Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0007170 | OGI:04042440 | 8/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:13838118-13841426 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccaagtatacacatcttagctagtacaaatatgaactgtttctaatcttcctggttactctagtgcagcaagctatacatttgcgaacttaagaagaagttagctacatcagtcaaaatggtgtgttatcctcttcctccctctaaagattttatcaacattttccacattcaacactgtaacaacataccgatctgtctgtggatgatttagagcatgaaagttaccaagtttggtccatggggaggaccaggcggagattatagagacgttcaggtggctccttatcggctcgttcgcctaacaatccgcagcggagacaccgtcgacgggatctcctttacctacatcggcatcgatggtctcgtgtaccacatgggtcattggggttccgatggtggtgttccgcatgaggtaaagtctaccactgatactcctctcttcctctatctctttctttctatgtctatgtagctgtggtttgcatctccaatatttatatataaagttataactagatggtactccatgtgttgctgccgaaattcatacaaaatgattagcttgaaattgtgttggatgatttttttataggtaatgttatggatgaggcgacaatataatggtgcatagaaagtgccataattctcttaggtagcccaagcaaagcgttgcacactgtattagtagtactattatagtaacatatccgaacaaggtttaaaaggatccagtacagctacaaacatctccgaatgaggttaagttttgcactgggctctgaaggaccgatgttgatattgatgttagatacaaactaggaaggtagcccgcacagttaagttggcatcttatttaaactatcatattttttgtggttaggattttgaatattatgactttaatttgtctgtcggtgaaagaatttgaaggttcctttatactacatgattgaaaaaATatataggtcggaaatagtttagaaatgcatgagtaaaatagagtaaacaaattttggaccgagtacagaaataacatgaattttaaaatttgttaacccacatagatcaaatcatcatctatcattgcgtaaataaactgcagttaaccagacaacctttgcattagcagcttgattgtctccatcccatgcgaagggaaaaaaaacatgcgcatgcatcttatttcaattttattaattttattgtcatagacatatgctgcaactttttatatgcaccatgcatggatacctcgtaagcaatatgatttagggataagtagatagtgatagtgaggatatacctcctaagttagaattgatcaaatatattgtatactacatattaagcgttttagtatctaagtaataaatttaaggccgagttctaaagagcttatttgattggctactcgtttatttatagtgagcacgtttcccaaacggctaaacgtgtaatattttatatttttctcataatttctattattttctctatttattatagtatcaggtagtagtttaagagtcttcgtatggtgtttaatggacttaaactttcctatgttttttttggtatggtattggttggttatgaatttttccttcagaattactataatatAttcatgcaaatcaaaggatagtatagatatgcaatcgataggaagcacactatttcttcttacaatccaaaggagctttgaattttaattttaaatcccaaATataattttgagctgaattcaaactttttaatggtgtattgctttttggatgttacaaaagaaaacaaaactaaagagatgaacgtggggcctgtgtGggtacttatgtactgtacttatgtgcacctagaagtggggattttaagagataaatttaattggtagattttttaggtagatgtaatggataaacaatggatctaccacaataaataaaaaccaacggttaaatacatttttcttagaatttatatgatttattacaacgccacgtggaggcttataagtgtttgtagatatgctatgaggcggcttagaagcgtttgtagggatgctatgtggcagcttactagcgtacgtaagaagtttaatgaacttttaatatataatagatagATATataggtagattgtcaagaatagaaaaaattgaactgagcataaaacctgtaaatatgaaatttacactctggaaaacaagttaaaattttaatttgaatgttttatgaaaaaaatatagcggcatatataagtattgatagtcctttagtcaaaacttgtgaattttttaagttatgaaaccgttttttttctttaatttgtgacatgttcatgcatggcaatgagcaaaatccgatgatttatagtggatagaggtttgaaaccagatgaattaattagacatgtactatccaattatgtaatccatgtaaattgtacctgcagattcatctcggccttatggactttgtgatggaaatctctggcacaacgggcatgtgggtcagtggaatgcgtaacgtcctacgatcactcaAGatcaccaccttgaaaaggacttatgggccatacggcaaccctgaagctgggatcccttttagcttctcagttgatggcagtgatcggatcactggctttttcgtacgcgctggctttataaccgatgcaattggagtctatgttcgtcactgctagagttttagactagAaaaaatacccatgctttacaacgggtgaaagttattttattgttatacgatttagttaaggtgaaattcactgtgggaattcgcttggatatatatttttctaaaaaatcatgagctgcaattaagagtccgatcatcttaagttagtatgtgagtttttttaaagaaatatattatacgactccttccgtatttccaaaagcgaacgggcttaaaacccgactcaaatacggatctatattttcaaaataaaatgaacttaaaaacaaactcatatatagatgacataccaaagcaaaaatatcttcaaaTtttatattactagagataatgAaatgaATctcgatcTTtgccgcactgaaaagctacagccgctgctagctacatagttatccacattttcaaagataagTtttttactcgattaatttctcagtgcctctagccgggtgggtgccggaagtagtttctacccatgtagtgatgtagacataccagcatgcaaggacAatattggttctccaacaattatagttcaatagatttaagtgaaatgtaataaacactgcgacaatatagacatattagtcgtc
More
|
||||||||||
| CDS seq | atgagcatgaaagttaccaagtttggtccatggggaggaccaggcggagattatagagacgttcaggtggctccttatcggctcgttcgcctaacaatccgcagcggagacaccgtcgacgggatctcctttacctacatcggcatcgatggtctcgtgtaccacatgggtcattggggttccgatggtggtgttccgcatgagattcatctcggccttatggactttgtgatggaaatctctggcacaacgggcatgtgggtcagtggaatgcgtaacgtcctacgatcactcaAGatcaccaccttgaaaaggacttatgggccatacggcaaccctgaagctgggatcccttttagcttctcagttgatggcagtgatcggatcactggctttttcgtacgcgctggctttataaccgatgcaattggagtctatgttcgtcactgc
More
|
||||||||||
| Protein seq | MSMKVTKFGPWGGPGGDYRDVQVAPYRLVRLTIRSGDTVDGISFTYIGIDGLVYHMGHWGSDGGVPHEIHLGLMDFVMEISGTTGMWVSGMRNVLRSLKITTLKRTYGPYGNPEAGIPFSFSVDGSDRITGFFVRAGFITDAIGVYVRHC |
||||||||||
| Function | Horcolin [UniProtKB/Swiss-Prot:P82953] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0007170 | OsLaMu_04g0007170.01 | Chr04 | 13838118 | 13841426 | + | NAM | ||
| CDS seq | atgagcatgaaagttaccaagtttggtccatggggaggaccaggcggagattatagagacgttcaggtggctccttatcggctcgttcgcctaacaatccgcagcggagacaccgtcgacgggatctcctttacctacatcggcatcgatggtctcgtgtaccacatgggtcattggggttccgatggtggtgttccgcatgagattcatctcggccttatggactttgtgatggaaatctctggcacaacgggcatgtgggtcagtggaatgcgtaacgtcctacgatcactcaAGatcaccaccttgaaaaggacttatgggccatacggcaaccctgaagctgggatcccttttagcttctcagttgatggcagtgatcggatcactggctttttcgtacgcgctggctttataaccgatgcaattggagtctatgttcgtcactgc
More
|
|||||||
| Protein seq | MSMKVTKFGPWGGPGGDYRDVQVAPYRLVRLTIRSGDTVDGISFTYIGIDGLVYHMGHWGSDGGVPHEIHLGLMDFVMEISGTTGMWVSGMRNVLRSLKITTLKRTYGPYGNPEAGIPFSFSVDGSDRITGFFVRAGFITDAIGVYVRHC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.385301 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0295400 | RBH | 1.105788 | 0.668916 | 0.766761 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g22900 | RBH | 0.421105 | 0.210988 | 0.208286 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0295400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008430 | SBH | 5.664021 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009060 | SBH | 1.469300 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008860 | SBH | 7.954593 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008500 | SBH | 1.911417 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007150 | RBH | 5.063826 | 0.0 | 13.674445 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0207700 | RBH | 0.3800135 | 0 | 0.0899185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0006930 | RBH | 0.124397 | 0.0 | 1.212846 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0210700 | RBH | 1.394847 | 0.05472 | 0.0767215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003980 | SBH | 0.326026 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007000 | RBH | 6.536241 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0006890 | RBH | 0.529620 | 0.0 | 0.911772 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001180 | SBH | 0.0 | 0.0 | 6.501612 |
