Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0295400 | OGI:04042440 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:12989808-12996145 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TACAAAGAATTCTCTCTTTGGACCTATATATCCGTCTATCTATCTATAGTGTGGGATGCTCAAAACCCAAGTATACACATCTTAGCTAGTACAAATATGAACTGTTTCTAATCTTCCTGGTTACTCTAGTGCAGCAAGCTATACATTTGCGAACTTAAGAAGAAGTTAGCTACATCAGTCAAAATGGTGTGTTATCCTCTTCCTCCCTCTAAAGATTTTATCAACATTTTCCACATTCAAAACTGTAACAACATACCGATCTGTCTGTGGATGATTTAGAGCATGATAGTTACCAAGTTTGGTCCATGGGGAGGACCAGGCGGAGATTATAGAGACGTTCAGGTGGCTCCTTATCGGCTCGTTCGCCTAACAATCCGCAGCGGAGACACCGTCGACGGGATCTCCTTCACCTACATCGGCAACGATGGTCTCGTGTACCACATGGGTCATTGGGGTTCCGATGGTGGTGTTCCGCATGAGGTAAAGTCTACCACTGATACTCCTCTCTTCCTCTATCTCTTTCTTTCTATGTCTATGTAGCTGTGGTTTGCATCTCCAATATTTATATATAAAGTTATAACTAGATGGTACTCCATGTGTTGCTGCCGAAATTCATACAAAATGATTAGCTTGAAATTGTGTTGGATGATTTTTTTATAGGTAATGTTATGGATGAGGCGACAATATAATGGTGCATAGAAAGTGCCATAATTCTCTTAGGTAGCCCAAGCAAAGCGTTGCACACTGTATTAGTAGTACTATTATAGTAACATATCCGAACAAGGTTTAGAAGGATCCAGTACAGCTACAAACATCTCCGAATGAGGTTAAGTTTTGCACTGGGCTCTGAAGGACCGATGTTGATATTGATGTTAGATACAAGCTAGGAAGGTAGCCCGCGCAGTTGAGCTGGCATCTTATTTAAACTATCATATTTTTTGTGGTTAGGATTTTGAGTATTATGACTTTAATTTGTCTGTCGATGAAAGAATTTGAAGGTTCCTTTATACTACATGATTGAAAAAATATATAGGTCAGAAATAGTTTAGAAATGCATGAGTAAAATAGAGTAAACAAATTTTGGACCGAGGACAGAAATAACATGAATTTTAAAATTTGTTAACCCACATAGATCAAATCATCATCTATCATTGCGTAAATAAACTGCAATTAACCAGACAACCTTTGCATTAGCAGCTTGATTGTCTCCATCCCATGCGAAGGGAAAAAAACATGCGCATGCATCTTATTTCAATTTTATTAATTTTATTGTCATAGACATATGCTGCAACTTTTTATATGCACCATGCATGGATACCTCGCAAGCAATATGATTTAGGGATAAGTAGATAGTGATAGTGAGGATATACCTCCTAAGTTAGAATTGATCAAGTATATTGTATACTACATATTAAGCGTTTTAGTATCTAAGTAATAAATTTAAGGCCGAGTTCTAAAGAGCTTATTGGATTGGCTACTCGCTTATTTATAGTGAGCACACTTCCCAAACGGCTAAACGTGTAATATTTTATATTTTTCTCATAATTTCTATTATTTTCTCAATTTATTATAGTATCAGGTAGTAGTTTAAGAGTCTTCGTATGGTGTTTAATGGACTTAAACTTTCCTATGTTTTTTTTGGCATGGTATTGGTTGGTTATGAATTTTTCCTTCAGAATTACTATAATATATTCATGCAAATCAAAGGATAGTATAGATATGCAATCGATAGGAAGCACACTATTTCTTCCTACAATCCAAAGGAGCTTTGAATTTTAATTTTAAATCCCAAATATAATTTTGAGCTGAATTCAAACTTTTTAATGGTGTATTGCTTTTTGGATGTTACAAAAGAAAACAAAACTAAAGAGATGAACGTGGGGCCTGTGTGGGTACTTATGTAATGTACTTATGTGCACCTAGAAGTGGGGATTTTAAGAGATAAATTTAATTGGTAGTTTTTTTAGGTAGATGTAATGGATAAACAATGGATCTACCACAATAAATAAAAACCAACGGTTAAATACATTTTTCTTAGAATTTATATGATTTATTACAACGCCACGTGGTGGCTTATAAGTGTTTGTAGATATGCTATGAGGCGGGAAAGAAGCGTTCGTAGGGATGATATGTGGCAGCTTACTAGCGTACGTAAGAAGTTTAATGAACTTTCAATATATAATAGATAGATATATAGATAGATATATAGGTAGATTGTCAAGAATAGAAAAAATTGAACTGAGCATAAAACCTGTAAATATGAAATTTACACTCTGGAAAACAAGTTAAAATTTTAATTTGAATGTTTTATGAAAAAAATATAGCGGCATATATAAGTATTGATAGTCCTTTAGTCAAAACTTGTGAATTTTTTAAGTTATGAAACCGTTTTTTTCTTTAATTTGTGACATGTTCATGCATGGCAATGGGCAAAATCCGATGATTTATAGTGGATAGAGGTTTGAAACCAGATGAATTAATTAGACATGTACTATCCAATTATGTAATCCATGTAAATTGTACCTGCAGATTCATCTCGGCCTTATGGACTTTGTGATGGAAATCTCTGGCACAACGGGCATGTGGGTCAGTGGAATGAGTAACGTCCTACGATCACTCAAGATCACCACCTTGAAAAGGACTTATGGGCCATACGGCAACCCTAAAGCTGGGATCCCTTTTAGCTTCTCAGTTGATGGCAGTGATCGGATCACTGGCTTTTTCGTACGCGCTGGCTTTATAACCGATGCAATTGGAGTCTATGTTCGTCACTGCTAGAGTTTTAGGCTAGAAAAAATACCCATGCTTTACAACGGGTGAAGGTTATTTTATTGTTATATGATTTAGTTAAGGTGAAATTCACTGTGGGAATTCACTTGGATATATATTTTTCTAAAAAATCATGAGCTGCAATTAAGAGTCCGATCATCTTAAGTTAGTATGTGAGTTTTTTTTAAGAAATATATTATACGACTCCTTCCGTATTTCCAAAAGCGAACGGGCTTAAAACCCGACTCAAATACGGATCTATATTTTCAAAATAAAATGAACTTAAAAACCAACTCTATATATAGATGACATACCAAAGCAAAAATATCTTCAAATTTTATATTACTATAGATAATGAAATGAATCTCGATCTTTGCCGCACTGAAAAGCTACAGCCGCTGCTAGCTACATAGTTATCCACATTTTCAAAGATAAGTTTTTTACTCGATTAATTTCTCAGTGCCTCTAGCCGGGTGGGTGCCGGAAGTAGTTTCTACCCATGTAGTGATGTAGACATACCAGCATGCAAGGACAATATTGGTTCTCCAACAATTATAGTTCAATAGATTTAAGTGAAATGTAATAAACAGTGCGACAATATATTAAGTGAAGTATTGGATTAGACATATTAGTCGTCAACCTGTGAGTTGCACATGTGGAAATATTTAAATCAAATTGAATCATACATGTGGTTAAATGCATTGTTATTTTTTCCCTAAAAATGATTTTATCATGATCGCAGCTCAAAAAACGGGTGTTCCCAACATTACAATGATTAGAAAAAAAGATAATATACAAGCACTATGAGTATTTGGATTAGTGGGATCCATACACACATAAGTAATACTCACTCTCATTGTCTATGACCACAGTTGACACCTTCCCATATAATAACAATGATGCCGAGTAGTGAGTAGGAGAGATACTCAATAGGATAGCTTACCAGTCCCTCCCCAAGATACGCCGGTCAAACTACACAAGGTGGTGTATACATACCACAGATAAGTCGATCTATAAGGGCTATCCCATAACTATCTCAAGTGTTCAAAACGCATACTTGTGCTCGACTAATTCCGATCCCAGCAAAAGAACTAGCCTCCCACTTTTAGCTTAATTAACCAAGTTATCGAAATATGGTGCAAGAAGGATAATTTAAGAAAAACTAGAGACATATAGCCAACTTATATGCATATGGTAGACTGGCGTAATAGTAAAAGTTCAGTGGACTAGGGGTAGGCCCCTAGGTCAACTAGACTTATACTAAACATGCAGACTGACTAGGGGTAGGCCCCTAGTTCAAACCATCCTGAAGAAGTTAACAACTAGTGATATTTGCAATCATATGACAATATTGCATTGCACAAAAGGAGATACAATCATTTTGTCTTCATCGCTCATGTTAGTTTGATCGTTGTGTCTGGTAGGAGAACTAATGCATACTATGGTATCTTGTGTAAGATGCGCATTTATGGAAGTACACTTGCACCATCAAAAAACTTACTTACTTGAAATGATTTTCCTTGTCTGATCACATGTGACTGATCTAGTTATGATGCCTACTTGGTCATATATGACCACGATCACTCTGATACTCCTGATGATGCTCTAACCATTATATTTGGCATCTCAATGGAACTCTTCGTTTGCTTATTTTTGAAAAGTCGTGAGGCCTCAATAGGCAAAATACAAGAAGAATCAGATCAAAATTAAGGAAATTGCAAAAAAAAAAAGGTAGTGCGATCAACTGATGTAGAGTCCTTTCCGTCTTGAATGTCATACAAATGATCTGAATATTCGGAACCATCTTCACAGCTGACACATAGAGTTCAGTTGGGCCACCTGACCAGTGGCTCAATTGATACCATTACCATTTGTTAAAAGCGAAATTTAACAAGATTCACATGGATTTGGAGTTGGATATCGATGCGGAATCAAAGGAGATTGAATCTTACCAAATTCGAAATGCGCATCGGCTGGAAACATAGTTGGAAACGGATTGAGCCGATATGGCAGGTAGCCAATACAGCTTGACTTGGGCTCGGTTTGGGTTTAGATTGGAATAACTGATATTGCCGTATAGAGATTGAGCTCGCCTAAGGCAATTGTATCTATTAATTAGGATATTTATGTCGGTTTAAATTAGAGATATGATAAGAGTTTGCCATGTGGACTTGTTCGTATTTTATCTTTAGGAAAGCTTGAGTCGTGTCCGTAATGGACAAGTTTTGTACTCAGGGTATCAATATAAGCCCCATACAATTGTAATAGACGGATCGAATCAATACAACTTTCAGCGCATCGCCACCTTTCTCTTTTTTACTTTTCGACGAGTTCTTGTTTCAAGTCGGAGCATCGGTTGCGATCTCGCGATCTCTCAACAAGAGGTAACTTGTCTTGATGGCTTGCGCTATCGAGGCTATTATGTCGCTTTAGATGTATTAGTCCTATTATCATAGTCATTATTATCATATATCTTAAATAATCCTGACTTAGTATCTCGATTTAGTCATATCGACTGTTTCTCACTTTAGGGTTTACGCTGGCATCGACTAAATCATCTTACTAAATTATATTAACTAAGTTATCTACCATCCTGAAAAGCGGTTAATGACTTGATTGTCTAGACTTTATGCTTCTTTGCATACTTTGTGATGCATCATACCTAACCGTGCTTAGAATCATAGAAACTAACTAGGAATTAATCATAACTAAGGATAGTATCGGGGTTTCATCCGATCTTACCTAATATACTTGATAGCGCATATTTCCTGATCTGTTTATGTATATTTTCCATTTATATAGATAGAGATTGATCTCACTTAAACTTCATATTTCGTGATCAATTGCTATTTGGTATATTTATATATATTGATTTGTTTACATAAATTTGTATTGAAGTATTAGCCAGCACATTATCTATCTTTGCTTTAAATACTGATCTATTGGTTACTTCCATAATATTGTCTTAAAATAATTGATATAAACCAAGGAAACAGTATTACAGTTGATAGGGCATATTTAGGGTTTTAATCTGATTAACTATTATAAAGTCGCAACCAATTAGGTATACCCATATCGGCTAGGTCCTGACGATACGTCATCGGGCCTATTAGCAGATCCGCTACTATTCATCTAATTATATTTTCTGTTTCTCTTGCTGGTTTCAGGATCAAACCAGCTGGCACGCTCTTGACACTCGAGGCAAGCGTTGGACCTGCACTGGAGTGAAGGAAAACTCCTAGGGTGCCGTGTTTTCCATCAACACCATTATACCATCGGCACGAGTCATTGATCAACTTGTTAACTACGGGCAACTACATCAAGCTTTTACTGTTGCATATGGAATGTAGGAGATACATTAGGGATGCTGGCATCAGGAAACCTTTTTTTTGGAAGGCAGAGAAAACATAAACATTTTGCTAGTTGCTGTCACGTAGATTACCAAAATGCTCTTGGTGTGGTGCAACACATCCATTATGAATTTTGGGATGTCATGGGCATAATAGACATTCCGAACAAGATTTCACTTGATGACTTCGTGCATGAATTTTTGAAAGTGTCGTATGAGC
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| CDS seq | ATGAGCATGATAGTTACCAAGTTTGGTCCATGGGGAGGACCAGGCGGAGATTATAGAGACGTTCAGGTGGCTCCTTATCGGCTCGTTCGCCTAACAATCCGCAGCGGAGACACCGTCGACGGGATCTCCTTCACCTACATCGGCAACGATGGTCTCGTGTACCACATGGGTCATTGGGGTTCCGATGGTGGTGTTCCGCATGAGATTCATCTCGGCCTTATGGACTTTGTGATGGAAATCTCTGGCACAACGGGCATGTGGGTCAGTGGAATGAGTAACGTCCTACGATCACTCAAGATCACCACCTTGAAAAGGACTTATGGGCCATACGGCAACCCTAAAGCTGGGATCCCTTTTAGCTTCTCAGTTGATGGCAGTGATCGGATCACTGGCTTTTTCGTACGCGCTGGCTTTATAACCGATGCAATTGGAGTCTATGTTCGTCACTGCTAG
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| Protein seq | MSMIVTKFGPWGGPGGDYRDVQVAPYRLVRLTIRSGDTVDGISFTYIGNDGLVYHMGHWGSDGGVPHEIHLGLMDFVMEISGTTGMWVSGMSNVLRSLKITTLKRTYGPYGNPKAGIPFSFSVDGSDRITGFFVRAGFITDAIGVYVRHC |
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| Function | Horcolin [UniProtKB/Swiss-Prot:P82953] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0295400 | OsNip_04t0295400-01 | Chr04 | 12989808 | 12992730 | + | RAP2018-11-26 | ||
| CDS seq | ACATGTACTATCCAATTATGTAATCCATGTAAATTGTACCTGCAGATTCATCTCGGCCTTATGGACTTTGTGATGGAAATCTCTGGCACAACGGGCATGTGGGTCAGTGGAATGAGTAACGTCCTACGATCACTCAAGATCACCACCTTGAAAAGGACTTATGGGCCATACGGCAACCCTAAAGCTGGGATCCCTTTTAGCTTCTCAGTTGATGGCAGTGATCGGATCACTGGCTTTTTCGTACGCGCTGGCTTTATAACCGATGCAATTGGAGTCTATGTTCGTCACTGCTAG
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| Protein seq | TCTIQLCNPCKLYLQIHLGLMDFVMEISGTTGMWVSGMSNVLRSLKITTLKRTYGPYGNPKAGIPFSFSVDGSDRITGFFVRAGFITDAIGVYVRHC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0295400 | OsNip_04t0295400-02 | Chr04 | 12989866 | 12996145 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGCATGATAGTTACCAAGTTTGGTCCATGGGGAGGACCAGGCGGAGATTATAGAGACGTTCAGGTGGCTCCTTATCGGCTCGTTCGCCTAACAATCCGCAGCGGAGACACCGTCGACGGGATCTCCTTCACCTACATCGGCAACGATGGTCTCGTGTACCACATGGGTCATTGGGGTTCCGATGGTGGTGTTCCGCATGAGATTCATCTCGGCCTTATGGACTTTGTGATGGAAATCTCTGGCACAACGGGCATGTGGGTCAGTGGAATGAGTAACGTCCTACGATCACTCAAGATCACCACCTTGAAAAGGACTTATGGGCCATACGGCAACCCTAAAGCTGGGATCCCTTTTAGCTTCTCAGTTGATGGCAGTGATCGGATCACTGGCTTTTTCGTACGCGCTGGCTTTATAACCGATGCAATTGGAGTCTATGTTCGTCACTGCTAG
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| Protein seq | MSMIVTKFGPWGGPGGDYRDVQVAPYRLVRLTIRSGDTVDGISFTYIGNDGLVYHMGHWGSDGGVPHEIHLGLMDFVMEISGTTGMWVSGMSNVLRSLKITTLKRTYGPYGNPKAGIPFSFSVDGSDRITGFFVRAGFITDAIGVYVRHC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0295400 | OsNip_04t0295400-03 | Chr04 | 12989866 | 12996106 | + | IsoSeq | ||
| CDS seq | ATGGTCTCGTGTACCACATGGGTCATTGGGGTTCCGATGGTGGTGTTCCGCATGAGGATCAAACCAGCTGGCACGCTCTTGACACTCGAGGCAAGCGTTGGACCTGCACTG |
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| Protein seq | MVSCTTWVIGVPMVVFRMRIKPAGTLLTLEASVGPAL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 12990287 | 12995744 | + | OsNip_04t0295400-02 | OsNip_04t0295400-02,OsNip_04t0295400-03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.105788 | 0.668916 | 0.766761 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g22900 | RBH | 0.421105 | 0.210988 | 0.208286 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0295400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008430 | SBH | 5.664021 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009060 | SBH | 1.469300 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001090 | RBH | 0.0 | 0.000000 | 3.449867 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008500 | SBH | 1.911417 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007150 | RBH | 5.063826 | 0.0 | 13.674445 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0207700 | RBH | 0.3800135 | 0 | 0.0899185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0006930 | RBH | 0.124397 | 0.0 | 1.212846 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0210700 | RBH | 1.394847 | 0.05472 | 0.0767215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008240 | SBH | 1.801483 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007000 | RBH | 6.536241 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0006890 | RBH | 0.529620 | 0.0 | 0.911772 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007170 | RBH | 0.385301 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009430 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009460 | SBH | 0.0 | 0.0 | 0.459822 |
