Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0012320 | OGI:99022220 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg94:479936-490440 | ||||||||
| Gene Symbol | RAP1B, MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10 | ||||||||||
| DNA seq | ttcatttcacgcctgaaagagaagatgcttcgagtttaatactagcatatccctgttcagttaaatacaacctctgaccaatatcttcatgttaaagttgtggctagattaatttattcataggctgagttctcatcagccggcacatagttccacagttctgaatgccattcttagaagactaatgcttagcattcgttatcctctcttgagaatttttagtggtaggggagtcagcagtgacagtgagcttgggcgccttggtatatttcttggtttttgtaatgggtaaaatgtttgtataggagtgacggcagaagatcattatatacaagatgatctcccattatttaactgagaatgtcacgccttattttctttgtaaacagtcgaacgatttatgcctatcaacttgttcgcatacaatttattcgttatgcagtatgcgctcaatcagctctgccggtgatcggacagattcagctccaatcagcaagataacggagacttattgtctacaaagtttatttatcttacagtaatcacactatgcacaatgctgaaatttcgctatttaagtcacacatgacaccaatggagatggttggaaacgggaaaatttgttcatgctactcgcatatattacatgggtaaattactggtgggaggaagacggtgctggacgaagccaaaatatacacattgcagcttgctactaatgctgaatttagggctaaaatgctttcctcgtctcgcaaccgcaagatgacaatagtactagtagtaaaccagagcagcaggcgaccggaccgggtcaggttgcaacttgtgattactggtatggatctgaagcctccttagccgttgatgtggctcagcatccatggtggcagcccaatgcgaacatgctgtggctgccctgctgctacatcctctatcctttcgccagctgctgcagggtagttactgtggaacgaataagcacacctcttagctacatcaccaaccaaaatgacaagaaaaggcccgctggcgttttgggggaaaaggggcagatttggcgtgttttcagacaaaaaaaagcgtaaaattctgaggtgcctaaaaaaggtttgatagttattggtttatacaaccttgttagaactttcagttgtttggtggttggtgccaaaatatgcccctattaagttgttggtatttttaatagtattttagctaatgtttgatttgctattaaaatatagtgataacatatataagttgacaaaaaaatgtagcacttccaatatttgtctaggttttagtatcgtcaatattttgatatggtagtgaactaaacgagccatttaattttgttttctaataaagctggatctaatgatctttagtccaaaaggttattcgtctgtgctacataaggacgaaactaacttcaggctgctagttacttacctgatattagttgttggaagggcttccctcatcatgaaggaggatgatgaggaacttgtttgaggttgtgtctggtcccattgcacttgttgcttctggactttctgcttctccaccagctgtaggaaggagcaagggttctgtcaatttaacttgattgatgttaaacaaaccaagatcagctgaagcatggaaactagggggcatcaaggctagcagcctacttctttctgtaggaccttattctcctcctgcagtgacttttcctgcagcaagaatccggcgtgcatgttagaaaatgaaagtgtggcagcacttgcagttgcaagcatggcgggaacttaaaataagagtatgaaacataacacgcgatggtatcaactggtggccggccaaagatttctcgagttttgacaaggttatttctagcaagtcccagtactcaattaaaggtctaacatggttgacatcattaccttccgttgaagctcgttaatggactcgagcattagttggctctgcacataaaggagatttgtaattgtcagctcgtaaaacatacaggacatctatatttagctgtataaaaaccatataaattttgcacatattgttgatatcagccttgaataattctcatcacaaaaacaacctttctggatctgatatgtttcaacgaattttccagctgctgctccagctgctgcagctctttgagattcaaagattcaagatcctctcccatgaggtgcctgcaggatttaaggcgaacaattttatgtcaacagtgtatagtacataatgtcataatggcaccagttgtgagtagtttccaattacttttgacatttctgtattgtctcaaccttagccttcagtttcctatattcgtggcaccagttgccctatacaagcaagcatagaagatttacattaataaatttgagtaaataggaagtatcacaatactattcatacattagctgatatttgaaaaattgccaggaagaactgattgtgcaaatgattgtgccctttggagtaccttgaatttctatattaacaagtgtaactttaatcgattttggcactgcatatagctaaaactgtggacacctagaactgcaagatacctccgtggagaattgcttaggtacagtgtatattgaataaatggatttacttcagtgtgcttgcagtaaaatatgattaactttgtcccccactccacacttaccttttcttctcgacactcatcaaactaaatttactggtggatgtacagtgacctccacaattctaagcacagaatcactaatattacaagtttagaaattgaatgtgctgaagagtatacaatagtgccatccaaaatctatatagagaaaagctctaagcagatagtgcatgttaggaaagggaactataatgtatgtttccttgacaattcatcagcgtgataactatattatctactatgtccaaagtagcaaacatttctaggaatgataacagggttacagtctgcctagctagttcagctttttgtaatatcttgattagaaaattctcagtctcactctttgtggtatggaaatatgacttaccactgtctgcataataactacattagttcagtcaacaatgttcatacacagcaacttcttacAaaaaatattgcaaacgaagaatatgcatgtctacatgggggatgctaattggagagcgcaagtcagttacggaactggcgcgcgcgccagctggcggtcccacgcgatttttttcctttttttttgtgtttcctttttttccatctttttcgtttttttcttttttcgctattctttcgtgttttttctgatttttttaattgttaggacacgtgttttcaaaaatatttgagctgaaaattttcaaatcttaacttgaaagttttcaatctgaacttgaaagttttcaaatctcgagttgaaagttttcaaatctgggtcaaaagtttttaatctcgagttgaaagttttcaaatctaaacttgaaagttttcaaatttggacttgaaaattttcaatcgcgagttgaaagttttcaaagtttatcttacaaatttaaatgtcgagttgaaaatttataaaatttgaattcaaaatttgaatcttaagtcgaaagttttcaatatgttagaaaaaaaatcttccaatagaaagaaaaatcttatcttaattaccgtcattatctaaaactaattcagttagttagagttgttaggagttaagcgctcccggaacgcgcgccgccagcgtgcgcgcgcccggcagcttttccggtctatatgtatctagccataaaagaacttctgattttggagtacactattagtccatcaaccccaactaaagagtaaagattattcgtaacaaatagacgaatggatctttttaatagcataattgactatagtaagtcccagctaaatgaaaacaaggattatttaaggttccaaacttctgatgagccacgccaaaagttctggaaaatgtttattttgttttatttgatgaaaaatatgttttgtgatattctctggcacacaaaattccataatgagtgttgatgtagtcatgcatccaaaattttttttatagtttttcattaggcaataactatgattttgttccagtaaaatccacaaaaggtatattgaatcatagtgtaaaaaatgtttgaataagagggaactggcaaagctgtatacgtgtaaacaaacatggaagataaatttgatctaatttgtgaacaaaatttcacttatgaaatgcaacaataccacaatttttaatgatctgacctgagagagagagcctaattaattgcaccaatataaagaacagttcagtttgagttttcaagatttcagacagcaaataggttcaattgggctgggatgccaaaaggtcaggacgctatgtaataaaaaatggatataatctaatttagaataaatctacatatttgataagtacattgaagtaagagattactgttcaaagagatgtaaagcaatatttattaaaagttgatctacataacaatggaaaattgccataaaaaatgatgcctaattgatttatccaacttgaggagagctaaaatgttggatgtacccgtcttgaatgagtcaaccgaaacaggtgtagtgaaaaagttcaaaaaataaacaagatattgagatatgagaaacaacagaattagagctctttatttttacctgagtgtcagattcagctgaaataaggaccttttctgcataggagtagcgctcataacgttcaaggattttgtccatactgtgaaaaatgaggaatatacgtttcatcatttgaaataattgtaataataactaagcagtatatatattcttccatctcaacaacaaatgcacatatggctgtaccttttcatatacaggtcagatacatacactgtatttatgattctggtctgttttttcttgaagtccatttttttaagaaaggataggaatttaacaggaaacctactttagtttccaggtttaaaataaaacgaaggaagaacaagaaagttgcacaggcgcgcacacacacttcaaaatctacttgagtgcaaccccttatgttttaacatggagttgttttagaaactgcgtatgcagtattgtcaaaacgaaaaggtgtatcactgtaacatcctaactgaaggatgcccatttctttgaatgtcttaataggtaagttagtgactatcactatgatgagaatatatatatataagtaatacaaaactagatattgttatatatttatgtgttgaagtaacttacatattgtgtgggaatataatatcaatacgatttcacttgccatacatgtactaaccaaaatcataggactagcagcatctaacaaaggccctcaactactaataatctctagttcaaaacatgaataggtttctcaaatgtcacagtggatattatgacatgtaaatgcgtaacccataataaaatgccatttgttttattcaaattcttttttgcaattatgtaaaaaaaaagagtcatgcttaaactacctttgatgcttaaaacacatcacaacaaaataaatgacaattacgtattttttaataagacgaacagtcaaacatatgtataaaagtcaacggtgttatacattcaaaattcaaatgggggtacttcgtagtggtgtaaataacaacacctacattttgcagtttattcttataagaacttatgtaagatataatacagaataaatttgccaatctacttctaacacaagagttggattaacacaccacccccccccacacacacagaaccctaaaaaaacaataaattgttgtatttatgcagttcatgaaaacggttttttgggcaaagctaacaataaacattttcatatatcagaatgatcagcttttggtggtagcactgatatgtttcaagttctaaaacattattaagtcttactccatccatttcatattacaagtcgttttgactttttcccaagtcaagcatttttacatttgaccaatttatagaaaaaaatagcaacatcaacaataccaaattagtttcgttaaatttaatattgaacatatttgataaaatgtttattttgtgttagaaatatttttatttttttctataaatttagtcaaacttaaaatagtttgactaggaaataaattcaaagtaacttataatatgaaatgaattataaatggagggagtagcttcattgtttgctaaagtatttccatgttcttgaggcactttgaacaagttcactttataaccaaaggatatatactttctacggcatactaaaatgtcaacctttcaaaagggtctgtataaccttttggggaaagataatatgcatatatatagaaggtatacttctggggcaaagtcaaggtaaacatgtaatacaagcatacatgtcaagaaaaagcttaagcaactgaactgtatctcattttcgttaagaaaaagaaatgaaacaggatagcaagtataactatctatagaaagaattaaggggaaatacaacactctagactcttaagcaaacataactttgttgaaagagaacatatttgcttcttattcctagacagggtctaatcaatgataatcaagtaagatcacatgtgatattgggttgtctacattaactaaatgaatactctgccgcgttgctgcgggaaattaagttgcataatatgtacaaataagatgaaatatgaatattaaaactaaaacaaattgatacttatgagtttgaggcctaaaaatgattgagattacttggtgtaatgagagaagaaagaagagaaaatttgaaccatatatctattatccaatggctagaaataattggggtaatgtagtctaataagaggagagaaatatcattaactacacttagtggagatgaactatataagtatataggataacttgaaattaatccacctatggaaaattaacaaaattattacaaaaatgaagtatcaagagaattaatacagtattaatgcttaaaagatattgtgaataatgcaatccaaactgaaaatttatcattagtcccggatatatacagacgttgctacagttcagtcaacagcaggaatcaactcaatactgtataaccaaatagctgaacaggtatattatgcggttatgagtttgtatgtcctacgcgagttggaccagtaggcctccgagcatagttagaccaattaatgcccgcaaatatatatccattttattattttgggctaacttataagagaatatttgtatttttctgaatcaaatagactggaagtctggaaccctaatagcgtgtgagacagtgagagccagagttaactcattgccgactcatctatatacggctagatgcaatactacaagagtcttgttgtgaaaacagcatgcaagtcgctgcgagctctattaatcaaagcagagttctgaacttcgtgcattggattaagatggaggaaaccaactttacaattctactgcttatagttaaaaagaattaaaatatctcccgagtcacttcaaatatgactactgtttgtctgtgtagacgttcatcgtccaaagagcagtaggagagtattttactaatttgaagtacggagagttttctaaattggcacccaaacaaatatgaaagaactagtgtcttgctactcctaaacgacaagcatttataaatattacccatcgtaccaatggagtaggctcaatattcttattggcgcagtaggtaactacttgcttagctttaacaagaaagccagtcgatctattgccttgtgatgaattgtaagtggttgcatttgccgctaattatgccagcttaaggcatgctaattaaagtaacatcttaattaaagttcgaagaggatttgtcatgtttcccaactaggttcatgaaagcatctgtttaaagctaaatcttggaaaagtcttaagaaggattaattagcataactacagtaccctgcaggaacctaatggagttgatttccaaataagacgtttaatgacgtacgagaaacgaaaaaaaaaatcagattaatccatcggctcgtgtactcccaccccaaacttgataccttgaaatccaaacactgttacctcacgtgaagctctactcctatgtcttaactcactgatcaatggttagagtgagaaggatttcaaaatatgtgatactaatgactcttatctagagatgtggttgctagcattatggggatgcccaacacactacccttattggattaaatcagcgaggagttaattaagttaattagtcgttcattcatagaattagaatagagtataagctgataatcactgatcatatggggagtctgattagtagatataaggatgcccacaaaactgaagaaaatttataacagccagatcaaactctattcgtatgtagtgaggaaaaaggagagataagaaaatttttaacttaaataatatataagaactggaattaaccatcaaactctaagatttgcatgttgacttaacaaagcttgcataacaatgcattaatagtaaatcattgtcgaaaacatcaagaaggataaatatccttcagatgatatggtatacaggaagcatccaacgttttgcttcttagttctaaatttctaatgtctgtttcttcaggaaccatatgcacatcccaagaagaacctgacagaaaaggtagaacccagcaactaaagcgctaactaggatgaacctttagcttataagttcttttttttcctgttaactcctctctacctcttactaagtcttaacatcttaacagacctccgatgtaatgttgtaacctttgtacctcccctctgaactaagaaaatcgaatgagttaagtgggaaactctcccccaaggtgacttttcgataaaaaagaagcagcatgaaaccagtctgtaatcaggctagctagaagcatggatgtttcttcagaaaccatgtatatctcaaaaagaaccttataggaaaggtagaacccagcaactaatgaaccattagattgaactaatgacagccgggaattaagaagtaaagattaaaggccagccctagcttataagtttgttctagtaaaatcttttcgttctgaaaagcatggcatgcatcagcaaagaatccaagaaagctagaggcagacgaaccagcgaaaagggttccaacaagtcaccagcagcttaagatatgaactcctccatctcccgatgcatcccgtttcatcttctcccttaatatgcttagttgcctcaagagaaagagatggccagggagagagaaagaagatctaaacgagcccagaattaatatggggaatagtgaagaaagaagaggcacacacaacacaagcagcaagttcagtagaattttagatgaacacaagcctggtctttaatccccaaataatcccaggtccatcaaatctacgtactagagttcctagctaatcacccctctcccctttgggtgcaaagctagcttgtcgccaagcaagcagcacccatcggcagggccaaaaaaaattccccaaatagcgcagcagcaacgccctctccagcgaaagcggagcataaaattaccctcgtacgggcactatagctacagtgcacagatgcaacgcatctcacctcacgccgtcagctcaaagcctgaaatagcaaaacacgctgcctcctccatcgccggcaagcaatcaacaatcgcagcagaaattcaaacagattattggggataaccccgaaacacacgcaacaaaattaattcgagcaatcaggacagatcgaattaatcacacacagaattcaaaggcaatcgatcgatacgaacagaacggaaacgggaacacatcatgtagcgcaaggattgctcgattaagcgaaaagaactgaaagcacacgtacgtacgtacgtaccatgagtcggtggcgtactcgtagagcttgcccttggtggagaagatgatgagcgcgacctcggcgtcgcagagcacggagatctcattcgccttcttgagcagccccgacctgcgcttggagaaggtcacctgccggttgatcttgttctcgatccgcttcagctgcaccttgccccgccccatcttcctcctgttcttcctcctcctcctcctcctcctccctccctccctctctctctctctacctccaaccaaaattaaccctacccacctcgctatcagcgacgaccactagccctatagccacacctatccccacacggcaactactggtggtggtggctgctggctatccgcctatcccctagccccggcccccatcacgtggacacggcgagacggcggcggaatgcgtcgcgcgcgatgggggggaccgatcgatcgatggatggatcgatcgagtgggggagacgacgacgacga
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| CDS seq | atggggcggggcaaggtgcagctgaagcggatcgagaacaagatcaaccggcaggtgaccttctccaagcgcaggtcggggctgctcaagaaggcgaatgagatctccgtgctctgcgacgccgaggtcgcgctcatcatcttctccaccaagggcaagctctacgagtacgccaccgactcatgtatggacaaaatccttgaacgttatgagcgctactcctatgcagaaaaggtccttatttcagctgaatctgacactcagggcaactggtgccacgaatataggaaactgaaggctaaggttgagacaatacagaaatgtcaaaagcacctcatgggagaggatcttgaatctttgaatctcaaagagctgcagcagctggagcagcagctggaaaattcgttgaaacatatcagatccagaaagagccaactaatgctcgagtccattaacgagcttcaacggaaggaaaagtcactgcaggaggagaataaggtcctacagaaagaaaacccttgctccttcctacagctggtggagaagcagaaagtccagaagcaacaagtgcaatgggaccagacacaacctcaaacaagttcctcatcatcctccttcatgatgagggaagcccttccaacaactaatatcagtaactaccctgcagcagctggcgaaaggatagaggatgtagcagcagggcagccacagcatgttcgcattgggctgccaccatggatgctgagccacatcaacggctaa
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| Protein seq | MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKENPCSFLQLVEKQKVQKQQVQWDQTQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAGQPQHVRIGLPPWMLSHING |
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| Function | MADS-box transcription factor 14 [UniProtKB/Swiss-Prot:Q10CQ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0012320 | OsLiXu_Ung0012320.01 | ChrUN-Ctg94 | 479936 | 490440 | - | NAM | ||
| CDS seq | atggggcggggcaaggtgcagctgaagcggatcgagaacaagatcaaccggcaggtgaccttctccaagcgcaggtcggggctgctcaagaaggcgaatgagatctccgtgctctgcgacgccgaggtcgcgctcatcatcttctccaccaagggcaagctctacgagtacgccaccgactcatgtatggacaaaatccttgaacgttatgagcgctactcctatgcagaaaaggtccttatttcagctgaatctgacactcagggcaactggtgccacgaatataggaaactgaaggctaaggttgagacaatacagaaatgtcaaaagcacctcatgggagaggatcttgaatctttgaatctcaaagagctgcagcagctggagcagcagctggaaaattcgttgaaacatatcagatccagaaagagccaactaatgctcgagtccattaacgagcttcaacggaaggaaaagtcactgcaggaggagaataaggtcctacagaaagaaaacccttgctccttcctacagctggtggagaagcagaaagtccagaagcaacaagtgcaatgggaccagacacaacctcaaacaagttcctcatcatcctccttcatgatgagggaagcccttccaacaactaatatcagtaactaccctgcagcagctggcgaaaggatagaggatgtagcagcagggcagccacagcatgttcgcattgggctgccaccatggatgctgagccacatcaacggctaa
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| Protein seq | MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKENPCSFLQLVEKQKVQKQQVQWDQTQPQTSSSSSSFMMREALPTTNISNYPAAAGERIEDVAAGQPQHVRIGLPPWMLSHING
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0012320 | OsLiXu_Ung0012320.02 | ChrUN-Ctg94 | 480416 | 490182 | - | IsoSeq | ||
| CDS seq | atgagatctccgtgctctgcgacgccgaggtcgcgctcatcatcttctccaccaagggcaagctctacgagtacgccaccgactcatgtatggacaaaatccttgaacgttatgagcgctactcctatgcagaaaaggtccttatttcagctgaatctgacactcagggcaactggtgccacgaatatagga |
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| Protein seq | MRSPCSATPRSRSSSSPPRASSTSTPPTHVWTKSLNVMSATPMQKRSLFQLNLTLRATGATNIG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | ChrUN-Ctg94 | 481509 | 481615 | - | OsLiXu_Ung0012320.01 | OsLiXu_Ung0012320.02,OsLiXu_Ung0012320.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.307983 | 0.0 | 5.841261 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0752800 | SBH | 0.000000 | 0.0 | 26.036764 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g54160 | SBH | 0.000000 | 0.000000 | 4.412238 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0752800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035040 | SBH | 0.000000 | 0.000000 | 30.003639 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034710 | SBH | 0.000000 | 0.000000 | 22.836096 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0034800 | SBH | 0.000000 | 0.000000 | 56.111012 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035110 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034680 | SBH | 0.000000 | 0.000000 | 116.304970 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0532100 | SBH | 0.0253515 | 0.062101 | 52.4616335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034460 | SBH | 0.000000 | 0.000000 | 9.219047 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0531200 | SBH | 0.0200135 | 0.3700575 | 57.920042 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0034880 | SBH | 0.000000 | 0.063056 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0034920 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034620 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0034720 | RBH | 1.837163 | 0.0 | 4.323576 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034660 | SBH | 0.061321 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034470 | SBH | 0.081573 | 0.000000 | 25.955439 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034310 | SBH | 0.000000 | 2.599812 | 60.933701 |
