Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0053610 | OGI:99052890 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg416:61487-64694 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGGTAAATTTTCTTCTTATCTGAGTAAATACACTCATTGTCTAGAAAAAAATCTGAGTCAATACACAAATTTCAGGGTGGTTTTAGCTGGCATTTGTAGAATTGATACATACAAAAAAAAATGGCTCTTTCGGTCTGATAAAAAATCATCTTTCTGAAGTAGCTGCAAGCCGTCAGCAGCTTTTATCTTCTGCCTTCATAGCATCTACCGTTTGCCATTTCATGTCAGGTGTACCTGCCATTCTCAAGAAGCTTCCACCTAATAGATAGATGTTGCAACTCTAAGTAATCCGTTTTCAGAAGTATGGTATATTTTACCACAATAAGTTACTAGTACATTAGTGTATGCATGCTACAGGTCCCTCTATGAACTTTTTGAGCTTTCCTGGGATGCTTTGAAGATGCGAAATGCAGCTATGCACATTGTAATGTTACCAATCACTGTTAGAGCACCTTGGAGCGCTACAAGCACCTGCAGATAGTTTTCAAAAAAAAAAAAAAAAGAACCACGAAGAGAATTAACTTGAGTAGAAAAAAAATATCGAAAACACTAGTTGAATTATACTATTGTATGTTTTTACAATAAGAGAGTATCTCGATAATACTAAAAAAAATCGCATGCATAGACTTGCACAAAAAGAACTGTGGAGAACAGTTCCACTGTCTAATCATCTGTGTTTCATGTGCATTGATTTAAAGGCAAATAGACACTAGACCAATTGAAATGTCAGGATAGGCCAAGTAATGAAGTGATATTTGACAAGTGTGAACAGTTGCAAAACACTGGGAAGGAAATGATGATAATGTTGATGAACGGAAAAAAAATAGGAAGCATTAGTGTTTCAACTGTAGGGATATATTTTACCTCAAGAGACTCCGAATTATAGAAGAAATGCCACGTGCAAGCGCACATCGCTCCACCAAGAAGTGGAACCTATTATACAAAGAAAAAAAATGCAAATCTGAGTAGTCAACAATCATAAAGTAAGCTGTTGAAAAAATCAGTCGAAAACTTGTGAACAACTGCAACTACCATCAGCAAAGACCTTACTATATAGTAGTAGTAGTAGTATAGATAATAGAAGCCACACATAAGTAAAGAGGGGGTACTTACAGATTAGATTCACTGAAAACAACACAAGATTTCTTGTGATGAAAACATAACATAAATAAATATGAGACATTCTCCTCCCACTCTCTGAATCTTACTACTAATACACAGGAGTACATGAAGCTACTAGGTTGTACAAAAATTAACATTAGCCAACACAAATTTTATCAGCAAATGCATCATCATTTAATCCAAATTTATTACACTCACCATTCCTCAAGAGAGGTCTTTCCAACCCTTGAGCCCCGTCCTCTCCCCGTAGCTCCAAACCAGCATCATGGCCGTCACCCTATAAAATCCAGACAGAACAGGCGATACTGATGGTAGTAGTATGATGCACAGATACGCGATACTGGTACGACGATACGGATATGTCGATACTTTGATACGGGAATTTTCAAAAACATCAATGCGCCGATACGGCGAGTGTATATATATTTCATAAAATGAAAAATATAGAAACACTTTAACAAGGGTGAAATAATCCTTACACTGTTCATTGCATGCTTAGCATTTTTAATACCTTTGCTGGTTGATAAGCTCAATCGTGGGACCCACCTGGCCAACTCAATTAAATCGCTACCTCTCTAATCAGAAAGACACAAGGTCACAAGCAAATGCTGTAGTCCCGGCCGGCTGCTTCTCTCCCAGTCCTCATCAACTAGCTCCTCCTCCCGGCGTTTCCTCCTAGGCCAGCGCCTCTGTGGCTTCTCCTCTCCCCTCCCCCGAGCCCTAGTCAGACGGCCGGGCGACGATGAAGCATGAAGCCGTCGTCGTCTCGATCTGATGGAGACGGCCATGGCTGACGGATGGATGCTCCCCCCATCCGTGGTTGCTGCTAGCCTGCTACTACCCACTCCATGGTGTATTCGTAACTGGTGAGGAGCCAGGACTGAGGAGGTCCTTGTCTCCTCGATACGTATCAAACCAAAGTATCTAATCCGTATCCATGGAGTATCGGTAATTATTTTGATTTATTTTCGCTCTTAAATAATCGATACTTCGTCGATACCTTATCGATGACGTATCCCGCATATCGCCGTATCCGATACGTATCCCATACGGGAACGGCTGTCGAGAGCCGTATCTGTGCATCATACTCTGATTCTACTCCCCGCATCTTTTGCAGCCACGGAAGCAAGAGGTAGTTAGGTAGGGTAGTAGCAGTACCACTCGGCGACGCTGGAGACGTGGACGGCCCAGGTGGGCAGCGAGAGCGCGTTCGCCGGCTGGGCGGCGGCCAACGCGGCGAGCACTGGCGGGGAGGCCGCGGCTACTCGTCGGGGCCACGGCGGCGGCGGTGGCGCAGGCGACCGCGACGATGAGGCGGAGATGCGCCATTGGTGGGATGGGGAGCTTGGCGTTCTCACACAGGGTCTGTTTGGTTCCCGGCCAAACATTGCCACGCCTAAGCTTAAGAATTTGTCACAATGGTGGCTAGCCATACTTTGTGGCTAAATTAGACTGTTTGGTTTGCAACTAAGGTGTGGCAAAAATATTGTGGGTGCTATTTAGATTGATGCCACAAATGTTTGGCAAAAATTTGTGGTAGATGTTTGGATTGCAACCACATCTTGATAAAAACACCCAGTGGTAAGGTTACCCTCCTCACAAAGCAATCACATTTCAGCAGCAAAATGTATATAAGTAGATTGGAATTAAAGTGCACATGTATTGAAATATTAGTCCAGCTAAAGATAACACTCCAGTAACACTAGTTGAGCTATTACAATAATATCATCAACCATCCAACTAAAACTATTTCAATGACATTTTCTAGCCATTTGTCATGACCACACTGCTAAAATTAGACAACCAACAGCTAATACATATATTCTAGCCATCATTCCTTATAACACAAAGTCAAAATGAGTGCACAGCCATACAGAAGTTCATGTGCACATCACACAGACAGTTCGCCAAAAAACTACTTTAACAAGCTATGCTTCACAGGTTAAGCCCATCTTTCTCACATAAGAACTTGAACACCCAAGCATTCAGTGTAGCATCACTCGCATTGCACAACCAACCACGCTTACCTTTATTCTCCTTGTCAGACAAATACTCACCAACAAGAACCCTTTGATCAGGTGTCAT
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| CDS seq | ATGACACCTGATCAAAGGGTTCTTGTTGGTGAGTATTTGTCTGACAAGGAGAATAAAGGTAAGCGTGGTTGGTTGTGCAATGCGAGTGATGCTACACTGAATGCTTGGGTGTTCAAGTTCTTATCCGCGGCCTCCCCGCCAGTGCTCGCCGCGTTGGCCGCCGCCCAGCCGGCGAACGCGCTCTCGCTGCCCACCTGGGCCGTCCACGTCTCCAGCGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAGGTGCTTGTAGCGCTCCAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAG |
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| Protein seq | MTPDQRVLVGEYLSDKENKGKRGWLCNASDATLNAWVFKFLSAASPPVLAALAAAQPANALSLPTWAVHVSSVPLLGGAMCACTWHFFYNSESLEVLVALQGALTVIGNITMCIAAFRIFKASQESSKSS |
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| Function | Ycf49-like protein [UniProtKB/Swiss-Prot:Q55720] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0053610 | OsLiXu_Ung0053610.01 | ChrUN-Ctg416 | 61487 | 64694 | - | NAM | ||
| CDS seq | ATGACACCTGATCAAAGGGTTCTTGTTGGTGAGTATTTGTCTGACAAGGAGAATAAAGGTAAGCGTGGTTGGTTGTGCAATGCGAGTGATGCTACACTGAATGCTTGGGTGTTCAAGTTCTTATCCGCGGCCTCCCCGCCAGTGCTCGCCGCGTTGGCCGCCGCCCAGCCGGCGAACGCGCTCTCGCTGCCCACCTGGGCCGTCCACGTCTCCAGCGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAGGTGCTTGTAGCGCTCCAAGGTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCATCCCAGGAAAGCTCAAAAAGTTCATAG
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| Protein seq | MTPDQRVLVGEYLSDKENKGKRGWLCNASDATLNAWVFKFLSAASPPVLAALAAAQPANALSLPTWAVHVSSVPLLGGAMCACTWHFFYNSESLEVLVALQGALTVIGNITMCIAAFRIFKASQESSKSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011370 | SBH | 0.553358 | 0.000000 | 5.279267 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017080 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0340800 | SBH | 1.0740515 | 0.2973775 | 6.660497 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016940 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016960 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016800 | SBH | 5.654916 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016710 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017070 | SBH | 1.898031 | 0.000000 | 3.309959 |
