Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0017070 | OGI:04057110 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:20782703-20785192 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggctatagcaggtgaggtaaattttcttcttatctgagtaaatacactcattgtctagAaaaaaatctgagtcaatacacaaatttcagggtggttttagctggcatttgtagaattgatacatacAaaaaaaaaatggctctttcggtctgatAaaaaatcatctttctgaagtagctgcaagccgtcagcagcttttatcttctgccttcatagcatctaccgtttgccatttcatgtcaggtgtacctgccattctcaagaagcttccacctaatagatagatgttgcaactctaagtaatccgttttcagaagtatggtatattttaccacaataagttactagtacattagtgtatgcatgctacaggtccctctatgaactttttgagctttcctgggatgctttgaagatgcgaaatgcagctatgcacattgtaatgttaccaatcactgttagagcaccttggagcgctacaagcacctgcagatagttttcaaaaaaaaaaaaaaagaaccacgaagagaattaacttgagtagAaaaaaaatatcgaaaacactagttgaattatactattgtatgtttttacaataagagagtatctcgataatactaaaaaaaatcgcatgcatagacttgcacaaaaagaactgtggagaacagttccactgtctaatcatctgtgtttcatgtgcattgatttaaaggcaaatagacactagaccaattgaaatgtcaggataggccaagtaatgaagtgatatttgacaagtgtgaacagttgcaaaacactgggaaggaaatgatgataatgttgatgaacggaaaaaaaataggaagcattagtgtttcaactgtagggatatattttacctcaagagactccgaattatagaagaaatgccacgtgcaagcgcacatcgctccaccaagaagtggaacctattatacaaaGaaaaaaaatgcaaatctgagtagtcaacaatcataaagtaagctgttgaaaaaatcagtcgaaaacttgtgaacaactgcaactaccatcagcaaagaccttactatatagtagtagtagtagtatagataatagaagccacacataagtaaagagggggtacttacagattagattcactgaaaacaacacaagatttcttgtgatgaaaacatagcataaataaatatgagacattctcctcccactctctgaatcttactactaatacacaggagtacatgaagctactaggttgtacaaaaattaacattagccaacacaaattttatcagcaaatgcatcatcatttaatccaaatttattacactcaccattcctcaagagaggtctttccaacccttgagccccgtcctctccccgtagctccAaaccagcatcatggccgtcaccctataaaatccagacagaacaggcgatactgatagtagtagtatgatgcacagatacgcgatactggtacggcgatacggatatgtcgatactttgatacgggaattttcaaaaacatcaatgcgccgatacggcgagtgtatatatatttcataaaatgaaaaatatagaaacactttaacaagggtgaaataatccttacactgttcattgcatgcttagcatttttaatacctttgctggttgataagctcaatcgtgggacccacctggccaactcaattaaatcgctacctttctaatcagaaagacacaaggtcacaagcaaatgctgtagtcccggccggctgcttctctcccagtcctcatcaactagctcctcctcccggcgtttcctcctaggccagcgcctctgtggcttctcctctcccctcccccgagccctagtcagacggccGggcgacgatgaagcatgaagccgtcgtcgtctcgatctgatggagacggccatggctgacggatggatgctCcccccatccgtggttgctgctagcctgctactacccactccatggtgtattcgtaactggtgaggagccaggactgaggaggtccttgtctcctcgatacgtatcAaaccaaagtatctaatccgtatccatggagtatcggtaattattttgatttattttcgctcttaaataatcgatacttcgtcgataccgtatcgatgacgtatcccgcatatcgccgtatccgatacgtatcccatacgggaacggctgtcgagagccgtatctgtgcatcatactctgatactactcccctcatcttttgcagccacggaagcaagaggtagttaggtagggtagtagcagtaccactcggcgacgctggagacgtggacggcccaggtgggcagcgagagcgcgttcgccggctgggcggcggccagcgcggcgagcactggcggggaggccgcggctactcgtcggggccgcggcggcggcggtggcgcaggcgaccgcggcgatgaggcggagatgcgccattggtgggatggggagcttggcgtt
More
|
||||||||||
| CDS seq | atggcgcatctccgcctcatcgccgcggtcgcctgcgccaccgccgccgccgcggccccgacgagtagccgcggcctccccgccagtgctcgccgcgctggccgccgcccagccggcgaacgcgctctcgctgcccacctgggccgtccacgtctccagcgtcgccgagtggttccacttcttggtggagcgatgtgcgcttgcacgtggcatttcttctataattcggagtctcttgaggtgcttgtagcgctccaaggtgctctaacagtgattggtaacattacaatgtgcatagctgcatttcgcatcttcaaagcatcccaggaaagctcaaaaagttcatag |
||||||||||
| Protein seq | MAHLRLIAAVACATAAAAAPTSSRGLPASARRAGRRPAGERALAAHLGRPRLQRRRVVPLLGGAMCACTWHFFYNSESLEVLVALQGALTVIGNITMCIAAFRIFKASQESSKSS |
||||||||||
| Function | Ycf49-like protein [UniProtKB/Swiss-Prot:Q55720] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0017070 | OsNaBo_09g0017070.01 | Chr09 | 20783082 | 20785168 | - | NAM | ||
| CDS seq | atggcgcatctccgcctcatcgccgcggtcgcctgcgccaccgccgccgccgcggccccgacgagtagccgcggcctccccgccagtgctcgccgcgctggccgccgcccagccggcgaacgcgctctcgctgcccacctgggccgtccacgtctccagcgtcgccgagtggttccacttcttggtggagcgatgtgcgcttgcacgtggcatttcttctataattcggagtctcttgaggtgcttgtagcgctccaaggtgctctaacagtgattggtaacattacaatgtgcatagctgcatttcgcatcttcaaagcatcccaggaaagctcaaaaagttcatag
More
|
|||||||
| Protein seq | MAHLRLIAAVACATAAAAAPTSSRGLPASARRAGRRPAGERALAAHLGRPRLQRRRVVPLLGGAMCACTWHFFYNSESLEVLVALQGALTVIGNITMCIAAFRIFKASQESSKSS |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0017070 | OsNaBo_09g0017070.02 | Chr09 | 20782703 | 20785192 | - | IsoSeq | ||
| CDS seq | atgaacagtgtaaggattatttcacccttgttaaagtgtttctatatttttcattttatgaaatatatatacactcgccgtatcggcgcattgatgtttttgaaaattcccgtatcaaagtatcgacatatccgtatcgccgtaccagtatcgcgtatctgtgcatcatactactactatcagtatcgcctgttctgtctggattttata
More
|
|||||||
| Protein seq | MNSVRIISPLLKCFYIFHFMKYIYTRRIGALMFLKIPVSKYRHIRIAVPVSRICASYYYYQYRLFCLDFI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr09 | 20783650 | 20784998 | - | OsNaBo_09g0017070.02 | OsNaBo_09g0017070.01,OsNaBo_09g0017070.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.898031 | 0.000000 | 3.309959 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016970 | RBH | 0.0 | 0.0 | 0.890014 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017080 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0340800 | SBH | 1.0740515 | 0.2973775 | 6.660497 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0328900 | RBH | 2.046934 | 0.284755 | 2.400694 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016800 | RBH | 5.654916 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017230 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
