Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0006840 | OGI:12015420 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:5567919-5571148 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagcgttgctttctcatgcaccttccccataaaattaggattgtcattgcataggaaacaccaaatcccaatgcagtgaagaggactagtacaacatctgtggatttctccgaagtgtatgtcataacaatgggctcttttgggttgtcacattgtttggataacggtggtccacacaaaccaatgtttccaagaaaagaattgttagaaaaggtggaaaactgatatgagtttggtattgttccaaccaacatgttgtaggacaaattaagtgttgaaaggaagttgagtgatgctagctccttggggatCcccccagtgagctcattcgaggagaggtccaatgactcaagttgattcaacctgccaaactgagttggaattgatcctgtaagggcattgtgagacatgttgagcccgtgaagcagtacaagccccccgacagtctcaggaatggtaccatggaatgcattatttgagaaatcaatcagcataagggtcctcaatatcttggaaattgtcatgtcactccctttgtatgtaactgaggcagtaaactggtatgtttgcccatggtaatatttattttccatgactagtgtatcattttgagtcatggcaatcatggacttgagcatcttaaaccatgcttctggcaatgttccattgaagttgtttgaggccatgtcagcaattctgagctgcgtaaatgcacagctgttcctgtcaactgtatatgaaggatccattacttgtccagtgaacttgttagacttgaggacaaggacttgaagtttacaaagtttactcatccaacatggaaaggagtcactaatctgattgtttccaacgtcaaggatctccaagttcctgcaagaaactagagatctgggtatctttccgtcaatcaaattgccacttaaatctattgcctcaagtgaacagccttccttgatgctatcaggtaaatttccaacaagtttattttcttttagacttaatacttgtaattcaatggcatcctccattaagcaggatgggatcgaaccactcaagttattgtaagagagatcaaagagttgcaaattcgtagcagcggtacatattgatggtggaatatctccagagagtttgtttctggaggccttgaaagtgagagtttccccaaggtaagttaagtaatgaagaggaatggatgagaattggttgctcgagtaatctaatgtgctgctaccttcttgtggtatcggtatgggcccttcaatactgttgaaactgaggtcaaggaattctatatgaagaggaagcaaaggatcagatccaagacttgtaaagttattgtgcgacatgttcaagaggagaaattgcaagcctttccatgtcttccatgcccactgtggtatagctccttggatctggttatgtgaaatgtcaagactaaacatcttatcgagatgcttcaagatattgggaaaagtagacatgctgcaagatgctaaacttaagaactccaaattggggaatgacaccagtgatgaaatattttctccatctaccactactagtttattgtttgagagattcaggacggataggtttttcagttttgagaatgaggtgagttctattgtgccgtcaaaattgttcgaatggagcacgagagtttccaaatgagtcaaatttaagatctgcggaggcaccttccctgaaaacttgcagttgtacagtgctaacttaatcaattcccttaagtttcctattgaagaaggtacatgtccagacaatccgcagttggagaactggagaacagtaagagaagttaggttggatatccatgacggcatggatcctactatctggaacccagacacttctagcaaatccaagtataggaagctacctaacgaagagggcagtgttccagagaaaccacttgcaccaatgcccaacttcttcagagatctgagattgctgatggagctcggaatcatacctgtgaagtttgttctactgacgaacaaattctccaagctactgtcctgtgagaaatttggcagattaccagatatgccaggattcttagaaagatcaattgttctcaacttcttgtgctggaagatgatgggaggaaaccatccttgaaagttgtttgtggatagctgaagaacagtgaggttggaaaagccagccaagaactctggcactgaacctgacaataaattgtaatgaagctcgatcgtggtgagcgatcgcatggcagcaaatgatgcgcatacgggacctgacagtgagcagtaaggtaaactaagaacttgaagcttaggtgtgtacttggctatgtggtcacaccacaattcgccattattggacatatccaccattcccatatggagctcctccaggttggtgaggtttgtgagcaaggtctccatgtttggcgctgagagctgcccaatggagtgtgtagcgtaccgtgtgatgctgttttcgtcatcgtaagacacgatgacgaagctcgtggagaggtcgaggtagaccaggctcacgaggcgcccaatgccagccggcaccttgccggcgatgttggtgtccgagaggtcaaggtgtgtgagctcggtgagctgctcgaatccagtggccgggagctgggacatggtgaagatgttaccagagaggttgaggtgcttgagtgaggttaacctgaacagtgcatggtcgaggccgccggcttgcaggttgtggcctcccaagtcgagtgaggtgacacggccatcggcgccgtcgcagtggacgctctcccagcgacagcagtctgaaccagggatccatgatcgaaaggtggtggagtagtcgccggccgtcgcgttgaaggagcgcttcagtcggagcagcgcggaagcctggtctggaaggcacattgccggcgtcgtttcggaggaggtcgtcgtaaggtcgtcgagcgtggtggcctggactagctggaggatgagcatcattgctaggagtgatgccacatggtgagggactctcttggagaacgacgacatggtggtgaaggtattttcgcaagtgctgtgctttatccacttaaaaagacacgacacggtgaaatcagtagagggtggtagatttcttgaattttagacgactgtcagaaggactggggtcatgtatcattggttgaaagggctgctggctgttgcctaaacattgtagtgggaatggaaga
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| CDS seq | atgtcgtcgttctccaagagagtccctcaccatgtggcatcactcctagcaatgatgctcatcctccagctagtccaggccaccacgctcgacgaccttacgacgacctcctccgaaacgacgccggcaatgtgccttccagaccaggcttccgcgctgctccgactgaagcgctccttcaacgcgacggccggcgactactccaccacctttcgatcatggatccctggttcagactgctgtcgctgggagagcgtccactgcgacggcgccgatggccgtgtcacctcactcgacttgggaggccacaacctgcaagccggcggcctcgaccatgcactgttcaggttaacctcactcaagcacctcaacctctctggtaacatcttcaccatgtcccagctcccggccactggattcgagcagctcaccgagctcacacaccttgacctctcggacaccaacatcgccggcaaggtgccggctggcattgggcgcctcgtgagcctggtctacctcgacctctccacgagcttcgtcatcgtgtcttacgatgacgaaaacagcatcacacggtacgctacacactccattgggcagctctcagcgccaaacatggagaccttgctcacaaacctcaccaacctggaggagctccatatgggaatggtggatatgtccaataatggcgaattgtggtgtgaccacatagccaagtacacacctaagcttcaagttcttagtttaccttactgctcactgtcaggtcccgtatgcgcatcatttgctgccatgcgatcgctcaccacgatcgagcttcattacaatttattgtcaggttcagtgccagagttcttggctggcttttccaacctcactgttcttcagctatccacaaacaactttcaaggatggtttcctcccatcatcttccagcacaagaagttgagaacaattgatctttctaagaatcctggcatatctggtaatctgccaaatttctcacaggacagtagcttggagaatttgttcgtcagtagaacaaacttcacaggtatgattccgagctccatcagcaatctcagatctctgaagaagttgggcattggtgcaagtggtttctctggaacactgccctcttcgttaggtagcttcctatacttggatttgctagaagtgtctgggttccagatagtaggatccatgccgtcatggatatccaacctaacttctcttactgttctccagttctccaactgcggattgtctggacatgtaccttcttcaataggaaacttaagggaattgattaagttagcactgtacaactgcaagttttcagggaaggtgcctccgcagatcttaaatttgactcatttggaaactctcgtgctccattcgaacaattttgacggcacaatagaactcacctcattctcaaaactgaaaaacctatccgtcctgaatctctcaaacaataaactagtagtggtagatggagaaaatatttcatcactggtgtcattccccaatttggagttcttaagtttagcatcttgcagcatgtctacttttcccaatatcttgaagcatctcgataagatgtttagtcttgacatttcacataaccagatccaaggagctataccacagtgggcatggaagacatggaaaggcttgcaatttctcctcttgaacatgtcgcacaataactttacaagtcttggatctgatcctttgcttcctcttcatatagaattccttgacctcagtttcaacagtattgaagggcccataccgataccacaagaaggtagcagcacattagattactcgagcaaccaattctcatccattcctcttcattacttaacttaccttggggaaactctcactttcaaggcctccagaaacaaactctctggagatattccaccatcaatatgtaccgctgctacgaatttgcaactctttgatctctcttacaataacttgagtggttcgatcccatcctgcttaatggaggatgccattgaattacaagtattaagtctaaaagaaaataaacttgttggaaatttacctgatagcatcaaggaaggctgttcacttgaggcaatagatttaagtggcaatttgattgacggaaagatacccagatctctagtttcttgcaggaacttggagatccttgacgttggaaacaatcagattagtgactcctttccatgttggatgagtaaactttgtaaacttcaagtccttgtcctcaagtctaacaagttcactggacaagtaatggatccttcatatacagttgacaggaacagctgtgcatttacgcagctcagaattgctgacatggcctcaaacaacttcaatggaacattgccagaagcatggtttaagatgctcaagtccatgattgccatgactcaaaatgatacactagtcatggaaaataaatattaccatgggcaaacataccagtttactgcctcagttacatacaaagggagtgacatgacaatttccaagatattgaggacccttatgctgattgatttctcaaataatgcattccatggtaccattcctgagactgtcggggggcttgtactgcttcacgggctcaacatgtctcacaatgcccttacaggatcaattccaactcagtttggcaggttgaatcaacttgagtcattggacctctcctcgaatgagctcactgggggGatccccaaggagctagcatcactcaacttcctttcaacacttaatttgtcctacaacatgttggttggaacaataccaaactcatatcagttttccaccttttctaacaattcttttcttggaaacattggtttgtgtggaccaccgttatccaaacaatgtgacaacccaaaagagcccattgttatgacatacacttcggagaaatccacagatgttgtactagtcctcttcactgcattgggatttggtgtttcctatgcaatgacaatcctaattttatggggaaggtgcatgagaaagcaacgctga
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| Protein seq | MSSFSKRVPHHVASLLAMMLILQLVQATTLDDLTTTSSETTPAMCLPDQASALLRLKRSFNATAGDYSTTFRSWIPGSDCCRWESVHCDGADGRVTSLDLGGHNLQAGGLDHALFRLTSLKHLNLSGNIFTMSQLPATGFEQLTELTHLDLSDTNIAGKVPAGIGRLVSLVYLDLSTSFVIVSYDDENSITRYATHSIGQLSAPNMETLLTNLTNLEELHMGMVDMSNNGELWCDHIAKYTPKLQVLSLPYCSLSGPVCASFAAMRSLTTIELHYNLLSGSVPEFLAGFSNLTVLQLSTNNFQGWFPPIIFQHKKLRTIDLSKNPGISGNLPNFSQDSSLENLFVSRTNFTGMIPSSISNLRSLKKLGIGASGFSGTLPSSLGSFLYLDLLEVSGFQIVGSMPSWISNLTSLTVLQFSNCGLSGHVPSSIGNLRELIKLALYNCKFSGKVPPQILNLTHLETLVLHSNNFDGTIELTSFSKLKNLSVLNLSNNKLVVVDGENISSLVSFPNLEFLSLASCSMSTFPNILKHLDKMFSLDISHNQIQGAIPQWAWKTWKGLQFLLLNMSHNNFTSLGSDPLLPLHIEFLDLSFNSIEGPIPIPQEGSSTLDYSSNQFSSIPLHYLTYLGETLTFKASRNKLSGDIPPSICTAATNLQLFDLSYNNLSGSIPSCLMEDAIELQVLSLKENKLVGNLPDSIKEGCSLEAIDLSGNLIDGKIPRSLVSCRNLEILDVGNNQISDSFPCWMSKLCKLQVLVLKSNKFTGQVMDPSYTVDRNSCAFTQLRIADMASNNFNGTLPEAWFKMLKSMIAMTQNDTLVMENKYYHGQTYQFTASVTYKGSDMTISKILRTLMLIDFSNNAFHGTIPETVGGLVLLHGLNMSHNALTGSIPTQFGRLNQLESLDLSSNELTGGIPKELASLNFLSTLNLSYNMLVGTIPNSYQFSTFSNNSFLGNIGLCGPPLSKQCDNPKEPIVMTYTSEKSTDVVLVLFTALGFGVSYAMTILILWGRCMRKQR |
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| Function | Receptor-like protein 6 [UniProtKB/Swiss-Prot:Q9C637] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0006840 | OsLiXu_12g0006840.01 | Chr12 | 5567919 | 5571148 | - | NAM | ||
| CDS seq | atgtcgtcgttctccaagagagtccctcaccatgtggcatcactcctagcaatgatgctcatcctccagctagtccaggccaccacgctcgacgaccttacgacgacctcctccgaaacgacgccggcaatgtgccttccagaccaggcttccgcgctgctccgactgaagcgctccttcaacgcgacggccggcgactactccaccacctttcgatcatggatccctggttcagactgctgtcgctgggagagcgtccactgcgacggcgccgatggccgtgtcacctcactcgacttgggaggccacaacctgcaagccggcggcctcgaccatgcactgttcaggttaacctcactcaagcacctcaacctctctggtaacatcttcaccatgtcccagctcccggccactggattcgagcagctcaccgagctcacacaccttgacctctcggacaccaacatcgccggcaaggtgccggctggcattgggcgcctcgtgagcctggtctacctcgacctctccacgagcttcgtcatcgtgtcttacgatgacgaaaacagcatcacacggtacgctacacactccattgggcagctctcagcgccaaacatggagaccttgctcacaaacctcaccaacctggaggagctccatatgggaatggtggatatgtccaataatggcgaattgtggtgtgaccacatagccaagtacacacctaagcttcaagttcttagtttaccttactgctcactgtcaggtcccgtatgcgcatcatttgctgccatgcgatcgctcaccacgatcgagcttcattacaatttattgtcaggttcagtgccagagttcttggctggcttttccaacctcactgttcttcagctatccacaaacaactttcaaggatggtttcctcccatcatcttccagcacaagaagttgagaacaattgatctttctaagaatcctggcatatctggtaatctgccaaatttctcacaggacagtagcttggagaatttgttcgtcagtagaacaaacttcacaggtatgattccgagctccatcagcaatctcagatctctgaagaagttgggcattggtgcaagtggtttctctggaacactgccctcttcgttaggtagcttcctatacttggatttgctagaagtgtctgggttccagatagtaggatccatgccgtcatggatatccaacctaacttctcttactgttctccagttctccaactgcggattgtctggacatgtaccttcttcaataggaaacttaagggaattgattaagttagcactgtacaactgcaagttttcagggaaggtgcctccgcagatcttaaatttgactcatttggaaactctcgtgctccattcgaacaattttgacggcacaatagaactcacctcattctcaaaactgaaaaacctatccgtcctgaatctctcaaacaataaactagtagtggtagatggagaaaatatttcatcactggtgtcattccccaatttggagttcttaagtttagcatcttgcagcatgtctacttttcccaatatcttgaagcatctcgataagatgtttagtcttgacatttcacataaccagatccaaggagctataccacagtgggcatggaagacatggaaaggcttgcaatttctcctcttgaacatgtcgcacaataactttacaagtcttggatctgatcctttgcttcctcttcatatagaattccttgacctcagtttcaacagtattgaagggcccataccgataccacaagaaggtagcagcacattagattactcgagcaaccaattctcatccattcctcttcattacttaacttaccttggggaaactctcactttcaaggcctccagaaacaaactctctggagatattccaccatcaatatgtaccgctgctacgaatttgcaactctttgatctctcttacaataacttgagtggttcgatcccatcctgcttaatggaggatgccattgaattacaagtattaagtctaaaagaaaataaacttgttggaaatttacctgatagcatcaaggaaggctgttcacttgaggcaatagatttaagtggcaatttgattgacggaaagatacccagatctctagtttcttgcaggaacttggagatccttgacgttggaaacaatcagattagtgactcctttccatgttggatgagtaaactttgtaaacttcaagtccttgtcctcaagtctaacaagttcactggacaagtaatggatccttcatatacagttgacaggaacagctgtgcatttacgcagctcagaattgctgacatggcctcaaacaacttcaatggaacattgccagaagcatggtttaagatgctcaagtccatgattgccatgactcaaaatgatacactagtcatggaaaataaatattaccatgggcaaacataccagtttactgcctcagttacatacaaagggagtgacatgacaatttccaagatattgaggacccttatgctgattgatttctcaaataatgcattccatggtaccattcctgagactgtcggggggcttgtactgcttcacgggctcaacatgtctcacaatgcccttacaggatcaattccaactcagtttggcaggttgaatcaacttgagtcattggacctctcctcgaatgagctcactgggggGatccccaaggagctagcatcactcaacttcctttcaacacttaatttgtcctacaacatgttggttggaacaataccaaactcatatcagttttccaccttttctaacaattcttttcttggaaacattggtttgtgtggaccaccgttatccaaacaatgtgacaacccaaaagagcccattgttatgacatacacttcggagaaatccacagatgttgtactagtcctcttcactgcattgggatttggtgtttcctatgcaatgacaatcctaattttatggggaaggtgcatgagaaagcaacgctga
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| Protein seq | MSSFSKRVPHHVASLLAMMLILQLVQATTLDDLTTTSSETTPAMCLPDQASALLRLKRSFNATAGDYSTTFRSWIPGSDCCRWESVHCDGADGRVTSLDLGGHNLQAGGLDHALFRLTSLKHLNLSGNIFTMSQLPATGFEQLTELTHLDLSDTNIAGKVPAGIGRLVSLVYLDLSTSFVIVSYDDENSITRYATHSIGQLSAPNMETLLTNLTNLEELHMGMVDMSNNGELWCDHIAKYTPKLQVLSLPYCSLSGPVCASFAAMRSLTTIELHYNLLSGSVPEFLAGFSNLTVLQLSTNNFQGWFPPIIFQHKKLRTIDLSKNPGISGNLPNFSQDSSLENLFVSRTNFTGMIPSSISNLRSLKKLGIGASGFSGTLPSSLGSFLYLDLLEVSGFQIVGSMPSWISNLTSLTVLQFSNCGLSGHVPSSIGNLRELIKLALYNCKFSGKVPPQILNLTHLETLVLHSNNFDGTIELTSFSKLKNLSVLNLSNNKLVVVDGENISSLVSFPNLEFLSLASCSMSTFPNILKHLDKMFSLDISHNQIQGAIPQWAWKTWKGLQFLLLNMSHNNFTSLGSDPLLPLHIEFLDLSFNSIEGPIPIPQEGSSTLDYSSNQFSSIPLHYLTYLGETLTFKASRNKLSGDIPPSICTAATNLQLFDLSYNNLSGSIPSCLMEDAIELQVLSLKENKLVGNLPDSIKEGCSLEAIDLSGNLIDGKIPRSLVSCRNLEILDVGNNQISDSFPCWMSKLCKLQVLVLKSNKFTGQVMDPSYTVDRNSCAFTQLRIADMASNNFNGTLPEAWFKMLKSMIAMTQNDTLVMENKYYHGQTYQFTASVTYKGSDMTISKILRTLMLIDFSNNAFHGTIPETVGGLVLLHGLNMSHNALTGSIPTQFGRLNQLESLDLSSNELTGGIPKELASLNFLSTLNLSYNMLVGTIPNSYQFSTFSNNSFLGNIGLCGPPLSKQCDNPKEPIVMTYTSEKSTDVVLVLFTALGFGVSYAMTILILWGRCMRKQR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.142667 | 0.0 | 0.071272 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0211500 | RBH | 0.080602 | 0.0 | 0.294849 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10870 | RBH | 0.054167 | 0.0 | 0.092281 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0211500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006920 | SBH | 0.000000 | 0.0 | 1.701963 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007010 | SBH | 0.045362 | 0.000000 | 0.369254 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007170 | SBH | 1.891639 | 0.527976 | 1.866642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006930 | RBH | 0.060071 | 0.018166 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006800 | RBH | 0.057950 | 2.138141 | 3.507751 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0087800 | RBH | 0.569166 | 1.467512 | 2.4731035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006780 | RBH | 0.089767 | 0.0 | 0.187876 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0093700 | RBH | 0.4026075 | 0.4914615 | 3.262918 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006670 | RBH | 0.051297 | 0.075113 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006950 | RBH | 0.061188 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006800 | RBH | 2.187982 | 1.954866 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006900 | RBH | 0.054838 | 0.0 | 0.137891 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006700 | RBH | 0.0 | 0.431043 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006800 | SBH | 0.000000 | 0.0 | 0.313244 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006810 | RBH | 0.146365 | 0.0 | 0.352198 |
