Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0016960 | OGI:09005370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:21273502-21276835 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacaggttaagcccatctttctcacataagaacttgaacaCccaagcattcagtgtagcatcactcgcattgcacaaccaaccacgcttacctttattctccttgtcagacaaatactcaccaacaagaaccctttgatcaggtgtaattgggattgcctctagtttctgccacagaattgcatgtggatcagtaagctgtggcattggtggaggagctgtggtagcaagtgtttctcgaagtgatttcatcgtagtagcgatttcatcattggtctcggcaaagcgactcttgcttttttgtggcttcttagttggtgatttgttgcctcttggactcttctttttacctcgactaccgctggaagagttgtcaacagttgcattcgtggttggagatggcaaagtgtcagaatcctcaccagttggctctttaggttgtgtgtagcagttgaggtcaagcatatctcttgaatcatcgctatctgaaccatcactatcgttcatgcatgtgttttgatccatagccaaagaaccatcggcactagatcccgtgaatagctcctgcatctcattaaagaatctgatgggcttagagagtaggcgtcttgctctatcctgcataaagagcaaacgtgttaaattgctatatgtagttcagattctaaaatgtaacatgcaaacatgtcaattttgtagaaaacttacacatagcgttgccttttcagattctgaaatagtcaccaagaatcttgtatggtcaaatgcgttgccactcttgctcaatgctgctgcaatatacttccaattttttttgtgatacctgtagtgacgatccacttgatcggcagtcacccccataccaaacttcttgtttaaagcatcagcacacaacatgtggtgactcttttttaccttaaaacctgcatgttgttttttcaagtattccatgtaccactctagcatgaattttgtttgatcctcatgccaagtcaaggacctctcacgagaggttggaaaagcatcagccttcgcctttcctttagccattctgttttcattcacaagagacagctcaatacattagttacataatttagagaacaacttaaatctaaggtacagtttgtcctactttatcttcccacatctttttagccgtatcatctcttttctttgcccatgccaaattctcctggtgcatatcagtacggtttcttacactccgtggcagcgctgcataccaagcagcatcgtcatacacatagacatcaggaccgtcctctataatccagttatgaagtgcacaacaagccatcacaattttcacttgtgttttcaaaggaaaaaatggttggcatttaaatattctgaagcggttcttcaaggcaccaaatgctcgctcaatagttgttctaagagaggaatgccgaaggttgaataactcctttgggttctctggttctctagcgcccttatattcttttaggtgatatcgggtacctcggtatgggggtaatacaccaggtctagctgcatatccggcatcagctaggaaatatttacctacatatttttttgtgcatattaattagctaagaacagaattgaagtttcagatatggagctattaggatatgatgtgaataatcctaccttctggtattttaaggccattagtacgtgatagagcatcttgaagcacataagaatcatgggcagaaccttcccatccagcaagaacatataagaaccttaagtcaaaatcaactgctgctagcacattgtgtgatggaaatttctttctacccctaaaccggtcttgcatatgcataggtacacatgctggaatatgtgtaccatccagggctCctatgcatccctacgaaaatagacaattttttttagaacaaatataggtgaatatggccctaaactcttagggtatacttaaacagggattatcaattttgatgtacctgaaagtaggggtgaaatctgccatgagagcttgttatcttttgatgtgtgtcaatggatttgatgcatacaaggtcacgggcaaggatatagagggcatctaaaacaagattgaaatacctactaacagtctcatccgatctcatgaattcaaatgcaattggtctatttgaccaattgtgacccacaacgtgaataaacatagcgacttgttcctctattgtgacatgaaaagtctcctctagcaggacacgtgatctaagctcagcacacaacttatggaagacaacttccctcatacgaagctcacttatgcaatgtgcttcggttccatggtataaatggtctagacgtcttaatctttcaacatctctatcaagcatgggagcatatgtaatggctcTTttcctttttcttctattaatcctataccaatacatggctaggcacaccagaattccagcaatcaatcttctcctccatatataatggcagtagtccaagtaatactgtaaatacaattttctttgacccatataaaacatattttcagaaaaagtatggaatcagtaagagaaaaaaactgatagttgatatctatctattaaggtcactgtaaatactgtaagcacactgttgctggttatcagtatcagtaagagaaaaaaaactgatagttaatatactgtaagcacactttgaatatcttgaaagcaacaacatgatatggatatctatctattaagctcactgtttatcatatattagtcaagaatgaaatctatctattactgcatacatatgcataaaactaatagtgaagaactagtatatattagttcagatccggtccacattctagtgccacacgattattcaatcaccatcaattatacaaggatgcatatgtgccttagtgctaatcaggcaaaaaaaaaaggcacagctaaagacttcagaaatcaacacgaaatccatcagatcgatgtcagtggaaaagagagaatattaccttcctttccggctgcgcggaagcgtcgtcgccgcacacaaacggcagctccttccgacccgcacagacgcgttgctgcacacaaagaacttgatgaagacgcagctgctcctcaaacacagaagttcttgtgtccctttaatcagatctacacatgaaaaaattcagagatttaatagatgtaatggatctaggagaggaagaaggaaagaacgcacaatgtacaggagaaggtagctaatcacaagatcaacgagcatggccgcgggagaggatctgccatggaaacgaggtggagagcagccatggatgggagatgaggagagatgggggtggtgatat
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| CDS seq | atggctaaaggaaaggcgaaggctgatgcttttccaacctctcgtgagaggtccttgacttggcatgaggatcaaacaaaattcatgctagagtggtacatggaatacttgaaaaaacaacatgcaggttttaaggtaaaaaagagtcaccacatgttgtgtgctgatgctttaaacaagaagtttggtatgggggtgactgccgatcaagtggatcgtcactacaggtatcacaaaaaaaattggaagtatattgcagcagcattgagcaagagtggcaacgcatttgaccatacaagattcttggtgactatttcagaatctgaaaaggcaacgctatgtgatagagcaagacgcctactctctaagcccatcagattctttaatgagatgcaggagctattcacgggatctagtgccgatggttctttggctatggatcaaaacacatgcatgaacgatagtgatggttcagatagcgatgattcaagagatatgcttgacctcaactgctacacacaacctaaagagccaactggtgaggattctgacactttgccatctccaaccacgaatgcaactgttgacaactcttccagcggtagtcgaggtaaaaagaagagtccaagaggcaacaaatcaccaactaagaagccacaaaaaagcaagagtcgctttgccgagaccaatgatgaaatcgctactacgatgaaatcacttcgagaaacacttgctaccacagctcctccaccaatgccacagcttactgatccacatgcaattctgtggcagaaactagaggcaatcccaattacacctgatcaaagggttcttgttggtgagtatttgtctgacaaggagaataaaggtaagcgtggttggttgtgcaatgcgagtgatgctacactgaatgcttggGtgttcaagttcttatgtgagaaagatgggcttaacctgtga
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| Protein seq | MAKGKAKADAFPTSRERSLTWHEDQTKFMLEWYMEYLKKQHAGFKVKKSHHMLCADALNKKFGMGVTADQVDRHYRYHKKNWKYIAAALSKSGNAFDHTRFLVTISESEKATLCDRARRLLSKPIRFFNEMQELFTGSSADGSLAMDQNTCMNDSDGSDSDDSRDMLDLNCYTQPKEPTGEDSDTLPSPTTNATVDNSSSGSRGKKKSPRGNKSPTKKPQKSKSRFAETNDEIATTMKSLRETLATTAPPPMPQLTDPHAILWQKLEAIPITPDQRVLVGEYLSDKENKGKRGWLCNASDATLNAWVFKFLCEKDGLNL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0016960 | OsLima_09g0016960.02 | Chr09 | 21273502 | 21274576 | - | NAM | ||
| CDS seq | atggctaaaggaaaggcgaaggctgatgcttttccaacctctcgtgagaggtccttgacttggcatgaggatcaaacaaaattcatgctagagtggtacatggaatacttgaaaaaacaacatgcaggttttaaggtaaaaaagagtcaccacatgttgtgtgctgatgctttaaacaagaagtttggtatgggggtgactgccgatcaagtggatcgtcactacaggtatcacaaaaaaaattggaagtatattgcagcagcattgagcaagagtggcaacgcatttgaccatacaagattcttggtgactatttcagaatctgaaaaggcaacgctatgtgatagagcaagacgcctactctctaagcccatcagattctttaatgagatgcaggagctattcacgggatctagtgccgatggttctttggctatggatcaaaacacatgcatgaacgatagtgatggttcagatagcgatgattcaagagatatgcttgacctcaactgctacacacaacctaaagagccaactggtgaggattctgacactttgccatctccaaccacgaatgcaactgttgacaactcttccagcggtagtcgaggtaaaaagaagagtccaagaggcaacaaatcaccaactaagaagccacaaaaaagcaagagtcgctttgccgagaccaatgatgaaatcgctactacgatgaaatcacttcgagaaacacttgctaccacagctcctccaccaatgccacagcttactgatccacatgcaattctgtggcagaaactagaggcaatcccaattacacctgatcaaagggttcttgttggtgagtatttgtctgacaaggagaataaaggtaagcgtggttggttgtgcaatgcgagtgatgctacactgaatgcttggGtgttcaagttcttatgtgagaaagatgggcttaacctgtga
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| Protein seq | MAKGKAKADAFPTSRERSLTWHEDQTKFMLEWYMEYLKKQHAGFKVKKSHHMLCADALNKKFGMGVTADQVDRHYRYHKKNWKYIAAALSKSGNAFDHTRFLVTISESEKATLCDRARRLLSKPIRFFNEMQELFTGSSADGSLAMDQNTCMNDSDGSDSDDSRDMLDLNCYTQPKEPTGEDSDTLPSPTTNATVDNSSSGSRGKKKSPRGNKSPTKKPQKSKSRFAETNDEIATTMKSLRETLATTAPPPMPQLTDPHAILWQKLEAIPITPDQRVLVGEYLSDKENKGKRGWLCNASDATLNAWVFKFLCEKDGLNL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0016960 | OsLima_09g0016960.01 | Chr09 | 21273502 | 21276835 | - | NAM | ||
| CDS seq | atggctaaaggaaaggcgaaggctgatgcttttccaacctctcgtgagaggtccttgacttggcatgaggatcaaacaaaattcatgctagagtggtacatggaatacttgaaaaaacaacatgcaggttttaaggtaaaaaagagtcaccacatgttgtgtgctgatgctttaaacaagaagtttggtatgggggtgactgccgatcaagtggatcgtcactacaggtatcacaaaaaaaattggaagtatattgcagcagcattgagcaagagtggcaacgcatttgaccatacaagattcttggtgactatttcagaatctgaaaaggcaacgctatgtgatagagcaagacgcctactctctaagcccatcagattctttaatgagatgcaggagctattcacgggatctagtgccgatggttctttggctatggatcaaaacacatgcatgaacgatagtgatggttcagatagcgatgattcaagagatatgcttgacctcaactgctacacacaacctaaagagccaactggtgaggattctgacactttgccatctccaaccacgaatgcaactgttgacaactcttccagcggtagtcgaggtaaaaagaagagtccaagaggcaacaaatcaccaactaagaagccacaaaaaagcaagagtcgctttgccgagaccaatgatgaaatcgctactacgatgaaatcacttcgagaaacacttgctaccacagctcctccaccaatgccacagcttactgatccacatgcaattctgtggcagaaactagaggcaatcccaattacacctgatcaaagggttcttgttggtgagtatttgtctgacaaggagaataaaggtaagcgtggttggttgtgcaatgcgagtgatgctacactgaatgcttggGtgttcaagttcttatgtgagaaagatgggcttaacctgtga
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| Protein seq | MAKGKAKADAFPTSRERSLTWHEDQTKFMLEWYMEYLKKQHAGFKVKKSHHMLCADALNKKFGMGVTADQVDRHYRYHKKNWKYIAAALSKSGNAFDHTRFLVTISESEKATLCDRARRLLSKPIRFFNEMQELFTGSSADGSLAMDQNTCMNDSDGSDSDDSRDMLDLNCYTQPKEPTGEDSDTLPSPTTNATVDNSSSGSRGKKKSPRGNKSPTKKPQKSKSRFAETNDEIATTMKSLRETLATTAPPPMPQLTDPHAILWQKLEAIPITPDQRVLVGEYLSDKENKGKRGWLCNASDATLNAWVFKFLCEKDGLNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0226000 | SBH | 1.628796 | 2.489446 | 5.686174 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25170 | RBH | 0.0 | 0.0 | 0.158759 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0226000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0002090 | SBH | 0.0 | 3.967942 | 2.001586 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0002080 | SBH | 0.0 | 5.312442 | 1.908455 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0002150 | SBH | 0.0 | 61.357327 | 6.828699 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0012270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017090 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0340800 | RBH | 1.0740515 | 0.2973775 | 6.660497 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016940 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0252100 | SBH | 0.047881 | 0 | 0.005644 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011150 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G012610 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0012390 | SBH | 0.0 | 0.0 | 0.0 |
