Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0001090 | OGI:99004240 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg30:147110-148666 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtattttgtccaactatacatgatgttaactgaggttcagttagctgaagcaaagagttctttttcccaacaacttgagcatgtgtatgcaattcaactgagaaatccaattctttgacatatgaaaccctgatctgctccaaaccagtacttgaaataacccaaatattcaggatgctactggaatgagcacaataggagcagacaagtgaaccatcaccaagctcccaaaatatccgcacttcccattcagtaaaaagcactgtagatggactccttttcacaccaaaatttagcccatctaaggaaatcagcaactcagcatcaagtatatgtctcaaatttccttgcataattaatagtaccatcatgcatattgttgaacgacaaattgttggccatggatagcagtttctcttctgaaccatatcagcacaggatagccacaaggaagatgattcaggaccacagaagactaatttatctttcttgctaacagctgctaagaaacatacatgcaaagcaatagcttcaggcatttcaacatcaccgaacaactcagtatattgctcgtctgctagcaatcttactcttggtacttgatacaagtttcatcgttttgatcatttcaccccagacagtcatactagctgtgttaacaaggttccaaccgatgtgtagtatgtccatagtaaacagaaggttgaaccatgactgaactggtggtggccatggtttcaactcagccattgttagaatcactgttccaattacctgaactcccatatcgaaaggctcccatgccaaggttacccgagttagtggtggccatggtagcatgaaatgcactcttgcccaatagagtttgaattttggaccagccataggcagcgaatcccatcctctaatcactccatcacggctggttggaggtggccatggcttcaattcaattccctccaaccttagcttctcattgagtagtgtcccaaataacaacacatatatagctgcttgacttctgtatgtttctagagaaggaggtgaccatggattaatatgaagatcatacatagtcatcaatgccttgttctcatgcagagtgcttttcatcgaacacatggtgggtctcggtctgtcctgcttagggctagcgattgacctcggcaagaagatatccattggctcgacagatattagaacgaccttgggtatacacttcatggtcgggaacacgaccacaacttgttccatgccatcattgacgtcgaggccgactgtcgaacacttcgcagacgtgacattggaaaggtccttgatgacaatgtagggggtttggtccttgtccccaccgtcactaagatgcaaggacactgctagagtaggctcgttgtcgaggtggcctgagctcgctgtcacatccgggctgctagcataggggcattctgtcgagcagttggtaggcagtgagggagatggtgccatgggtggtgaagatgatgcagccatgatgaccgtagtggtcgctttgatgctggtactgagctcctccat
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| CDS seq | atggaggagctcagtaccagcatcaaagcgaccactacggtcatcatggctgcatcatcttcaccacccatggcaccatctccctcactgcctaccaactgctcgacagaatgcccctatgctagcagcccggatgtgacagcgagctcaggccacctcgacaacgagcctactctagcagtgtccttgcatcttagtgacggtggggacaaggaccaaaccccctacattgtcatcaaggacctttccaatgtcacgtctgcgaagtgttcgacagtcggcctcgacgtcaatgatggcatggaacaagttgtggtcgtgttcccgaccatgaagtgtatacccaaggtcgttctaatatctgtcgagccaatggatatcttcttgccgagttggacaaaatactga
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| Protein seq | MEELSTSIKATTTVIMAASSSPPMAPSPSLPTNCSTECPYASSPDVTASSGHLDNEPTLAVSLHLSDGGDKDQTPYIVIKDLSNVTSAKCSTVGLDVNDGMEQVVVVFPTMKCIPKVVLISVEPMDIFLPSWTKY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0001090 | OsLiXu_Ung0001090.01 | ChrUN-Ctg30 | 147110 | 148666 | - | NAM | ||
| CDS seq | atggaggagctcagtaccagcatcaaagcgaccactacggtcatcatggctgcatcatcttcaccacccatggcaccatctccctcactgcctaccaactgctcgacagaatgcccctatgctagcagcccggatgtgacagcgagctcaggccacctcgacaacgagcctactctagcagtgtccttgcatcttagtgacggtggggacaaggaccaaaccccctacattgtcatcaaggacctttccaatgtcacgtctgcgaagtgttcgacagtcggcctcgacgtcaatgatggcatggaacaagttgtggtcgtgttcccgaccatgaagtgtatacccaaggtcgttctaatatctgtcgagccaatggatatcttcttgccgagttggacaaaatactga
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| Protein seq | MEELSTSIKATTTVIMAASSSPPMAPSPSLPTNCSTECPYASSPDVTASSGHLDNEPTLAVSLHLSDGGDKDQTPYIVIKDLSNVTSAKCSTVGLDVNDGMEQVVVVFPTMKCIPKVVLISVEPMDIFLPSWTKY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002550 | SBH | 0.000000 | 0.000000 | 0.598763 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002620 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0034100 | SBH | 0.4666395 | 1.7175915 | 0.5397375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0034000 | SBH | 0.466091 | 1.637512 | 3.5093985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002440 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002600 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002640 | RBH | 0.000000 | 0.238537 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002550 | SBH | 0.084869 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G024370 | SBH | 0.057705 | 0.656889 | 0.392671 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0024520 | SBH | 0.172748 | 4.325004 | 0.285309 |
