Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0019280 | OGI:99027400 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg152:302533-305096 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttagctagtacaaatatgaactgtttctaatcttctggttactctagtgcagcaagctatacatttgcgaacttaagaagaagttagctacatcagtcaaaatggtgtgttatcctcttcctccctctcaagattttatcaacattttccacattcaacactgtaagaacataccgatctgtctgtggatgatttagagcatgaaagttaccaagtttggtccatggggaggaccaggcggagattatagagatgttcaggtggctccttatcggctcgttcgcctaacaatccgcagcggagacaccgtcgacgggatctccttcacctacatcggcatcgatggtctcgtgtaccacatgggtcattgggttctgatggtggtgttccgcatgaggtaaagtctaccactgatactcctctcttcctctatctttttcttctatgtctatgtagctgtggtttgcatctccaatatttatatataaagttataactagatggtactctatgtgttgctgccgaaattcatacaaaatgattagcttgaaattgtgttggatgatttttttataggtaatgttatggatgaggcgacaataatggtgcatagaaagtgccataattctcttaggtagcccaagcaaagcgttgcacactgtatagtagtactattatagtaacatatccgaacaaggtttaaaaggatccagtacagctacaaacatctccgaatgaggttaagtttgcactgggctctgaaggaccatgttgatattgatgttagatacaagctaggaaggtagcccgcgcagttgagtggcatcttatttaaactatcatattttttgtggttaggattttgagtattttgactttaatttgtctatcggtgaaagaatttgaaggttcctttatactacatgattgaaaaaatatataggtcgaaaatagtttagaaatgcatgagtaaaatagagtaaacaaattttggaccgagtacagaaataacatgaattttaaatttgttaacccacatagatcaaatcatcatctatcattgcgtaaataaactgcagttaaccaaacaacctttgcattagcagcttgattgtctccatcccatgcgaagggaaaaaacatgcgcatgcatcttatttcaattttattaattttattgtcatagacatatgctgcaactttttatatgcaccatgcatggatacctcgtaagcaatatgatttagggataagtagatagtgatagtgaggatatacctcctaagttagaattgatcaagtatattgtatactacatattaagcgttttagtatctaagtaataaatttaaggccgagttctaaagagcttattggattggctactcgtttatttatagtgagcacgtttccaaacggctaaacgtataatattttataattttctcataatttctattattttctcatttattatagtatcaggtagtagtttagagtcttcgtatggtgtttaatggattaaactttcctatgttttttttggcatggtatttgttggttatgaatttttccttcagaattactataatatattcatgcaaatcaaggatagtatagatatgcaatcgataggaagcacactatttcttcctacaatccaaaggagctttgaattttaatttaaaatcccaaatataatttgagctgaattcaaactttttaatggtgtattgcttttggatgttacaaagaaaacaaaactaaagagatgaacgtggggcctgtgtgggtacttatgtactgtacttatgtgcacctagaagtggggattttaagagataaatttaattggtagttttttaggtagatgtaatggataaacaatggatctaccacaataaataaaaccaacggttaaatacatttttcttataatttatatgatttattacaacgccacgtggtggcttataaggttgtagatatgctatgaggcggcttagaagtgtttgcagggatactatgtggcagcttactagcgtacgtaagaagtttaatgaactttcatatataatagatagatatataggtagattgtcaagaatagaaaatattgaactgagcataaaacctgtaaatatgaaatttacactctggaaaacaagttaaaattttaatttgaatgttttatgaaaaaaatatagcggcatatataagtattgatagtcctttagtcaaaacttgtgaattttttaagttatgaaaccgtttttttctttaatttgtgacatgttcatgcatggcaatgagcaaaatccgatgatttatagaggatagaggtttgaaaccagatgaattaattagacatgtactatccattatgtaatccatgtaaatgtacctgcagattcatctcggccttatggactttgtgatggaaatctctggcacaacgggcatgtgggtcagtggaatgagtaacgtcctacgatcactcaagatcaccaccttgaaaaggacttatgggccatacggcaaccctaagctgggatccttttag
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| CDS seq | atgagcatgaaagttaccaagtttggtccatggggaggaccaggcggagattatagagatgttcaggtggctccttatcggctcgttcgcctaacaatccgcagcggagacaccgtcgacgggatctccttcacctacatcggcatcgatggtctcgtgtaccacatgggtcattgggttctgatggtggtgttccgcatgaggtttaaaaggatccagtacagctacaaacatctccgaatgaggttaagtttgcactgggctctgaaggaccatgttgatattgatgttagatacaagctaggaagacatatgctgcaactttttatatgcaccatgcatggatacctcattcatctcggccttatggactttgtgatggaaatctctggcacaacgggcatgtgggtcagtggaatgagtaacgtcctacgatcactcaagatcaccaccttgaaaaggacttatgggccatacggcaaccctaagctgggatccttttag
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| Protein seq | MSMKVTKFGPWGGPGGDYRDVQVAPYRLVRLTIRSGDTVDGISFTYIGIDGLVYHMGHWVLMVVFRMRFKRIQYSYKHLRMRLSLHWALKDHVDIDVRYKLGRHMLQLFICTMHGYLIHLGLMDFVMEISGTTGMWVSGMSNVLRSLKITTLKRTYGPYGNPKLGSF |
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| Function | Horcolin [UniProtKB/Swiss-Prot:P82953] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0019280 | OsLiXu_Ung0019280.01 | ChrUN-Ctg152 | 302533 | 305096 | + | NAM | ||
| CDS seq | atgagcatgaaagttaccaagtttggtccatggggaggaccaggcggagattatagagatgttcaggtggctccttatcggctcgttcgcctaacaatccgcagcggagacaccgtcgacgggatctccttcacctacatcggcatcgatggtctcgtgtaccacatgggtcattgggttctgatggtggtgttccgcatgaggtttaaaaggatccagtacagctacaaacatctccgaatgaggttaagtttgcactgggctctgaaggaccatgttgatattgatgttagatacaagctaggaagacatatgctgcaactttttatatgcaccatgcatggatacctcattcatctcggccttatggactttgtgatggaaatctctggcacaacgggcatgtgggtcagtggaatgagtaacgtcctacgatcactcaagatcaccaccttgaaaaggacttatgggccatacggcaaccctaagctgggatccttttag
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| Protein seq | MSMKVTKFGPWGGPGGDYRDVQVAPYRLVRLTIRSGDTVDGISFTYIGIDGLVYHMGHWVLMVVFRMRFKRIQYSYKHLRMRLSLHWALKDHVDIDVRYKLGRHMLQLFICTMHGYLIHLGLMDFVMEISGTTGMWVSGMSNVLRSLKITTLKRTYGPYGNPKLGSF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0295400 | SBH | 1.105788 | 0.668916 | 0.766761 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g22900 | SBH | 0.421105 | 0.210988 | 0.208286 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0295400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007150 | SBH | 5.063826 | 0.0 | 13.674445 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0006930 | SBH | 0.124397 | 0.0 | 1.212846 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007000 | SBH | 6.536241 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0006890 | RBH | 0.529620 | 0.0 | 0.911772 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007170 | SBH | 0.385301 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
