Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0005180 | OGI:01009140 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg50:254945-262857 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcaaatatgccaattctctatagcacgcagtgcaaagtgtgcaacatacagcataacaggctaacagcaaacgcaaaaagagtgcaatttgaaacaagctggtaaattttggatcaatcattcaataatttaaccaggtaaaatctagaattcttggtagaagactacagttacaacaaatgatgggcagtgtaatagtagttctttccaacatgtcctcatctacagacttctactaaaagagtagcaaatgtgagctatttaggcagatccttaagccacaagtgacaaattcaagaaagctcttgagcatcaccattatgcagccttagcctttgccaatgccttcttccgttgggcaagcatgtaggtgaacatgtgaggcgatcctgcaacgcagtattcttgtcagaacctatcaaatcccagttactaagaaacaacaattgcaattataaaaataatttcaatcactgaataaaggacgactgcaaggcaggaggggataccgggcacgtagacggcgagagaaagaatggatgcataggagaaatcaaaggagaagttccatttgttgggcatcctaaggcaatatttctctgttgcctgcatagcagtcacaggaaaggagcagttaaattacgcattacgcattctgcaatgagcctgaacaacatggagatcttcatttctgaagttcattcttgttaccttcatgtaaggcaaggcgatgtagattaaaccgacctcactgctgataccagtaggatacaataccataaaggtgctatacctgtacaaaatcagcaccaggtttaagaaaagaagttatgaaagaaaaagaaaagcattctctctaaatttatgctaaataatgatgtatcttctttactaacctcagccataagagccaggaaggggcaaatccgaatgtctccttcatgccaaagaaggaatatctaatgatctacaaggaaccacaaatatttccatcacgttatgctatcaaatgcacaatattttaaatattggtgtgaataagcttagcccaggagaaatcaaaattataatttggaaaatgtcgtgtctctttaagaagtgagtcttcaaaatatacctcagtgatggaccagcttatgaccaaggaagtaacaaggatatgtgaatgtgtctgcaagacaaatgtaacaaagggatcaatcaatatatatgtcatgaaaccatgtgttaagctacactacaagcatacaactaacagaaaactagggatgcaaaagtaaagacactgcatttgcatatcagtaccagtagttatgccatttagtaacttgtacaatcatcaccattatttacttgatccacaaccagacataaaacagacaaactacctagtgtcctgccctcatataaaaatcaaattatatgatccgtattttctatttagacaatgctttaaacccaaaattatgtcatgtttcaatgtctcggcaaaacagtaaatgcttaggagaagtagcatgaacgtagcatgtcaacacttattagtgatagtcgatgatacctctggaaagctccacaggatgccccaggtaagaaacaaccttgatccaatttgtggaagagttgcagagactggagacctcaccaaacctttaaaacaaagtcagcatgttatacaggtgataaaaatgagaagtgtcataaaagtgaatttataaggtacaattgtttctctaatctaacaggacacttcctgtaaattgaaatatgtctttggcatgctttctaacgagaaagtctattactctatttccatggagtttgcgtgctgcacgctatagataggaaccgtacaattccaaatgatgaccaggatagtgaaaataacataagtagaagagaagaacaacttcttacctacaagcccatgaagaatctgagccaccagcaacgccatcgccaaacaaacacaaaaatgctcagtacctcacaaaacacaatttgcaaagaaatgaaatatacatcggtcggcattcttcgccatcccggcgaaaaaaaaaagaaatgaaataaacatggaatgctcgttcattctatgttcaccgcggactcgttcagccgctccgtgcaaagaatataaatgcttccttatctagggaactacaaggaatataacacaaagtactgctagggcagcagaaatttttcttttctttttagcagaattatcgggggagaggatccccaccatcaggcagcagaaacataacattgaagttgaattaattgcagtatattttgctataacactggtaatatttctctcaggctaaatgtttggttgatttttagaacgcaaaaggggattaatttttttttccctctgtgccattgctcaacaggtagcaaccctaattgggtagacggaaaattcaaaatgaagtcagagctgcccaaattatacaagctcgagctaaaacctactccctccataaaaaaaaagacaaaccctggatttccgtgtccaacgtttgaccgtccgtcttatttaaaaaaattatgaaaaaaatttaaaaaataagtcacgcataaagtattaatcatgttttattatcgaacaacaataaaaatactaattataaaaaatttcatataagacggacacaaccgaacgttggacacggaaaccaggtttgtcTtttttttttttacggagggagtacagttttactcgattaaaattcagaaataagtcagagcgcacagactagcagaaaaaccagacctccaagaaggcggcggtctgcgcgaactgcagcggccgctcgacggcggcgtagacggcctcatggccgctctccagcagcgtcgtgaccgcgtagtacagcacctgcgccctgcaagatccaagaaacccccctaaatcaagccaagaaaacgagagatccaaacaccagcaggcggcggcggcgcgaggcggcggagtaccatccgaagaagacggcccagttgtagacggagaggtagagccgccgcaccgccgaaccgacgcccgccatcgccgagcactcagcagcagctagcaaggaggaggaggaaccgaggaacgcgaggtctggacaaagatggacaaggacagtggcttggctttaatgggcgcgtggactgaatctactacgctgttgattactgctcgcattcgcatcagcagatcagatcagaggatgcaatcgcaatcagtaggctgcttgctccgatttgagaattccggtggatgggaggctggccaaccgaccaaccactgatcaaactgaattcgcaatgaatcggagtggatgtgggggtggcggtggcagttatggcagctgcagctgactgagccggctctcccgccaatatcatccatgtgatctgctgcaaattcagttcagtactgcaactttcaattttatcttcagaagagttcagacacgcaggttcagtaaaaaaaaatctctcatttctctctctgttctcaatcacaagtattatgctgttaacctgatggcctgtcaaaagaaaagaaattgtgtgtctgtgtgtgtatatcagcatctacaactaccagaattaatcagtgatacataggaagcacatcaagaaacagaataaagatgataattttgttcagctgttacatgagttgttttcaatagctttccaagtgatagaactgctcagccaactcaactgtctatcagaatatcagttagttcgactaactgaaaatgaaatagcctttacagaatgctcctctgtacttcacaatcatattatccaagacaatgttgcatgacctgcctacccaaacaaacaaacgaactctatagattacttgcattcttttcagctgtatgttgtattagattacaagaatggactttaaagaacaccataacttgactgaatacagaagatgaacaatcaattccaagctacaatgcagcagagaggatccccagttcggtgcagagtggctccagcccttcctcttccagcaaggaaagagcggcaagtccatagtaagaatggtagatatccgggaattgatcgtacaaaaactttgtaaaacctccatactgttgcaatggtaaacaagggcatacatgatcagtaaagatgcaacttgatcaatgtgagaaattaagctgattagagaggaagtcattacaggtgattggcaatagagcaaaaaacttcgcaaagcaccatgatcaatgaagcggtatgcaccgatgatctttaggacacctccaatcctgcagagtgttgattggcagcaagacagattacccaaatttgctatttgattgtcaggcaattagtatatataactctgaatggtgtatttaccaaaatgcatagcatgtgtcactggatttgttccttcttccttgaaaacctccgtctgccgcttgtctctatatgataatagtgaaaacagttaagattccctactagtaaagtcgtcctagtccttattaatcatttctaactaaatccgtttatgattcacaTtttttttactctacataagggagattttaaaaacaactggatggtgtggtgtcattgagcaagctgcacttctccatcatgaataaatgaaaattgaatggttgatgcatatatctactaaattagaaacatttaaaacgggttggtgtactgcatatagtgtctgtccagttttggaaatatatgttagtcctataaatcacatcaaagggcagattttgatggtaatagcagatatatatggttgagcagaatttaacctgaagacaccactccaggagcaagcgtacatcaattgatgatggttcttgtaaatttgatgccaaatcaacttgaatgaaacccatcaggcacaaagctgcaacagcacagaatgtccctccacctgactcactaacacaaagacaaacaatgagtacccataaccgactccaaaaaaataaaacaaaaatttagctgaattattgcattctgaaactctgaagaaaactgccacatgaaatgacaaactcagtaggacaagaagcacatcaaaggttaaaagaagctgtaccatgagattctgaaccaggaaccaagccaaagccaccatcgtatgactgcatgtggtagaaacaagaattaaggattttaaatagcatggtgcaaaacactggtgtctcaaaaccaagtgcatcaggaattgttgtaagccaacctggcaactaagaatgtattgcttggccttttccttgtccattcctgtccaatcttttagcatcgagcagattgcagctgagaagacaacacaagtgtgtcaagttatttcaaacaaagataaaattgaaagcatactaaatataaatgacagtgcaacccacctgcacagtatacaaagcgtaggtctgtttccgcaccaatatgagtaggcatgaagctaaaaaaaaaatgtttctcaagttggccaataagataatgcatttaagcggtgcgtggagtttagttgtttgcagaatggaaccatggaagccatcttagtgaaatcaatgaaatgctcacaggcaagcaagattgcattgcacatgcacaaacacctctatcacatgcatgcagttaggatcacagcacattaattaacattctgattgaacaagcttgaagactgaccaacaatacagagatataccagaaaggaggtatttaccaatatcaagtttgtcgaacgacatggcatgactaaattcatgcagagaaaacatatgcaaatggaaaggtagcaatcaacacatacaaaaaataatcaaggaggtgggccaactatggggtattatgaaatcttaagacagaatgtgagttggctgaaactcttttggtggtacagttaaaactaaacacaggtagcagatgtaaatgcatagatatttttggaggataattacaagaataattagcatggagaccaaaactaaaatgcataccttccatctggctgttggaggtttctcattgaggacaaaagaaccttgttatcaatgtttgctaaatcataacctacaatcttcaggatagcaagggcagaataagtgcttgcaagatgactaccattgtggcaagggtcctgaggaagggcatgaattcatatttcaaactgtcagaatgtaaaaattaaatgacaaattgatatgtgtgaaaaaaaaagggttgacttgagaattagccacatctaccttcatgttagttgagggaaactgagttgttctagagccacagaatccataaaattgtcctaaaaacatataaattgtcatataatgaatatattgcatctgaaaaatatgaattagctatcttgagagctttattacataagtactgaggaaaactcaccattatctaattcattgtctgtcttaggatgtacttgaaaagacaaaatccatttggctatttgatccttgttaacctaaagaaagtataaaagggcaaacaagtacacaactcatcaaattactactcagtcaactcagtatattacttcttcctgaagagtcaactcagtcaaggcacaaagtgaacttaaattcccacaataaatatttcagctagcaaccaggcatggttacttgttttaatacataatacatacaggtacaattttcatgataagactggtaaaaaaatatttgcatgaggctataagtttttttagaagttactagtaatttgagaatggagatatcaggaggctatcatgtttttgttgtttacatgagcaaggcatcaagtatgatgaacttaaatcataaccaactaggcggctcctaactgtgcagagcattaaggcaactgcccatggacaagacaaagacgaatggaatttagaccgaattaagggacgtggaccaattcgttgctacagaaacatcacatgggcccctttcctcttagtttggctagaaatcgaaagcgaatgtagttatgtgatattgtgatctagttgccggacagatgcaaattgcctaaccgcaataatctctaactgctttgagtagactggttactggtcagtgaccacttatgggctaaagtgcttaaaccttgcagctagtggttgttctttacaggaattccAaaaaaaaaaaaatatattgaaaagacccttccacacttggcattctgctatccacaaactttggatccctgtgtttgtcacaataaagatcaatttcaactcccattatggatacagcaactaatttatctctgaatatactaccaatagccatccttgaggtttcaaaatacttcatggtaccataagtgcaccaaatctgctgattgattttattcctacagatgcaactttgcttccactaaatgcaagcaaagcgaccacacaaggtaaagtaaagatccaagctttgcacaagggcacatctagtctagactagagttcaacaaataactAaaaaaaaaacgaatttacgcgtaattcaggaaacggatcgagaggataaccgctagggcagatcaggcggagagcggggatcttacactgtcgagctcacgaaggagagataggccggcgacggcgaagtaggcgagggtgaggtggttgacctcctgcgaggcgtagtccgcggggagctccgacgccatagcctccagaaacagcacgtgccgctcgcgcgcgaactccggctgctccggctccgccatcgccggccctcgctcgctcgccggggaaccctcgtctctcgtgccggagagaataaccgagccgctagtgcggatctggcggaggaggagagctcggcacggcgacggcggcggcggcggcgggcgctgctggtgctgggaatttgggatgcggac
More
|
||||||||||
| CDS seq | atggcggagccggagcagccggagttcgcgcgcgagcggcacgtgctgtttctggaggctatggcgtcggagctccccgcggactacgcctcgcaggaggtcaaccacctcaccctcgcctacttcgccgtcgccggcctatctctccttcgtgagctcgacagtgttaacaaggatcaaatagccaaatggattttgtcttttcaagtacatcctaagacagacaatgaattagataatggacaattttatggattctgtggctctagaacaactcagtttccctcaactaacatgaaggacccttgccacaatggtagtcatcttgcaagcacttattctgcccttgctatcctgaagattgtaggttatgatttagcaaacattgataacaaggttcttttgtcctcaatgagaaacctccaacagccagatggaagtcatgccatgtcgttcgacaaacttgatattggtaaatacctcctttctggtatatctctgtattgttgcttcatgcctactcatattggtgcggaaacagacctacgctttgtatactgtgcagctgcaatctgctcgatgctaaaagattggacaggaatggacaaggaaaaggccaagcaatacattcttagttgccagtcatacgatggtggctttggcttggttcctggttcagaatctcatggtggagggacattctgtgctgttgcagctttgtgcctgatgggtttcattcaagttgatttggcatcaaatttacaagaaccatcatcaattgatgtacgcttgctcctggagtggtgtcttcagagacaagcggcagacggaggttttcaaggaagaaggaacaaatccagtgacacatgctatgcattttggattggaggtgtcctaaagatcatcggtgcataccgcttcattgatcatggtgctttgcgaagttttttgctctattgccaatcacctgtaatgacttcctctctaatcagcttaatttctcacattgatcaagttgcatctttactgatcatgtatgcccttgtttaccattgcaacagtatggaggttttacaaagtttttgtacgatcaattcccggatatctaccattcttactatggacttgccgctctttccttgctggaagaggaagggctggagccactctgcaccgaactggggatcctctctgctgcattgtagcttggaattgattgttcatcttctgtattcagtcaagtcatgcaacattgtcttggataatatgattgtgaagtacagaggagcattctgtaaaggctatttcattttcaacctcgcgttcctcggttcctcctcctccttgctagctgctgctgagtgctcggcgatggcgggcgtcggttcggcggtgcggcggctctacctctccgtctacaactgggccgtcttcttcggatgggcgcaggtgctgtactacgcggtcacgacgctgctggagagcggccatgaggccgtctacgccgccgtcgagcggccgctgcagttcgcgcagaccgccgccttcttggagattcttcatgggcttgtaggtttggtgaggtctccagtctctgcaactcttccacaaattggatcaaggttgtttcttacctggggcatcctgtggagctttccagagacacattcacatatccttgttacttccttggtcataagctggtccatcactgagatcattagatattccttctttggcatgaaggagacattcggatttgccccttcctggctcttatggctgaggtatagcacctttatggtattgtatcctactggtatcagcagtgaggtcggtttaatctacatcgccttgccttacatgaaggcaacagagaaatattgccttaggatgcccaacaaatggaacttctcctttgatttctcctatgcatccattctttctctcgccgtctacgtgcccggttctgacaagaatactgcgttgcaggatcgcctcacatgttcacctacatgcttgcccaacggaagaaggcattggcaaaggctaaggctgcataatggtgatgctcaagagctttcttga
More
|
||||||||||
| Protein seq | MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSHAMSFDKLDIGKYLLSGISLYCCFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLYCQSPVMTSSLISLISHIDQVASLLIMYALVYHCNSMEVLQSFCTINSRISTILTMDLPLFPCWKRKGWSHSAPNWGSSLLHCSLELIVHLLYSVKSCNIVLDNMIVKYRGAFCKGYFIFNLAFLGSSSSLLAAAECSAMAGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFDFSYASILSLAVYVPGSDKNTALQDRLTCSPTCLPNGRRHWQRLRLHNGDAQELS |
||||||||||
| Function | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B [UniProtKB/Swiss-Prot:Q5ZEJ0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0005180 | OsLiXu_Ung0005180.02 | ChrUN-Ctg50 | 255240 | 262813 | - | NAM | ||
| CDS seq | atggcgggcgtcggttcggcggtgcggcggctctacctctccgtctacaactgggccgtcttcttcggatgggcgcaggtgctgtactacgcggtcacgacgctgctggagagcggccatgaggccgtctacgccgccgtcgagcggccgctgcagttcgcgcagaccgccgccttcttggagcatttttgtgtttgtttggcgatggcgttgctggtggctcagattcttcatgggcttgtaggtttggtgaggtctccagtctctgcaactcttccacaaattggatcaaggttgtttcttacctggggcatcctgtggagctttccagagacacattcacatatccttgttacttccttggtcataagctggtccatcactgagatcattagatattccttctttggcatgaaggagacattcggatttgccccttcctggctcttatggctgaggtatagcacctttatggtattgtatcctactggtatcagcagtgaggtcggtttaatctacatcgccttgccttacatgaaggcaacagagaaatattgccttaggatgcccaacaaatggaacttctcctttgatttctcctatgcatccattctttctctcgccgtctacgtgcccggttctgacaagaatactgcgttgcaggatcgcctcacatgttcacctacatgcttgcccaacggaagaaggcattggcaaaggctaaggctgcataatggtgatgctcaagagctttcttga
More
|
|||||||
| Protein seq | MAGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEHFCVCLAMALLVAQILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFDFSYASILSLAVYVPGSDKNTALQDRLTCSPTCLPNGRRHWQRLRLHNGDAQELS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0005180 | OsLiXu_Ung0005180.01 | ChrUN-Ctg50 | 255240 | 262857 | - | NAM | ||
| CDS seq | atggcggagccggagcagccggagttcgcgcgcgagcggcacgtgctgtttctggaggctatggcgtcggagctccccgcggactacgcctcgcaggaggtcaaccacctcaccctcgcctacttcgccgtcgccggcctatctctccttcgtgagctcgacagtgttaacaaggatcaaatagccaaatggattttgtcttttcaagtacatcctaagacagacaatgaattagataatggacaattttatggattctgtggctctagaacaactcagtttccctcaactaacatgaaggacccttgccacaatggtagtcatcttgcaagcacttattctgcccttgctatcctgaagattgtaggttatgatttagcaaacattgataacaaggttcttttgtcctcaatgagaaacctccaacagccagatggaagcttcatgcctactcatattggtgcggaaacagacctacgctttgtatactgtgcagctgcaatctgctcgatgctaaaagattggacaggaatggacaaggaaaaggccaagcaatacattcttagttgccagtcatacgatggtggctttggcttggttcctggttcagaatctcatggtggagggacattctgtgctgttgcagctttgtgcctgatgggtttcattcaagttgatttggcatcaaatttacaagaaccatcatcaattgatgtacgcttgctcctggagtggtgtcttcagagacaagcggcagacggaggttttcaaggaagaaggaacaaatccagtgacacatgctatgcattttggattggaggtgtcctaaagatcatcggtgcataccgcttcattgatcatggtgctttgcgaagttttttgctctattgccaatcacctgtaatgacttcctctctaatcagcttaatttctcacattgatcaagttgcatctttactgatcatgtatgcccttgtttaccattgcaacagtatggaggttttacaaagtttttgtacgatcaattcccggatatctaccattcttactatggacttgccgctctttccttgctggaagaggaagggctggagccactctgcaccgaactggggatcctctctgctgcattgtagcttggaattgattgttcatcttctgtattcagtcaagtcatgcaacattgtcttggataatatgattgtgaagtacagaggagcattctgtaaaggctatttcattttcaacctcgcgttcctcggttcctcctcctccttgctagctgctgctgagtgctcggcgatggcgggcgtcggttcggcggtgcggcggctctacctctccgtctacaactgggccgtcttcttcggatgggcgcaggtgctgtactacgcggtcacgacgctgctggagagcggccatgaggccgtctacgccgccgtcgagcggccgctgcagttcgcgcagaccgccgccttcttggagcatttttgtgtttgtttggcgatggcgttgctggtggctcagattcttcatgggcttgtaggtttggtgaggtctccagtctctgcaactcttccacaaattggatcaaggttgtttcttacctggggcatcctgtggagctttccagagacacattcacatatccttgttacttccttggtcataagctggtccatcactgagatcattagatattccttctttggcatgaaggagacattcggatttgccccttcctggctcttatggctgaggtatagcacctttatggtattgtatcctactggtatcagcagtgaggtcggtttaatctacatcgccttgccttacatgaaggcaacagagaaatattgccttaggatgcccaacaaatggaacttctcctttgatttctcctatgcatccattctttctctcgccgtctacgtgcccggttctgacaagaatactgcgttgcaggatcgcctcacatgttcacctacatgcttgcccaacggaagaaggcattggcaaaggctaaggctgcataatggtgatgctcaagagctttcttga
More
|
|||||||
| Protein seq | MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLYCQSPVMTSSLISLISHIDQVASLLIMYALVYHCNSMEVLQSFCTINSRISTILTMDLPLFPCWKRKGWSHSAPNWGSSLLHCSLELIVHLLYSVKSCNIVLDNMIVKYRGAFCKGYFIFNLAFLGSSSSLLAAAECSAMAGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEHFCVCLAMALLVAQILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFDFSYASILSLAVYVPGSDKNTALQDRLTCSPTCLPNGRRHWQRLRLHNGDAQELS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0005180 | OsLiXu_Ung0005180.03 | ChrUN-Ctg50 | 255240 | 262813 | - | NAM | ||
| CDS seq | atggcggagccggagcagccggagttcgcgcgcgagcggcacgtgctgtttctggaggctatggcgtcggagctccccgcggactacgcctcgcaggaggtcaaccacctcaccctcgcctacttcgccgtcgccggcctatctctccttcgtgagctcgacagtgttaacaaggatcaaatagccaaatggattttgtcttttcaagtacatcctaagacagacaatgaattagataatggacaattttatggattctgtggctctagaacaactcagtttccctcaactaacatgaaggacccttgccacaatggtagtcatcttgcaagcacttattctgcccttgctatcctgaagattgtaggttatgatttagcaaacattgataacaaggttcttttgtcctcaatgagaaacctccaacagccagatggaagtcatgccatgtcgttcgacaaacttgatattggtaaatacctcctttctggtatatctctgtattgttgcttcatgcctactcatattggtgcggaaacagacctacgctttgtatactgtgcagctgcaatctgctcgatgctaaaagattggacaggaatggacaaggaaaaggccaagcaatacattcttagttgccagtcatacgatggtggctttggcttggttcctggttcagaatctcatggtggagggacattctgtgctgttgcagctttgtgcctgatgggtttcattcaagttgatttggcatcaaatttacaagaaccatcatcaattgatgtacgcttgctcctggagtggtgtcttcagagacaagcggcagacggaggttttcaaggaagaaggaacaaatccagtgacacatgctatgcattttggattggaggtgtcctaaagatcatcggtgcataccgcttcattgatcatggtgctttgcgaagttttttgctctattgccaatcacctgtaatgacttcctctctaatcagcttaatttctcacattgatcaagttgcatctttactgatcatgtatgcccttgtttaccattgcaacagtatggaggttttacaaagtttttgtacgatcaattcccggatatctaccattcttactatggacttgccgctctttccttgctggaagaggaagggctggagccactctgcaccgaactggggatcctctctgctgcattgtagcttggaattgattgttcatcttctgtattcagtcaagtcatgcaacattgtcttggataatatgattgtgaagtacagaggagcattctgtaaaggctatttcattttcaacctcgcgttcctcggttcctcctcctccttgctagctgctgctgagtgctcggcgatggcgggcgtcggttcggcggtgcggcggctctacctctccgtctacaactgggccgtcttcttcggatgggcgcaggtgctgtactacgcggtcacgacgctgctggagagcggccatgaggccgtctacgccgccgtcgagcggccgctgcagttcgcgcagaccgccgccttcttggagattcttcatgggcttgtaggtttggtgaggtctccagtctctgcaactcttccacaaattggatcaaggttgtttcttacctggggcatcctgtggagctttccagagacacattcacatatccttgttacttccttggtcataagctggtccatcactgagatcattagatattccttctttggcatgaaggagacattcggatttgccccttcctggctcttatggctgaggtatagcacctttatggtattgtatcctactggtatcagcagtgaggtcggtttaatctacatcgccttgccttacatgaaggcaacagagaaatattgccttaggatgcccaacaaatggaacttctcctttgatttctcctatgcatccattctttctctcgccgtctacgtgcccggttctgacaagaatactgcgttgcaggatcgcctcacatgttcacctacatgcttgcccaacggaagaaggcattggcaaaggctaaggctgcataatggtgatgctcaagagctttcttga
More
|
|||||||
| Protein seq | MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSHAMSFDKLDIGKYLLSGISLYCCFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLYCQSPVMTSSLISLISHIDQVASLLIMYALVYHCNSMEVLQSFCTINSRISTILTMDLPLFPCWKRKGWSHSAPNWGSSLLHCSLELIVHLLYSVKSCNIVLDNMIVKYRGAFCKGYFIFNLAFLGSSSSLLAAAECSAMAGVGSAVRRLYLSVYNWAVFFGWAQVLYYAVTTLLESGHEAVYAAVERPLQFAQTAAFLEILHGLVGLVRSPVSATLPQIGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRYSTFMVLYPTGISSEVGLIYIALPYMKATEKYCLRMPNKWNFSFDFSYASILSLAVYVPGSDKNTALQDRLTCSPTCLPNGRRHWQRLRLHNGDAQELS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0005180 | OsLiXu_Ung0005180.04 | ChrUN-Ctg50 | 258684 | 262813 | - | NAM | ||
| CDS seq | atggcggagccggagcagccggagttcgcgcgcgagcggcacgtgctgtttctggaggctatggcgtcggagctccccgcggactacgcctcgcaggaggtcaaccacctcaccctcgcctacttcgccgtcgccggcctatctctccttcgtgagctcgacagtgttaacaaggatcaaatagccaaatggattttgtcttttcaagtacatcctaagacagacaatgaattagataatggacaattttatggattctgtggctctagaacaactcagtttccctcaactaacatgaaggacccttgccacaatggtagtcatcttgcaagcacttattctgcccttgctatcctgaagattgtaggttatgatttagcaaacattgataacaaggttcttttgtcctcaatgagaaacctccaacagccagatggaaggtatgcattttag
More
|
|||||||
| Protein seq | MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGRYAF |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0005180 | OsLiXu_Ung0005180.05 | ChrUN-Ctg50 | 254945 | 258173 | - | IsoSeq | ||
| CDS seq | atgcgaatgcgagcagtaatcaacagcgtagtagattcagtccacgcgcccattaaagccaagccactgtccttgtccatctttgtccagacctcgcgttcctcggttcctcctcctcct |
|||||||
| Protein seq | MRMRAVINSVVDSVHAPIKAKPLSLSIFVQTSRSSVPPPP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | ChrUN-Ctg50 | 255335 | 255456 | - | OsLiXu_Ung0005180.02,OsLiXu_Ung0005180.03,OsLiXu_Ung0005180.01 | OsLiXu_Ung0005180.05,OsLiXu_Ung0005180.03,OsLiXu_Ung0005180.01,OsLiXu_Ung0005180.02 | All |
| A3 | ChrUN-Ctg50 | 256882 | 257732 | - | OsLiXu_Ung0005180.02,OsLiXu_Ung0005180.01 | OsLiXu_Ung0005180.05,OsLiXu_Ung0005180.03,OsLiXu_Ung0005180.01,OsLiXu_Ung0005180.02 | All |
| SE | ChrUN-Ctg50 | 260419 | 260961 | - | OsLiXu_Ung0005180.03 | OsLiXu_Ung0005180.03,OsLiXu_Ung0005180.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.201687 | 0.0 | 0.638429 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0150100 | RBH | 1.321704 | 0.460248 | 2.773793 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05694 | SBH | 1.015577 | 0.401965 | 0.276768 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0150100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003630 | SBH | 0.122565 | 1.692992 | 3.954034 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003470 | SBH | 0.121827 | 2.770417 | 1.623763 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003610 | RBH | 1.347394 | 23.056200 | 12.605496 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003290 | RBH | 0.045135 | 1.180108 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003510 | SBH | 3.617102 | 22.207834 | 10.573362 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0046700 | SBH | 9.59436 | 7.9674395 | 9.0453085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003430 | SBH | 0.077591 | 1.861893 | 0.999840 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0048100 | SBH | 5.8668715 | 10.345772 | 22.733634 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003250 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003350 | SBH | 0.153574 | 2.889673 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003490 | SBH | 2.518417 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003530 | RBH | 0.306714 | 0.058413 | 0.113796 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003400 | SBH | 0.0 | 7.242541 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003570 | SBH | 0.280848 | 3.428406 | 2.858830 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003420 | SBH | 0.109494 | 21.563763 | 8.029791 |
