Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0006900 | OGI:12015420 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:5732937-5736275 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaataatcgacagttcacatttctgtttggttttctgtacatgttctcaatgattcatattgtgaagctcacaaaattaaaatactcaatcatacatatatcgtagatgcagacaacttgccccaacacattacaagaaccaagtggaggagctactacctggcaagtacgaactcattttactagatacagtggtgcctgaattattgctcagatcagagtgttcatagcttcaattacaaaaatttgcctgtctcagcactgttagagttgcatacataaatgaagtactctcatcgctgttttttcatatgccttccccatacaattaggattgtaattgcaaaggaaacaccaaaacccaatgcagtgaagaggactagtagaacatctatggatttctccgaaacatatggcatcacagttgactcttgtgggttatcacattgtttagataatggcggtccacacaaaccagtgtttccaagaaaagagttgttcgaaaatgtggaaaactgatatgaatttggtattcttccaaccaacgtgttataagacaaattcagtattgaaaggaagttgagtgatgctagctccttgggaatttcaccaaagagctcatttgaggagaggtccagtgactcaagttgattcagcctgccaaactgagttggaattggtcctgttagtgaattgtgagacatgttgagcccatgaagcagaacaagctccccgatagtctcaggaatggtgccatggaatgcattattcgagaaatcaatcagcacaagggtcctcaagatcttggaaattgtgatgtaattccctttgtatgtaactgcagcagtaaactggtatgtttgcccatggtaatattgattttccatgactaatgtatcattatcagatatggcattcatggacttgagcatcgtaaaccatgcttctggcaatgttccattgaagttatttgaggccatatcggcaattctgagctctgtaaattcacaactgtttccatcaactgtatatgaaggatccattatttgtccagtgaacttgttagacttgagggcaaggacttgaagtttaggaagtttgctcatccaacatgggaaggagtcactaatctcattgtttccaatgtcgaggatctccaagttcctgcaagcaactagagatctgggtatcctcccctcaaacaaattgccacttaaatctattgcctcaagtgcacaaccttccttgatgttatctggtattgttccaacaagtttattttccttcagatttaatatttgtaatgcagtgacatcctccattaaacaagatgggatcgaaccactcaagttattgtaagagagatcaatgagttgtagtctcggagcactacagattgatggaatatttccagacagtttgtttttggaagccttgaaagtaaaagtttcaccaaggtaagttgagtaatgaagaggcatggaggagaactggttgcttgaataatctaacatggtactaccttcttgtggtacaggtatgggcccttcaatgctgttgaaactgagatcaaagaagtcaatctcaagaggaagcagaggatctgatccaagacttgtaatgttattgtgtgatatgttcaggaggagaaagtacatgcctctccatgtctcccatgcccactgaggtatagctccctggattttgttatgcgaaaggtcaagagtggtgatctcatggagatgcttcaagatgttgggaaaggttgatatactgcaagatgctaaccttaagagttttatttttgggaagggcaccaacgatgaactgttttctccatgtagcacaagtagtttattgtttgagagattcaggacagataggtttttcagttttgtgaatgacgtgagttccaccgtgccagccaaattgttcgaatggagttgcagagattgcaactgagtcaaattaaagatctgcggaggcaccttccctgaaaacttgcagttgtacaatgctaacatactcaatttctttaagtttcctattgaggaaggtatctctccagacaatccacaatcagagaacttgagaacagtaagagaagttaggtttgatatccacggtgccatggatcctgttagctgtatcccagacacttctagcaaatccaggtatttgaggctacctagtgaagagggcagcattccagagaagccactggcaccaaggtccagcttcgtaagagatttgagattgcttatggaactcggtattatacctgtgaagttcgtgctactgataagaagattctctaacttactgtcctgtgagaaattgggcagactacctgataacccaggattattagtgatgttaattgttaccaacttcttgtgctggaagatgatgggaggaaacaatccttcaaacttgtttttggacagttgaagaacagtgaggttggagaagccagccaagaactctggcactgaacctgacaagtggttgtaatgaagctcaatcctagtgagcgaattcatggaagacaaggatgtgcagatgggacctgacaatgagcagtaaggtaaacttagaacctgaagcttaggtgtaaacttagctatgtcgtcacaccaccgttcgccgttgccggacatatccaccattcccatatggagctcctccaggttggtaaggtttgccagcaaggtctccatgtttggcactgagagctgccagaagttgtctgaagcgaacggcatcatcttgttctcgtcatcataataaatgatgtagaagcttgtggagaggtcaaggtacaccaagttcacaaggcttccgatgccagccggcacctcaccggcgatgttggtgtcagagaggtcaagatgggtgagctcggtgagattctcgaacccggttaccgggagctgggacatgctgaagttgttaccagagatgtcaaggtacctgagtgaggttaacctgaagagtgcagggctgatgctgccggcttgcaggttgtggccacccaagacgagcgaggtgacacggccatcttcgccgccaccgcagtcgacgccgtcccagtggcagcaatctgtgccggtgatccacgaccgaaatgcagtggagtagccgcccgccgtcttgttgaaggagttcttcagccggagcagcgcggaggcctggtccgggaggcactgaattaccggtgccgtcgcatcgtcggtgagcgcggcgatggcctggacttgcaggaggatgtgcagcatggtaagcaatggtttcgcgagatggtgaggacgaaccagcctcttggtggacgacgacat
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| CDS seq | atgtcgtcgtccaccaagaggctggttcgtcctcaccatctcgcgaaaccattgcttaccatgctgcacatcctcctgcaagtccaggccatcgccgcgctcaccgacgatgcgacggcaccggtaattcagtgcctcccggaccaggcctccgcgctgctccggctgaagaactccttcaacaagacggcgggcggctactccactgcatttcggtcgtggatcaccggcacagattgctgccactgggacggcgtcgactgcggtggcggcgaagatggccgtgtcacctcgctcgtcttgggtggccacaacctgcaagccggcagcatcagccctgcactcttcaggttaacctcactcaggtaccttgacatctctggtaacaacttcagcatgtcccagctcccggtaaccgggttcgagaatctcaccgagctcacccatcttgacctctctgacaccaacatcgccggtgaggtgccggctggcatcggaagccttgtgaacttggtgtaccttgacctctccacaagcttctacatcatttattatgatgacgagaacaagatgatgccgttcgcttcagacaacttctggcagctctcagtgccaaacatggagaccttgctggcaaaccttaccaacctggaggagctccatatgggaatggtggatatgtccggcaacggcgaacggtggtgtgacgacatagctaagtttacacctaagcttcaggttctaagtttaccttactgctcattgtcaggtcccatctgcacatccttgtcttccatgaattcgctcactaggattgagcttcattacaaccacttgtcaggttcagtgccagagttcttggctggcttctccaacctcactgttcttcaactgtccaaaaacaagtttgaaggattgtttcctcccatcatcttccagcacaagaagttggtaacaattaacatcactaataatcctgggttatcaggtagtctgcccaatttctcacaggacagtaagttagagaatcttcttatcagtagcacgaacttcacaggtataataccgagttccataagcaatctcaaatctcttacgaagctggaccttggtgccagtggcttctctggaatgctgccctcttcactaggtagcctcaaatacctggatttgctagaagtgtctgggatacagctaacaggatccatggcaccgtggatatcaaacctaacttctcttactgttctcaagttctctgattgtggattgtctggagagataccttcctcaataggaaacttaaagaaattgagtatgttagcattgtacaactgcaagttttcagggaaggtgcctccgcagatctttaatttgactcagttgcaatctctgcaactccattcgaacaatttggctggcacggtggaactcacgtcattcacaaaactgaaaaacctatctgtcctgaatctctcaaacaataaactacttgtgctacatggagaaaacagttcatcgttggtgcccttcccaaaaataaaactcttaaggttagcatcttgcagtatatcaacctttcccaacatcttgaagcatctccatgagatcaccactcttgacctttcgcataacaaaatccagggagctatacctcagtgggcatgggagacatggagaggcatgtactttctcctcctgaacatatcacacaataacattacaagtcttggatcagatcctctgcttcctcttgagattgacttctttgatctcagtttcaacagcattgaagggcccatacctgtaccacaagaaggtagtaccatgttagattattcaagcaaccagttctcctccatgcctcttcattactcaacttaccttggtgaaacttttactttcaaggcttccaaaaacaaactgtctggaaatattccatcaatctgtagtgctccgagactacaactcattgatctctcttacaataacttgagtggttcgatcccatcttgtttaatggaggatgtcactgcattacaaatattaaatctgaaggaaaataaacttgttggaacaataccagataacatcaaggaaggttgtgcacttgaggcaatagatttaagtggcaatttgtttgaggggaggatacccagatctctagttgcttgcaggaacttggagatcctcgacattggaaacaatgagattagtgactccttcccatgttggatgagcaaacttcctaaacttcaagtccttgccctcaagtctaacaagttcactggacaaataatggatccttcatatacagttgatggaaacagttgtgaatttacagagctcagaattgccgatatggcctcaaataacttcaatggaacattgccagaagcatggtttacgatgctcaagtccatgaatgccatatctgataatgatacattagtcatggaaaatcaatattaccatgggcaaacataccagtttactgctgcagttacatacaaagggaattacatcacaatttccaagatcttgaggacccttgtgctgattgatttctcgaataatgcattccatggcaccattcctgagactatcggggagcttgttctgcttcatgggctcaacatgtctcacaattcactaacaggaccaattccaactcagtttggcaggctgaatcaacttgagtcactggacctctcctcaaatgagctctttggtgaaattcccaaggagctagcatcactcaacttcctttcaatactgaatttgtcttataacacgttggttggaagaataccaaattcatatcagttttccacattttcgaacaactcttttcttggaaacactggtttgtgtggaccgccattatctaaacaatgtgataacccacaagagtcaactgtgatgccatatgtttcggagaaatccatagatgttctactagtcctcttcactgcattgggttttggtgtttcctttgcaattacaatcctaattgtatggggaaggcatatgaaaaaacagcgatga
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| Protein seq | MSSSTKRLVRPHHLAKPLLTMLHILLQVQAIAALTDDATAPVIQCLPDQASALLRLKNSFNKTAGGYSTAFRSWITGTDCCHWDGVDCGGGEDGRVTSLVLGGHNLQAGSISPALFRLTSLRYLDISGNNFSMSQLPVTGFENLTELTHLDLSDTNIAGEVPAGIGSLVNLVYLDLSTSFYIIYYDDENKMMPFASDNFWQLSVPNMETLLANLTNLEELHMGMVDMSGNGERWCDDIAKFTPKLQVLSLPYCSLSGPICTSLSSMNSLTRIELHYNHLSGSVPEFLAGFSNLTVLQLSKNKFEGLFPPIIFQHKKLVTINITNNPGLSGSLPNFSQDSKLENLLISSTNFTGIIPSSISNLKSLTKLDLGASGFSGMLPSSLGSLKYLDLLEVSGIQLTGSMAPWISNLTSLTVLKFSDCGLSGEIPSSIGNLKKLSMLALYNCKFSGKVPPQIFNLTQLQSLQLHSNNLAGTVELTSFTKLKNLSVLNLSNNKLLVLHGENSSSLVPFPKIKLLRLASCSISTFPNILKHLHEITTLDLSHNKIQGAIPQWAWETWRGMYFLLLNISHNNITSLGSDPLLPLEIDFFDLSFNSIEGPIPVPQEGSTMLDYSSNQFSSMPLHYSTYLGETFTFKASKNKLSGNIPSICSAPRLQLIDLSYNNLSGSIPSCLMEDVTALQILNLKENKLVGTIPDNIKEGCALEAIDLSGNLFEGRIPRSLVACRNLEILDIGNNEISDSFPCWMSKLPKLQVLALKSNKFTGQIMDPSYTVDGNSCEFTELRIADMASNNFNGTLPEAWFTMLKSMNAISDNDTLVMENQYYHGQTYQFTAAVTYKGNYITISKILRTLVLIDFSNNAFHGTIPETIGELVLLHGLNMSHNSLTGPIPTQFGRLNQLESLDLSSNELFGEIPKELASLNFLSILNLSYNTLVGRIPNSYQFSTFSNNSFLGNTGLCGPPLSKQCDNPQESTVMPYVSEKSIDVLLVLFTALGFGVSFAITILIVWGRHMKKQR |
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| Function | Receptor-like protein 19 [UniProtKB/Swiss-Prot:Q9ZUK3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0006900 | OsLiXu_12g0006900.01 | Chr12 | 5732937 | 5736275 | - | NAM | ||
| CDS seq | atgtcgtcgtccaccaagaggctggttcgtcctcaccatctcgcgaaaccattgcttaccatgctgcacatcctcctgcaagtccaggccatcgccgcgctcaccgacgatgcgacggcaccggtaattcagtgcctcccggaccaggcctccgcgctgctccggctgaagaactccttcaacaagacggcgggcggctactccactgcatttcggtcgtggatcaccggcacagattgctgccactgggacggcgtcgactgcggtggcggcgaagatggccgtgtcacctcgctcgtcttgggtggccacaacctgcaagccggcagcatcagccctgcactcttcaggttaacctcactcaggtaccttgacatctctggtaacaacttcagcatgtcccagctcccggtaaccgggttcgagaatctcaccgagctcacccatcttgacctctctgacaccaacatcgccggtgaggtgccggctggcatcggaagccttgtgaacttggtgtaccttgacctctccacaagcttctacatcatttattatgatgacgagaacaagatgatgccgttcgcttcagacaacttctggcagctctcagtgccaaacatggagaccttgctggcaaaccttaccaacctggaggagctccatatgggaatggtggatatgtccggcaacggcgaacggtggtgtgacgacatagctaagtttacacctaagcttcaggttctaagtttaccttactgctcattgtcaggtcccatctgcacatccttgtcttccatgaattcgctcactaggattgagcttcattacaaccacttgtcaggttcagtgccagagttcttggctggcttctccaacctcactgttcttcaactgtccaaaaacaagtttgaaggattgtttcctcccatcatcttccagcacaagaagttggtaacaattaacatcactaataatcctgggttatcaggtagtctgcccaatttctcacaggacagtaagttagagaatcttcttatcagtagcacgaacttcacaggtataataccgagttccataagcaatctcaaatctcttacgaagctggaccttggtgccagtggcttctctggaatgctgccctcttcactaggtagcctcaaatacctggatttgctagaagtgtctgggatacagctaacaggatccatggcaccgtggatatcaaacctaacttctcttactgttctcaagttctctgattgtggattgtctggagagataccttcctcaataggaaacttaaagaaattgagtatgttagcattgtacaactgcaagttttcagggaaggtgcctccgcagatctttaatttgactcagttgcaatctctgcaactccattcgaacaatttggctggcacggtggaactcacgtcattcacaaaactgaaaaacctatctgtcctgaatctctcaaacaataaactacttgtgctacatggagaaaacagttcatcgttggtgcccttcccaaaaataaaactcttaaggttagcatcttgcagtatatcaacctttcccaacatcttgaagcatctccatgagatcaccactcttgacctttcgcataacaaaatccagggagctatacctcagtgggcatgggagacatggagaggcatgtactttctcctcctgaacatatcacacaataacattacaagtcttggatcagatcctctgcttcctcttgagattgacttctttgatctcagtttcaacagcattgaagggcccatacctgtaccacaagaaggtagtaccatgttagattattcaagcaaccagttctcctccatgcctcttcattactcaacttaccttggtgaaacttttactttcaaggcttccaaaaacaaactgtctggaaatattccatcaatctgtagtgctccgagactacaactcattgatctctcttacaataacttgagtggttcgatcccatcttgtttaatggaggatgtcactgcattacaaatattaaatctgaaggaaaataaacttgttggaacaataccagataacatcaaggaaggttgtgcacttgaggcaatagatttaagtggcaatttgtttgaggggaggatacccagatctctagttgcttgcaggaacttggagatcctcgacattggaaacaatgagattagtgactccttcccatgttggatgagcaaacttcctaaacttcaagtccttgccctcaagtctaacaagttcactggacaaataatggatccttcatatacagttgatggaaacagttgtgaatttacagagctcagaattgccgatatggcctcaaataacttcaatggaacattgccagaagcatggtttacgatgctcaagtccatgaatgccatatctgataatgatacattagtcatggaaaatcaatattaccatgggcaaacataccagtttactgctgcagttacatacaaagggaattacatcacaatttccaagatcttgaggacccttgtgctgattgatttctcgaataatgcattccatggcaccattcctgagactatcggggagcttgttctgcttcatgggctcaacatgtctcacaattcactaacaggaccaattccaactcagtttggcaggctgaatcaacttgagtcactggacctctcctcaaatgagctctttggtgaaattcccaaggagctagcatcactcaacttcctttcaatactgaatttgtcttataacacgttggttggaagaataccaaattcatatcagttttccacattttcgaacaactcttttcttggaaacactggtttgtgtggaccgccattatctaaacaatgtgataacccacaagagtcaactgtgatgccatatgtttcggagaaatccatagatgttctactagtcctcttcactgcattgggttttggtgtttcctttgcaattacaatcctaattgtatggggaaggcatatgaaaaaacagcgatga
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| Protein seq | MSSSTKRLVRPHHLAKPLLTMLHILLQVQAIAALTDDATAPVIQCLPDQASALLRLKNSFNKTAGGYSTAFRSWITGTDCCHWDGVDCGGGEDGRVTSLVLGGHNLQAGSISPALFRLTSLRYLDISGNNFSMSQLPVTGFENLTELTHLDLSDTNIAGEVPAGIGSLVNLVYLDLSTSFYIIYYDDENKMMPFASDNFWQLSVPNMETLLANLTNLEELHMGMVDMSGNGERWCDDIAKFTPKLQVLSLPYCSLSGPICTSLSSMNSLTRIELHYNHLSGSVPEFLAGFSNLTVLQLSKNKFEGLFPPIIFQHKKLVTINITNNPGLSGSLPNFSQDSKLENLLISSTNFTGIIPSSISNLKSLTKLDLGASGFSGMLPSSLGSLKYLDLLEVSGIQLTGSMAPWISNLTSLTVLKFSDCGLSGEIPSSIGNLKKLSMLALYNCKFSGKVPPQIFNLTQLQSLQLHSNNLAGTVELTSFTKLKNLSVLNLSNNKLLVLHGENSSSLVPFPKIKLLRLASCSISTFPNILKHLHEITTLDLSHNKIQGAIPQWAWETWRGMYFLLLNISHNNITSLGSDPLLPLEIDFFDLSFNSIEGPIPVPQEGSTMLDYSSNQFSSMPLHYSTYLGETFTFKASKNKLSGNIPSICSAPRLQLIDLSYNNLSGSIPSCLMEDVTALQILNLKENKLVGTIPDNIKEGCALEAIDLSGNLFEGRIPRSLVACRNLEILDIGNNEISDSFPCWMSKLPKLQVLALKSNKFTGQIMDPSYTVDGNSCEFTELRIADMASNNFNGTLPEAWFTMLKSMNAISDNDTLVMENQYYHGQTYQFTAAVTYKGNYITISKILRTLVLIDFSNNAFHGTIPETIGELVLLHGLNMSHNSLTGPIPTQFGRLNQLESLDLSSNELFGEIPKELASLNFLSILNLSYNTLVGRIPNSYQFSTFSNNSFLGNTGLCGPPLSKQCDNPQESTVMPYVSEKSIDVLLVLFTALGFGVSFAITILIVWGRHMKKQR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.054838 | 0.0 | 0.137891 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0215950 | RBH | 1.611026 | 0.375488 | 1.967587 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g11930 | SBH | 0.012611 | 0.074365 | 0.130072 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0215950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006930 | RBH | 0.200743 | 0.0 | 0.927457 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007010 | SBH | 0.045362 | 0.000000 | 0.369254 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007170 | SBH | 1.891639 | 0.527976 | 1.866642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006980 | RBH | 0.0 | 0.097104 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006860 | RBH | 0.312480 | 0.0 | 2.086854 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0088300 | RBH | 0.2047285 | 0.0990915 | 0.21415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006840 | RBH | 0.057955 | 0.048037 | 0.092277 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0093700 | SBH | 0.4026075 | 0.4914615 | 3.262918 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006670 | SBH | 0.051297 | 0.075113 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007010 | RBH | 0.054627 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006840 | RBH | 0.142667 | 0.0 | 0.071272 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006760 | RBH | 0.0 | 0.412543 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006800 | SBH | 0.000000 | 0.0 | 0.313244 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006860 | RBH | 0.140919 | 1.183899 | 0.937963 |
