein seq | MAEVGGMLAAAVLNFVGQQISSVIAVQITLQWDFNDDLKKMKSTLESVAAVLEDAEKQSIKEASVRMWLKRLKSATFAISDMIDEFEADTQGIQPPAKKMLATMIPCLTVGPRIILANKMKAMRGELKVITDEHTSFTLKVAPTANGVNIPDERETSSTVDKTLIIGRAEDKQIIMDSLSKSMTNDFTVLPIYGIGGIGKTTLAKLVFNDTQFKDYSRVWVYVSQIFDLNKIGNSIISQLTEEESQLSRKQMVCNRLEKLLAGKKTLIVLDDLWENNGSQLDNLTGMLKVGEVSKVVVVVTTRNGDIAKKFHTIQAHKLAHLTDDMCWAIIKQKSAFESREDDKEKLQKIGRDISKKCGGHKIVKDDLIYQWVSLGFIGNQTCCSQSPKQKNIFSTRQLSERYIKQLLGLSFLQHTKSSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0212100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10620 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0212100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007100 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007150 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006990 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007010 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007000 | RBH | 6.293403 | 18.798403 | 15.241825 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0092500 | SBH | 0 | 0.378942 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006990 | RBH | 0.265612 | 0.373630 | 1.365511 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0099400 | SBH | 0 | 0.0893075 | 0.015486 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006990 | RBH | 3.082204 | 1.990578 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007010 | RBH | 1.113749 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007150 | SBH | 1.603995 | 13.509791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007080 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007110 | RBH | 0.280194 | 5.345597 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007160 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007010 | SBH | 0.0 | 1.563471 | 0.0 |
