Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0001090 | OGI:12002880 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:820280-821136 | ||||||||
| Gene Symbol | OsLTP1.19, OsLtpI.19 | ||||||||||
| DNA seq | gatccatccatcgccggcgacgaggagacgctgactgaacgaagcttacctagctactcgatcgatcatccatcagtctagatagatatggcggctttgaacttcaaggcggtggccgccgtgatggtgatggcgatggtggtggcggcgccgggggcgtcggcggcgataacgtgcgggcaggtggggtcggcgatcgcgccgtgcatctcttacgtgacggggaggggtggcctcacccagggatgctgcaacggcgtcaaggggctgaacaacgccgcccgcaccaccgctgaccgccaggccgcctgccggtgcctcaagaccctcgccggcaccatcaagtctctcaacctcggcgccgccgccggcatccccggcaagtgcggcgtcaacgtcggcttccccatcagcctctccactgactgcagcaagtaaaaatatatactatcatccatgcaatccatgcatgttacttttttcaggttaattcaacttaatttactgactaatccactgtatatatgcatgattatttcattggtgcagggtcagctagatcgattaatcctgcgtagaccgaccgatcgatatatcgatcgatgctggctcgcagttgatcaactagccaaaataatagctacagtaaaaataacagctggggcatatcattcagcgctggtcatctctctctgtatctctgtatactttatgttgcacgctccgtgcgtgcatcagcatgctatcttaattttcttgagtctgtacactgctctgtgtacgtgtaatcctacgttgatgaatcgcatcttgtccagacttggacctagctagctacgtactccagcttcttgttg
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| CDS seq | atggcggctttgaacttcaaggcggtggccgccgtgatggtgatggcgatggtggtggcggcgccgggggcgtcggcggcgataacgtgcgggcaggtggggtcggcgatcgcgccgtgcatctcttacgtgacggggaggggtggcctcacccagggatgctgcaacggcgtcaaggggctgaacaacgccgcccgcaccaccgctgaccgccaggccgcctgccggtgcctcaagaccctcgccggcaccatcaagtctctcaacctcggcgccgccgccggcatccccggcaagtgcggcgtcaacgtcggcttccccatcagcctctccactgactgcagcaaggtcagctag |
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| Protein seq | MAALNFKAVAAVMVMAMVVAAPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS |
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| Function | Non-specific lipid-transfer protein 3 [UniProtKB/Swiss-Prot:Q43766] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0001090 | OsLiXu_12g0001090.01 | Chr12 | 820280 | 821136 | + | NAM | ||
| CDS seq | atggcggctttgaacttcaaggcggtggccgccgtgatggtgatggcgatggtggtggcggcgccgggggcgtcggcggcgataacgtgcgggcaggtggggtcggcgatcgcgccgtgcatctcttacgtgacggggaggggtggcctcacccagggatgctgcaacggcgtcaaggggctgaacaacgccgcccgcaccaccgctgaccgccaggccgcctgccggtgcctcaagaccctcgccggcaccatcaagtctctcaacctcggcgccgccgccggcatccccggcaagtgcggcgtcaacgtcggcttccccatcagcctctccactgactgcagcaaggtcagctag
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| Protein seq | MAALNFKAVAAVMVMAMVVAAPGASAAITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0001090 | OsLiXu_12g0001090.02 | Chr12 | 820281 | 821045 | + | IsoSeq | ||
| CDS seq | ccatccatcgccggcgacgaggagacgctgactgaacgaagcttacctagctactcgatcgatcatccatca |
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| Protein seq | PSIAGDEETLTERSLPSYSIDHPS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.633897 | 0.0 | 5.563022 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0115300 | RBH | 39.655373 | 46.716396 | 23.198679 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02330 | SBH | 19.083960 | 20.910036 | 4.323853 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0115300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000950 | RBH | 17.856089 | 0.0 | 24.107832 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001160 | RBH | 9.007548 | 0.0 | 8.830144 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001170 | RBH | 29.274427 | 0.0 | 32.205750 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000990 | RBH | 2.827130 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001440 | SBH | 83.435173 | 0.0 | 52.368744 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0014300 | SBH | 46.0222835 | 0 | 0.500598 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001430 | SBH | 5.290631 | 0.0 | 5.430645 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0014000 | RBH | 29.987224 | 0 | 0.031296 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000970 | RBH | 1.320028 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001480 | SBH | 11.463335 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001460 | SBH | 99.860260 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001130 | RBH | 13.811701 | 0.0 | 12.057741 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001160 | SBH | 10.740695 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001100 | SBH | 14.322742 | 0.0 | 15.171124 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001120 | SBH | 75.693802 | 0.0 | 185.052811 |
