Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0050920 | OGI:99050760 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg389:196201-202392 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagaagacgaatatcacatatatttcagatgatcagtacatagacacaggagaaaaccacaaaatttcttcagaacaccatggtgccgaacaattcagatcgggtttaaatctcagaagttttcctactggaggtaggaattgttatactctttatcccgccataaaaggtcagaagtatcttataagaggaatgttcatgcatgggaattatgacaacaaaagccagaatctcgttagctcaccactgctcttcgatatccgcatcggactgaacttctggaaccaggtcaacattagcagtgcaaccatgacttacacgtctgaggctatagttcttgccactgtaaattcaatatcagtttgcttgcttgataatggaaaaggaactcctttcatatcatcgttagaaatgaggccaatgaagagttcaaattatcccgcagcaacaccaaatcatcctcttttgctccaggatcgacgaagcatgggtgcaaatagcacaattaggtgatccttctttaccgactaaaaattttctgcacacccaataatttattctatttctacataaacattgtgtaatttctgccaccaggtatcccgatgatccctatgaccgtttgtggtggccatcacagaatacatctgagtggataaagatttccacaacaagcatggtcaggcgctaccctgatgatgtatatgaggtgccagcttcagtcctgaagacggccgccacgacatcatccaactctactgccctgaatttcttgtggctggctccagccagctgggctgcggctcctggatacttgcttggcttacacttcactgacttccagcaggagcagctgcgagagttccacatatactacaatggcgaatcctttgttcctgatggtaagtcatacagcccaccttacctcctcgcgaactactggaatgacagcagtccaactgtatcggacaacggcctatcatacaaaatctccattgtcgctaccaacgcatctgtgctgccacccatgctcaacgccatcgaagtatactaccaagtccaacaggatgaaaagatgacctcctcagaagatggtatgcatgtgcccatgtttttgtttgaattgaaaccactagactagtttctaattattagcaaggccatgcaaattgttgcaactataaatatacgaaatgtgcacaacttgtgtattaacttaaacaatgagtgaatacatactccctccgtttcatatttctaagtcaccgacttttttcctagccaaacttctttaggTttgatcaaatttatacaaaaaattaacaaaatatataaaaccaaatcaatttaattaaatgtaacattgaatataTtttgataatatgaatgttttctgttggaaatgttactataTttttctataaagttggtcaaacttaaaaaagtttgactacgaaaaaaatcaaaacaactatgaaacagagagggagtacatgttttgcatcaaaggatcatttccctcattccctcttcttgtttaagaagtattgctttttttctcttgctggacagtttttttaacatcagtttatccatcgtttgctcttttgattttaactactataccttattaaagaggaaaataacaaaacttaaaacttcaaaagatttatgcatcatacatgagcatgtcctgtttgggatggacgaactgcaaagataatattgcacatcacacatatagaactcagcaaagattagtgcattgcatatgtacatgccataaaccacatactaattcattacttcccactatcgattttcatattttgtttagttgatgctatgatgactataaaaaTtgagtaccaagtgaagaagaattggatgggtgacccatgtttaccagAaaagtatacatggaatggcttgaaatgtagaggccaaggagatacatcaagaattatatccttgtaagtggcagtgtttgagtgatttatgtcctttatgcacttattattagattggtagctcttttaTtttaaatactctaaataTttggcagagacttgtctggtagtgatttgcaaggtgcaatatctgaaaaattttccatgctcagatcacttgaatacttgtgagtatagtcatctacaaaactatCcagcaatgtgttaaacattatcagaatttcacagttttctattttcaggaacttgtcgcacaatggtttaactggattagtacctgaatccttgacaaacttaccaaatatccttgttttgtacgtgtgaatgtgatcctatcatttcagggaaaaaacactcagatgtgcagatcaataagacaattcttttgttcatgttgtttatgcagagatctatcaggAaaccatctaaatggtacattccctgaaggactatgcaaaaatcgagcactcaaattgaggtatcatggtctttaatttttctagttcactataacattattgaaatcctggaatatcaacatgtaatgtgaaataacaatggccaaactaatgcaacttttctgcaaaagaatcataagcagtaatgaacacacttgtcatgatatgtaggtctatatcagttcaatgatgaatcatgtacttggactgtttttctatcaaaagaactatgtaatctaactgatcggaaaccttagaaattacactgtgtaatctttcaggagaaaaagtagactaaaatgttggcacaatgcataataaaaaatggtagcagtgcatatatgcgaaaatttattattaagaaaagtagTtttttctcatttaggtttttaatatttaattagaaatcaatctacagaataatacacaccaaatcaaggtgtagttctttCccatctgggcctattaatatgagagttttcagatcttaagagtgaattcaatgccacaaatttcaataaactgttattatccattggatcaaaccagacagatatgtttttcttggtttaaggtatgacactgcaaatggagatccatgcagttcaagatcatcgaagaagAaaaagaaagcagtcctagcaattgccatagtggttccagtggtgattgtatctgctatactgatgtttattttctgcaaaaagcaaagtatgcatcTtctctgtaaattcctaaacatacatctatatcagtaactgtataatactatcatcattcgaaaaagttattttagaaagttaggacctttagtgtttataatacagtacttgttaccgttttggttaatgtgatccgatttgggtttcatctctacccctacccaacttgattgggactaaaggctgattcttttgtgtcaggatagtatatcccactttctgcgggttacttcaacAatgtttacttctagtcagtacatgagttcctaaacaatgcatacttccctacaggcacaatgaaaatatatctttccatggaaagatgttcttttcttttatgaaacagtgcattctatttcacgaacttccaccttttcacctagcatttaacagttgatctttaatgagttcaatccattggctttgatttttagttgacatggcattatgaggttagtcatattcaaagaaagtttcagtaaacatggatttgtacaggcaaattatgttaggaactaggaattatatcagaagaaattcagcatattgaacagaacagagtagacaaaaaaaggacatttttcaaaaattttccaattatatagaatacttgatttcttaagctattgctgagtgttcttattatgggtgcaggcattgtgaagtctagaggtcaagaacattgtggagatcatgtgcatattccagacaaccgtgagttcacatatgatgagttagcaaaaattacaaacaatttctgaacattcataggtgaaggaggatttgggcctgttttccatggccagttaaaagatggcactcagttagccattaagatgtgttctccaacatcgacaccagggaagggaatgccagaatttttagctgaggtactagatttgattgatgaaaatttaagacggatttcaacattagactattagatgatcttgaacttaacaaagtttaccttttaaaagattcaatataaaataatattgttcttgtacaatgctatgttgtcaagtttgtgttcagaaacatagtactctgaaggtattgtcttcctcttcccttctgtaggttgagagcttaacaactgtgcaccacaggtatctggttttattggttggatactgcactgacaaggatcatttagctcttgtttatgagtatatgcctaacgggagtctttatgatcatctgagaggtatgtgactatgcacactgacgaacattaaaatcccatattatatctgtgcaaagaaaacgaatttcctctacttggttatcaacttattatgtacctcaaagagaacattagtctttatatgattaatcatcattgttgtaagcaaaaaaggccaagtgaatcaagatgcaattattaatgcatttcaagcaatataaaaaagattacattgattccaaaaaagagccttttaaagtccttgagaaagtattgtactaccgtgagatactactgttcatagtgttaattatgacatttctacattaggacttaggaaggtagcaggaggtaacaaaaattgacaacatgaagtgcggcaccttgtgttacctcgttgaaataaggtggaagagctagagaggagttggacagtgggtcagtagtgttgtgttttTTGtTtttttttttttgtttttggcttggtgaaccctgcttgaacatcagttttttatccaaatgtgaattatttgttactatcatttctcatgtggatagcacataattcacaaggtgccactgaaaagctttcattttgcacaagcatcttatctttacataacaacacaattatttatatcctgatccatcagcaacaTtttttcatggtcatttaggaaaaaatgctattattcagaaattaagttggcaacatcgagcacgaattgcacttgaagctgctcaaggtatggttttgagtgtaccaaaccattttcatcagttttcctactcttctattacatgttcaaattttaatatatcatatcctatggcacaggtctggactacttgcacacaggatgtgtgctgcctatagttcacagagatgttaagtcacacaacattcttctaggatgtgacctgaatgcaaagatatctgattttggactgtcaaagtcatacctgcatgttgcacagagtcacataacagcaactgctgctggcactccaggctacatcgacccagagtttgttcttatatgcattcaaagcttcatttctattaaaaaaaccacaatgcaaattctaagaatactgcctgcAaaaaatgctaataaataccagagaacatcatttgtagtaacactagatgcaatcaataagactaactgtgtgttctgttccaactatttcaggtactgtcgtagtggaagacttaccgttagcagtgatgtctacagctttggagtagttctgctagagattgtgacaggtgagcctcccgtcatacctacaaccggacatattgtgcagcgcataaaggagaaggttaatatgggaaatattgaagcaattgctgatccacgacttcacgatgagtttgatgttagttcaatttggaaggttgttgacacagcactgatgtgtacaaaggaggcatctagtgaaaggccaacgatgagtatagtagtagcacagctaaaggatgtattagcgttggaacaagcccgtttaaggtacagcatcagtgacattagccaaggtggtgccaatgctgaattgtcatactccttgccaacgccaagataattaagctaagaaccattaaaaattaactaataataaaaaaaacagcaatgaacaatggacatgtatgtctctccactggggtttggtacttaaggattacaatcgaTttctcaatcctatgtaaaattccgaatttctagcattgttctgtaatgtgtatattaagaggaatatttagaaatcaaaaatagcaagcatgtctcatcaactatatcccatgattttacttttaaaagcttatgtaatctggagaaatatgcc
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| CDS seq | atgttcatgcatgggaattatgacaacaaaagccagaatctcgttagctcaccactgctcttcgatatccgcatcggactgaacttctggaaccaggtcaacattagcagtgcaaccatgacttacacgtctgaggctatagttcttgccactgtaaattcaatatcagtttgcttgcttgataatggaaaaggaactcctttcatatcatcgttagaaatgaggccaatgaagagttcaaattatcccgcagcaacaccaaatcatcctcttttgctccaggatcgacgaagcatgggtgcaaatagcacaattaggtatcccgatgatccctatgaccgtttgtggtggccatcacagaatacatctgagtggataaagatttccacaacaagcatggtcaggcgctaccctgatgatgtatatgaggtgccagcttcagtcctgaagacggccgccacgacatcatccaactctactgccctgaatttcttgtggctggctccagccagctgggctgcggctcctggatacttgcttggcttacacttcactgacttccagcaggagcagctgcgagagttccacatatactacaatggcgaatcctttgttcctgatggtaagtcatacagcccaccttacctcctcgcgaactactggaatgacagcagtccaactgtatcggacaacggcctatcatacaaaatctccattgtcgctaccaacgcatctgtgctgccacccatgctcaacgccatcgaagtatactaccaagtccaacaggatgaaaagatgacctcctcagaagatgttgatgctatgatgactataaaaaTtgagtaccaagtgaagaagaattggatgggtgacccatgtttaccagAaaagtatacatggaatggcttgaaatgtagaggccaaggagatacatcaagaattatatccttagacttgtctggtagtgatttgcaaggtgcaatatctgaaaaattttccatgctcagatcacttgaatacttagatctatcaggAaaccatctaaatggtacattccctgaaggactatgcaaaaatcgagcactcaaattgaggtatgacactgcaaatggagatccatgcagttcaagatcatcgaagaagAaaaagaaagcagtcctagcaattgccatagtggttccagtggtgattgtatctgctatactgatgtttattttctgcaaaaagcaaagcattgtgaagtctagaggtcaagaacattgtggagatcatgtgcatattccagacaaccgtgaaggaggatttgggcctgttttccatggccagttaaaagatggcactcagttagccattaagatgtgttctccaacatcgacaccagggaagggaatgccagaatttttagctgaggttgagagcttaacaactgtgcaccacaggtatctggttttattggttggatactgcactgacaaggatcatttagctcttgtttatgagtatatgcctaacgggagtctttatgatcatctgagaggaaaaaatgctattattcagaaattaagttggcaacatcgagcacgaattgcacttgaagctgctcaaggtctggactacttgcacacaggatgtgtgctgcctatagttcacagagatgttaagtcacacaacattcttctaggatgtgacctgaatgcaaagatatctgattttggactgtcaaagtcatacctgcatgttgcacagagtcacataacagcaactgctgctggcactccaggctacatcgacccagagtactgtcgtagtggaagacttaccgttagcagtgatgtctacagctttggagtagttctgctagagattgtgacaggtgagcctcccgtcatacctacaaccggacatattgtgcagcgcataaaggagaaggttaatatgggaaatattgaagcaattgctgatccacgacttcacgatgagtttgatgttagttcaatttggaaggttgttgacacagcactgatgtgtacaaaggaggcatctagtgaaaggccaacgatgagtatagtagtagcacagctaaaggatgtattagcgttggaacaagcccgtttaaggtacagcatcagtgacattagccaaggtggtgccaatgctgaattgtcatactccttgccaacgccaagataa
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| Protein seq | MFMHGNYDNKSQNLVSSPLLFDIRIGLNFWNQVNISSATMTYTSEAIVLATVNSISVCLLDNGKGTPFISSLEMRPMKSSNYPAATPNHPLLLQDRRSMGANSTIRYPDDPYDRLWWPSQNTSEWIKISTTSMVRRYPDDVYEVPASVLKTAATTSSNSTALNFLWLAPASWAAAPGYLLGLHFTDFQQEQLREFHIYYNGESFVPDGKSYSPPYLLANYWNDSSPTVSDNGLSYKISIVATNASVLPPMLNAIEVYYQVQQDEKMTSSEDVDAMMTIKIEYQVKKNWMGDPCLPEKYTWNGLKCRGQGDTSRIISLDLSGSDLQGAISEKFSMLRSLEYLDLSGNHLNGTFPEGLCKNRALKLRYDTANGDPCSSRSSKKKKKAVLAIAIVVPVVIVSAILMFIFCKKQSIVKSRGQEHCGDHVHIPDNREGGFGPVFHGQLKDGTQLAIKMCSPTSTPGKGMPEFLAEVESLTTVHHRYLVLLVGYCTDKDHLALVYEYMPNGSLYDHLRGKNAIIQKLSWQHRARIALEAAQGLDYLHTGCVLPIVHRDVKSHNILLGCDLNAKISDFGLSKSYLHVAQSHITATAAGTPGYIDPEYCRSGRLTVSSDVYSFGVVLLEIVTGEPPVIPTTGHIVQRIKEKVNMGNIEAIADPRLHDEFDVSSIWKVVDTALMCTKEASSERPTMSIVVAQLKDVLALEQARLRYSISDISQGGANAELSYSLPTPR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g51860 [UniProtKB/Swiss-Prot:C0LGG4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0050920 | OsLiXu_Ung0050920.01 | ChrUN-Ctg389 | 196201 | 202392 | + | NAM | ||
| CDS seq | atgttcatgcatgggaattatgacaacaaaagccagaatctcgttagctcaccactgctcttcgatatccgcatcggactgaacttctggaaccaggtcaacattagcagtgcaaccatgacttacacgtctgaggctatagttcttgccactgtaaattcaatatcagtttgcttgcttgataatggaaaaggaactcctttcatatcatcgttagaaatgaggccaatgaagagttcaaattatcccgcagcaacaccaaatcatcctcttttgctccaggatcgacgaagcatgggtgcaaatagcacaattaggtatcccgatgatccctatgaccgtttgtggtggccatcacagaatacatctgagtggataaagatttccacaacaagcatggtcaggcgctaccctgatgatgtatatgaggtgccagcttcagtcctgaagacggccgccacgacatcatccaactctactgccctgaatttcttgtggctggctccagccagctgggctgcggctcctggatacttgcttggcttacacttcactgacttccagcaggagcagctgcgagagttccacatatactacaatggcgaatcctttgttcctgatggtaagtcatacagcccaccttacctcctcgcgaactactggaatgacagcagtccaactgtatcggacaacggcctatcatacaaaatctccattgtcgctaccaacgcatctgtgctgccacccatgctcaacgccatcgaagtatactaccaagtccaacaggatgaaaagatgacctcctcagaagatgttgatgctatgatgactataaaaaTtgagtaccaagtgaagaagaattggatgggtgacccatgtttaccagAaaagtatacatggaatggcttgaaatgtagaggccaaggagatacatcaagaattatatccttagacttgtctggtagtgatttgcaaggtgcaatatctgaaaaattttccatgctcagatcacttgaatacttagatctatcaggAaaccatctaaatggtacattccctgaaggactatgcaaaaatcgagcactcaaattgaggtatgacactgcaaatggagatccatgcagttcaagatcatcgaagaagAaaaagaaagcagtcctagcaattgccatagtggttccagtggtgattgtatctgctatactgatgtttattttctgcaaaaagcaaagcattgtgaagtctagaggtcaagaacattgtggagatcatgtgcatattccagacaaccgtgaaggaggatttgggcctgttttccatggccagttaaaagatggcactcagttagccattaagatgtgttctccaacatcgacaccagggaagggaatgccagaatttttagctgaggttgagagcttaacaactgtgcaccacaggtatctggttttattggttggatactgcactgacaaggatcatttagctcttgtttatgagtatatgcctaacgggagtctttatgatcatctgagaggaaaaaatgctattattcagaaattaagttggcaacatcgagcacgaattgcacttgaagctgctcaaggtctggactacttgcacacaggatgtgtgctgcctatagttcacagagatgttaagtcacacaacattcttctaggatgtgacctgaatgcaaagatatctgattttggactgtcaaagtcatacctgcatgttgcacagagtcacataacagcaactgctgctggcactccaggctacatcgacccagagtactgtcgtagtggaagacttaccgttagcagtgatgtctacagctttggagtagttctgctagagattgtgacaggtgagcctcccgtcatacctacaaccggacatattgtgcagcgcataaaggagaaggttaatatgggaaatattgaagcaattgctgatccacgacttcacgatgagtttgatgttagttcaatttggaaggttgttgacacagcactgatgtgtacaaaggaggcatctagtgaaaggccaacgatgagtatagtagtagcacagctaaaggatgtattagcgttggaacaagcccgtttaaggtacagcatcagtgacattagccaaggtggtgccaatgctgaattgtcatactccttgccaacgccaagataa
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| Protein seq | MFMHGNYDNKSQNLVSSPLLFDIRIGLNFWNQVNISSATMTYTSEAIVLATVNSISVCLLDNGKGTPFISSLEMRPMKSSNYPAATPNHPLLLQDRRSMGANSTIRYPDDPYDRLWWPSQNTSEWIKISTTSMVRRYPDDVYEVPASVLKTAATTSSNSTALNFLWLAPASWAAAPGYLLGLHFTDFQQEQLREFHIYYNGESFVPDGKSYSPPYLLANYWNDSSPTVSDNGLSYKISIVATNASVLPPMLNAIEVYYQVQQDEKMTSSEDVDAMMTIKIEYQVKKNWMGDPCLPEKYTWNGLKCRGQGDTSRIISLDLSGSDLQGAISEKFSMLRSLEYLDLSGNHLNGTFPEGLCKNRALKLRYDTANGDPCSSRSSKKKKKAVLAIAIVVPVVIVSAILMFIFCKKQSIVKSRGQEHCGDHVHIPDNREGGFGPVFHGQLKDGTQLAIKMCSPTSTPGKGMPEFLAEVESLTTVHHRYLVLLVGYCTDKDHLALVYEYMPNGSLYDHLRGKNAIIQKLSWQHRARIALEAAQGLDYLHTGCVLPIVHRDVKSHNILLGCDLNAKISDFGLSKSYLHVAQSHITATAAGTPGYIDPEYCRSGRLTVSSDVYSFGVVLLEIVTGEPPVIPTTGHIVQRIKEKVNMGNIEAIADPRLHDEFDVSSIWKVVDTALMCTKEASSERPTMSIVVAQLKDVLALEQARLRYSISDISQGGANAELSYSLPTPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0355400 | SBH | 8.814496 | 8.050460 | 5.618421 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g18594 | SBH | 5.897170 | 5.406943 | 1.445080 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0355400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007050 | SBH | 0.654087 | 0.0 | 3.215554 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007050 | SBH | 0.884784 | 0.0 | 3.090161 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007260 | SBH | 0.469337 | 1.515820 | 3.716561 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007230 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007310 | SBH | 6.471702 | 2.985442 | 1.707986 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0199300 | SBH | 0.4295035 | 1.904256 | 1.9694425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007320 | SBH | 0.013650 | 0.238977 | 0.105249 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0176600 | SBH | 2.5580595 | 32.6664675 | 6.983884 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007260 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007110 | SBH | 0.142830 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007010 | SBH | 0.0 | 18.956060 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007010 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006990 | SBH | 0.096361 | 0.453330 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007620 | SBH | 0.057655 | 0.738811 | 0.451217 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007420 | SBH | 0.0 | 2.478537 | 0.366360 |
