Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0047470 | OGI:99048140 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg355:10458-11429 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacattaggaaggactccgccactagtagctcattgatcccaaaaagagtgttgcatatagcttctgtctcaaaatgagactcatctcccgcaaagaattcatgtatgcagccatcgacttcaatgaaagagcaaccgggcttcttacttgtcctactattgcccatccctgtccgcacattattcacatcaacccatcttgatgtggtagcatatacattagagagtaaaacatgccctccacaccttttggttccaactgttcaattctttctgctgcatattctgcaagccccacttgtccagaagctctacaggcaaacaacaatgaccgccactacacatcaggagcgacaggcatatctttaatgaattgctctgcctctgccaacagcttggcacgtcccaaaaggtcgaccatgcatccatagtgttcgattcttggcacaaggttgtagaccttggacatgcgatggaagtgatggtacccctgttccactaaacctccatggctgcaagcagttagcacacccaaaaaaatgacctcattcggcataaccttatcttctccttccatctttgcaaacaaatctagtgcctcaacgcagagaccattcatagcaaagcccattatcattactgtccaagtaaacacatccgctttgtcaatccacgaaatatctgataggccttgtttacatccccgcacttcgagtacatatcaatcaacgaatttttcacagaaagctctttccctaaaccatgaccatcacaataagcatggagataccgtcccaagtcaagtgctcccatctggccacatgatgatacaacagtagcaatgtagcgtcatcagccttcacaccagcaatttgcatgtccctaaacagatcaacagcctctttaaacctaccagattgtgtacatccagcaatcattgaggtccagcaaactacattcctttcaggcat
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| CDS seq | atgggctttgctatgaatggtctctgcgttgaggcactagatttgtttgcaaagatggaaggagaagataaggttatgccgaatgaggtcatttttttgggtgtgctaactgcttgcagccatggaggtttagtggaacaggggtaccatcacttccatcgcatgtccaaggtctacaaccttgtgccaagaatcgaacactatggatgcatggtcgaccttttgggacgtgccaagctgttggcagaggcagagcaattcattaaagatatgcctgtcgctcctgattggcggtcattgttgtttgcctgtagagcttctggacaagtggggcttgcagaatatgcagcagaaagaattgaacagttggaaccaaaaggtgtggagggcatgttttactctctaatatgggttgatgtgaataatgtgcggacagggatgggcaatagtaggacaagtaagaagcccggttgctctttcattgaagtcgatggctgcatacatgaattctttgcgggagatgagtctcattttgagacagaagctatatgcaacactctttttgggatcaatgagctactagtggcggagtccttcctaatgtaa
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| Protein seq | MGFAMNGLCVEALDLFAKMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDWRSLLFACRASGQVGLAEYAAERIEQLEPKGVEGMFYSLIWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFETEAICNTLFGINELLVAESFLM |
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| Function | Pentatricopeptide repeat-containing protein At4g21065 [UniProtKB/Swiss-Prot:A8MQA3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0047470 | OsLiXu_Ung0047470.01 | ChrUN-Ctg355 | 11095 | 11429 | - | NAM | ||
| CDS seq | atgcctgaaaggaatgtagtttgctggacctcaatgattgctggatgtacacaatctggtaggtttaaagaggctgttgatctgtttagggacatgcaaattgctggtgtgaaggctgatgacgctacattgctactgttgtatcatcatgtggccagatgggagcacttgacttgggacgggaaagagctttctgtgaaaaattcgttgattgatatgtactcgaagtgcggggatgtaaacaaggcctatcagatatttcgtggattgacaaagcggatgtgtttacttggacagtaa
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| Protein seq | MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATLLLLYHHVARWEHLTWDGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRMCLLGQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0047470 | OsLiXu_Ung0047470.02 | ChrUN-Ctg355 | 10458 | 11089 | - | NAM | ||
| CDS seq | atgggctttgctatgaatggtctctgcgttgaggcactagatttgtttgcaaagatggaaggagaagataaggttatgccgaatgaggtcatttttttgggtgtgctaactgcttgcagccatggaggtttagtggaacaggggtaccatcacttccatcgcatgtccaaggtctacaaccttgtgccaagaatcgaacactatggatgcatggtcgaccttttgggacgtgccaagctgttggcagaggcagagcaattcattaaagatatgcctgtcgctcctgattggcggtcattgttgtttgcctgtagagcttctggacaagtggggcttgcagaatatgcagcagaaagaattgaacagttggaaccaaaaggtgtggagggcatgttttactctctaatatgggttgatgtgaataatgtgcggacagggatgggcaatagtaggacaagtaagaagcccggttgctctttcattgaagtcgatggctgcatacatgaattctttgcgggagatgagtctcattttgagacagaagctatatgcaacactctttttgggatcaatgagctactagtggcggagtccttcctaatgtaa
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| Protein seq | MGFAMNGLCVEALDLFAKMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDWRSLLFACRASGQVGLAEYAAERIEQLEPKGVEGMFYSLIWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFETEAICNTLFGINELLVAESFLM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0538800 | SBH | 1.459534 | 1.716436 | 2.862342 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g42610 | SBH | 0.987013 | 1.154446 | 0.736822 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0538800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0023760 | SBH | 0.444739 | 2.421902 | 2.193058 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023550 | SBH | 0.471081 | 5.804913 | 3.275485 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0427000 | SBH | 1.623302 | 3.4482345 | 3.431504 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023350 | SBH | 0.108228 | 0.000000 | 0.580642 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0447300 | SBH | 2.5965345 | 4.2032965 | 4.6861545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0023720 | RBH | 0.309066 | 0.071569 | 0.298531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
