Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0050210 | OGI:09018720 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg384:176447-179811 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagaggggcggcaaggcagtttgcaacttgcaagttgaaattgggtttgtgtattcaattgcacacgcaagtcctgctgccgtcctctacggcctgggcataggttgacttcttttttcttttcTtttttttttaaggaatcatatgttgagttgagctcggagcttctcgcaaggaagagaaggcttggcagttgtcaccttgcaatggcgatggcgtcgagcagtggagactggagagccatgttctagctcggccacgcccacgcccacacccacggcagcaaccatggatgccaaactgacggtggcaactagctagcttagctgtggtgattgccagcaactattgagcaatcaagactctaattcttcgatggtggcgtcgggcaacaacacggcagcaccgctggcgaatacgctcccggcggtcattaatcccctactgctagcaacggcctgcactggctctcccaagggactggatcttcttctcaacagcaaggttgcagcaggtgatcaacgagtgctaccattcgcacttggaagccagagatttcgtgacctgatatcagcatatacctccagcgacagatcctccttagcgacgccgacgcagcgaatccctcctcatgacgacccagaagcacttttggcagagatgctgatgctggaaggggtcgcagttgatggggacaccgtgcttcacgcggtggccacctatggcgagaatgatgactttcagaagtgtgctcaaactatgtgcagcaaggcgaggcagctcctcttcaagcaaaacaagaacggtgacacgCccctgcactgcgctgcacgggcaggtaaatcccaaatggtctcttgcctcattgatctggccagaggcggtggcggcgacggcaacagcagcagcagcagcagcaacaatggcgggagtacggacagagtgaaggaactgctggaaacggaaaacgagcttaaggagacggccttgcatgaggctgttcgcattggggataatgctatggtcgagctgctactgcaggagtatcccgagctggccagttttccaaaagacggcacctcacctttgttcttagccatcttgctgcaggagaacatcatcgtggagacgctgtacagtaagagcaacaagaagctttcttactctggacaaaagggacaaaatgctcttcatgctgctgtcctccgaggcacaggtatcaccaaactaccaaccaacaagtacccttccttcaattttggatggttaaaagtttgcaagttttctttaaaaatatacatatttgcttcttcttcttcttctccttctcttctatcttttctttcgcaccggatatttgcgagtaaaattgaagtggcccggcgaaaagtaagatttaactgcaaatttacttatgagatgccgtccacctagagtatatattacgatttgtttttagttatgtacgttaaattcctttttccatattctctgtgtatgctctattcggtgcacatctattagtcctctagaatgtagctacgtgcaagtaccctttttgtgttgagagcaattttgccatctaacatttgttatcttgagttaccacaaaTttttgttaactcgagttagtacctcgagacaccgagatcttatgtccaaaatatgatatctcgagacaccaaatgttggatgataaaaatgctactgtgttatactttataatgaattcctcgatcaataaataagcgctaaacagaagagagtacacgattttcagatgtcactaggaagatactgaaatggaacaagaatcttagcacggaaagggatgagaagggcagtacgccccttcactttgcggcggccaagtatttcgatgttgtgcgaacccagctgggactgatcaggccgttcttcgcggctgcggcgctgagacaatcgcgaggaagcgtgtgctggctcgtcctggatgctaatccggccgcgctgtaccaagccgaccatgacgggttgtacccgatacatgtagcagcctcggtgggcgccgtaggctccatcgccatcttcgtcgacgcgtcgcccagctgcgccggcctgcgcgacgccaagcggaggactttccttcacgttgccgtcgagagagggcagatcgacgtcgccggttatgcttgcagcaacaggctgctgtcatgggttctgaacatgcgagacgccgaggggaacactgccctgcaccttgctgtgcaggccgggagcctccgaatgttctccgtgctgttcgggaatcgccaggtacgcttgaacttgaccaataacaatggggaaactcctctagatatatcacggtacaagatccccagaggaatgtactacggtcaggtaattatttctcaactgtgatagtaatttttatttttcaagaatagtaattaataagctttctagtaattaattggagagaggttgttttccttcttcttttgcagaacagtgaaccaaaaatacacgattcgctcgcactcgccggggctaccaacggctcttgtcgtttggatcattttcagcagagttatactcagctgaccaagcatgatgaaaaggaggaatcagataaggtgagagattcgacacaaactctagcaatcggctcagttctgctggcgactgtgacgttcggtgcgactttcgctctgcctggaggctacagagccgatgatcacgtcaacggaggtacaccaacacttgcagggaggtatacctttcatgccttcatcatggccaacacatttgcacttatcttcgccgccatagctaccattgggctcatgtactctggatccccactgttcaactcaaggagccgcaagacctacttggttacagccttgtactgcatggagacctcggtcgcctgcttgattgctaccttcgcagtgggtttgtatatggtgctagctccggttgctcacaagactgccatagcaatatgtgtcctcagccccgttgtcctgctaagcaagaacatggagttttgggtgaagtgggcccttcttgcagcaccactatataacagaatggggctactatgggcaatgcgaaacttcgcttcagtactactgaaaaatactctatacgagtgttggcccttcatattgatctttagttgggccgcatatgcaaggaacagctagctaccacagtctaaaggacggaacaacgaccagctagcaccttaatttggctagaagcgccatcacatgctgtcttcagtattaccatgtcattggaattgtagaatggagcagcaatgccagcacccagcagtgcgttgcttcaggaaaaactctagagtatctgtc
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| CDS seq | atggtggcgtcgggcaacaacacggcagcaccgctggcgaatacgctcccggcggtcattaatcccctactgctagcaacggcctgcactggctctcccaagggactggatcttcttctcaacagcaaggttgcagcaggtgatcaacgagtgctaccattcgcacttggaagccagagatttcgtgacctgatatcagcatatacctccagcgacagatcctccttagcgacgccgacgcagcgaatccctcctcatgacgacccagaagcacttttggcagagatgctgatgctggaaggggtcgcagttgatggggacaccgtgcttcacgcggtggccacctatggcgagaatgatgactttcagaagtgtgctcaaactatgtgcagcaaggcgaggcagctcctcttcaagcaaaacaagaacggtgacacgCccctgcactgcgctgcacgggcaggtaaatcccaaatggtctcttgcctcattgatctggccagaggcggtggcggcgacggcaacagcagcagcagcagcagcaacaatggcgggagtacggacagagtgaaggaactgctggaaacggaaaacgagcttaaggagacggccttgcatgaggctgttcgcattggggataatgctatggtcgagctgctactgcaggagtatcccgagctggccagttttccaaaagacggcacctcacctttgttcttagccatcttgctgcaggagaacatcatcgtggagacgctgtacagtaagagcaacaagaagctttcttactctggacaaaagggacaaaatgctcttcatgctgctgtcctccgaggcacagatgtcactaggaagatactgaaatggaacaagaatcttagcacggaaagggatgagaagggcagtacgccccttcactttgcggcggccaagtatttcgatgttgtgcgaacccagctgggactgatcaggccgttcttcgcggctgcggcgctgagacaatcgcgaggaagcgtgtgctggctcgtcctggatgctaatccggccgcgctgtaccaagccgaccatgacgggttgtacccgatacatgtagcagcctcggtgggcgccgtaggctccatcgccatcttcgtcgacgcgtcgcccagctgcgccggcctgcgcgacgccaagcggaggactttccttcacgttgccgtcgagagagggcagatcgacgtcgccggttatgcttgcagcaacaggctgctgtcatgggttctgaacatgcgagacgccgaggggaacactgccctgcaccttgctgtgcaggccgggagcctccgaatgttctccgtgctgttcgggaatcgccaggtacgcttgaacttgaccaataacaatggggaaactcctctagatatatcacggtacaagatccccagaggaatgtactacggtcagaacagtgaaccaaaaatacacgattcgctcgcactcgccggggctaccaacggctcttgtcgtttggatcattttcagcagagttatactcagctgaccaagcatgatgaaaaggaggaatcagataaggtgagagattcgacacaaactctagcaatcggctcagttctgctggcgactgtgacgttcggtgcgactttcgctctgcctggaggctacagagccgatgatcacgtcaacggaggtacaccaacacttgcagggaggtatacctttcatgccttcatcatggccaacacatttgcacttatcttcgccgccatagctaccattgggctcatgtactctggatccccactgttcaactcaaggagccgcaagacctacttggttacagccttgtactgcatggagacctcggtcgcctgcttgattgctaccttcgcagtgggtttgtatatggtgctagctccggttgctcacaagactgccatagcaatatgtgtcctcagccccgttgtcctgctaagcaagaacatggagttttgggtgaagtgggcccttcttgcagcaccactatataacagaatggggctactatgggcaatgcgaaacttcgcttcagtactactgaaaaatactctatacgagtgttggcccttcatattgatctttagttgggccgcatatgcaaggaacagctag
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| Protein seq | MVASGNNTAAPLANTLPAVINPLLLATACTGSPKGLDLLLNSKVAAGDQRVLPFALGSQRFRDLISAYTSSDRSSLATPTQRIPPHDDPEALLAEMLMLEGVAVDGDTVLHAVATYGENDDFQKCAQTMCSKARQLLFKQNKNGDTPLHCAARAGKSQMVSCLIDLARGGGGDGNSSSSSSNNGGSTDRVKELLETENELKETALHEAVRIGDNAMVELLLQEYPELASFPKDGTSPLFLAILLQENIIVETLYSKSNKKLSYSGQKGQNALHAAVLRGTDVTRKILKWNKNLSTERDEKGSTPLHFAAAKYFDVVRTQLGLIRPFFAAAALRQSRGSVCWLVLDANPAALYQADHDGLYPIHVAASVGAVGSIAIFVDASPSCAGLRDAKRRTFLHVAVERGQIDVAGYACSNRLLSWVLNMRDAEGNTALHLAVQAGSLRMFSVLFGNRQVRLNLTNNNGETPLDISRYKIPRGMYYGQNSEPKIHDSLALAGATNGSCRLDHFQQSYTQLTKHDEKEESDKVRDSTQTLAIGSVLLATVTFGATFALPGGYRADDHVNGGTPTLAGRYTFHAFIMANTFALIFAAIATIGLMYSGSPLFNSRSRKTYLVTALYCMETSVACLIATFAVGLYMVLAPVAHKTAIAICVLSPVVLLSKNMEFWVKWALLAAPLYNRMGLLWAMRNFASVLLKNTLYECWPFILIFSWAAYARNS |
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| Function | Ankyrin repeat-containing protein At2g01680 [UniProtKB/Swiss-Prot:Q9ZU96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0050210 | OsLiXu_Ung0050210.02 | ChrUN-Ctg384 | 176622 | 179811 | + | NAM | ||
| CDS seq | atggtggcgtcgggcaacaacacggcagcaccgctggcgaatacgctcccggcggtcattaatcccctactgctagcaacggcctgcactggctctcccaagggactggatcttcttctcaacagcaaggttgcagcaggtgatcaacgagtgctaccattcgcacttggaagccagagatttcgtgacctgatatcagcatatacctccagcgacagatcctccttagcgacgccgacgcagcgaatccctcctcatgacgacccagaagcacttttggcagagatgctgatgctggaaggggtcgcagttgatggggacaccgtgcttcacgcggtggccacctatggcgagaatgatgactttcagaagtgtgctcaaactatgtgcagcaaggcgaggcagctcctcttcaagcaaaacaagaacggtgacacgCccctgcactgcgctgcacgggcaggtaaatcccaaatggtctcttgcctcattgatctggccagaggcggtggcggcgacggcaacagcagcagcagcagcagcaacaatggcgggagtacggacagagtgaaggaactgctggaaacggaaaacgagcttaaggagacggccttgcatgaggctgttcgcattggggataatgctatggtcgagctgctactgcaggagtatcccgagctggccagttttccaaaagacggcacctcacctttgttcttagccatcttgctgcaggagaacatcatcgtggagacgctgtacagtaagagcaacaagaagctttcttactctggacaaaagggacaaaatgctcttcatgctgctgtcctccgaggcacagatgtcactaggaagatactgaaatggaacaagaatcttagcacggaaagggatgagaagggcagtacgccccttcactttgcggcggccaagtatttcgatgttgtgcgaacccagctgggactgatcaggccgttcttcgcggctgcggcgctgagacaatcgcgaggaagcgtgtgctggctcgtcctggatgctaatccggccgcgctgtaccaagccgaccatgacgggttgtacccgatacatgtagcagcctcggtgggcgccgtaggctccatcgccatcttcgtcgacgcgtcgcccagctgcgccggcctgcgcgacgccaagcggaggactttccttcacgttgccgtcgagagagggcagatcgacgtcgccggttatgcttgcagcaacaggctgctgtcatgggttctgaacatgcgagacgccgaggggaacactgccctgcaccttgctgtgcaggccgggagcctccgaatgttctccgtgctgttcgggaatcgccaggtacgcttgaacttgaccaataacaatggggaaactcctctagatatatcacggtacaagatccccagaggaatgtactacggtcagaacagtgaaccaaaaatacacgattcgctcgcactcgccggggctaccaacggctcttgtcgtttggatcattttcagcagagttatactcagctgaccaagcatgatgaaaaggaggaatcagataaggtgagagattcgacacaaactctagcaatcggctcagttctgctggcgactgtgacgttcggtgcgactttcgctctgcctggaggctacagagccgatgatcacgtcaacggaggtacaccaacacttgcagggaggtatacctttcatgccttcatcatggccaacacatttgcacttatcttcgccgccatagctaccattgggctcatgtactctggatccccactgttcaactcaaggagccgcaagacctacttggttacagccttgtactgcatggagacctcggtcgcctgcttgattgctaccttcgcagtgggtttgtatatggtgctagctccggttgctcacaagactgccatagcaatatgtgtcctcagccccgttgtcctgctaagcaagaacatggagttttgggtgaagtgggcccttcttgcagcaccactatataacagaatggggctactatgggcaatgcgaaacttcgcttcagtactactgaaaaatactctatacgagtgttggcccttcatattgatctttagttgggccgcatatgcaaggaacagctag
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| Protein seq | MVASGNNTAAPLANTLPAVINPLLLATACTGSPKGLDLLLNSKVAAGDQRVLPFALGSQRFRDLISAYTSSDRSSLATPTQRIPPHDDPEALLAEMLMLEGVAVDGDTVLHAVATYGENDDFQKCAQTMCSKARQLLFKQNKNGDTPLHCAARAGKSQMVSCLIDLARGGGGDGNSSSSSSNNGGSTDRVKELLETENELKETALHEAVRIGDNAMVELLLQEYPELASFPKDGTSPLFLAILLQENIIVETLYSKSNKKLSYSGQKGQNALHAAVLRGTDVTRKILKWNKNLSTERDEKGSTPLHFAAAKYFDVVRTQLGLIRPFFAAAALRQSRGSVCWLVLDANPAALYQADHDGLYPIHVAASVGAVGSIAIFVDASPSCAGLRDAKRRTFLHVAVERGQIDVAGYACSNRLLSWVLNMRDAEGNTALHLAVQAGSLRMFSVLFGNRQVRLNLTNNNGETPLDISRYKIPRGMYYGQNSEPKIHDSLALAGATNGSCRLDHFQQSYTQLTKHDEKEESDKVRDSTQTLAIGSVLLATVTFGATFALPGGYRADDHVNGGTPTLAGRYTFHAFIMANTFALIFAAIATIGLMYSGSPLFNSRSRKTYLVTALYCMETSVACLIATFAVGLYMVLAPVAHKTAIAICVLSPVVLLSKNMEFWVKWALLAAPLYNRMGLLWAMRNFASVLLKNTLYECWPFILIFSWAAYARNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0050210 | OsLiXu_Ung0050210.01 | ChrUN-Ctg384 | 176447 | 176753 | + | NAM | ||
| CDS seq | atgaagaggggcggcaaggcagtttgcaacttgcaagttgaaattgggtttgtgtattcaattgcacacgcaagtcctgctgccgtcctctacggcctgggcatagttgagctcggagcttctcgcaaggaagagaaggcttggcagttgtcaccttgcaatggcgatggcgtcgagcagtggagactggagagccatgttctagctcggccacgcccacgcccacacccacggcagcaaccatggatgccaaactga
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| Protein seq | MKRGGKAVCNLQVEIGFVYSIAHASPAAVLYGLGIVELGASRKEEKAWQLSPCNGDGVEQWRLESHVLARPRPRPHPRQQPWMPN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0322500 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15370 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0322500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005520 | RBH | 0.0 | 2.734341 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005540 | RBH | 0.074798 | 0.306244 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0162600 | SBH | 0 | 0.003447 | 0.063305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005340 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005770 | RBH | 0.0 | 0.465966 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005650 | RBH | 0.0 | 12.496614 | 0.0 |
