Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0023290 | OGI:11080910 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:30647697-30651583 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggatgatgatatgtggggaatatccatggcacggtcgatcatctcggccgtcgtcagaaggctcctggcctccgaactcatcatcatcagctccgatgcatcagacaagctccgtaacctggaggcttggattctccctcagctgccgctgtttgatctgcaaacaatagagaacaatcgaagacatgagttggagatattaatgggggagctcaagtctgcattttatgaagcggacgatatcctagatgaagcggagtaccgtggtctagaggaacaagtcgatggtagcacctcaaaccaggtcagttaattcttgttctctcactttccatcagtacgaacatatatatacttgataacactagcttagtgtggcttatatatattggctgggttgattatcctttgagtgagtttacggtctttcgtgcatgagctatgctatattaattttcaatctgtagaagttaattatgaacatttttcacaactacagaaaatgacaccagtgccgattcttaactggtacaaaactttcggcactgatgcccccccccccctctcatcagtgccgggtcccgacccgacacagatgtacctagaagcacctaggtagaatctagatatatcatctatgctgggtattctctaaactcaatactgatgtgggctcatttgtgccgggtattgtgtagacccaatattgatatgggttaatctgtgctaggtgtgggctaaaccgcactgataataccaactaaacaaatatttttgaatattcctaacatttttgctcatgcatatacaaagccccaaccactaatatctatttttccaagttatataatttttatcattgcaaggattcgaacaagagacatttccctcatatgcacctatccttcccaactcatctacacatcaatcttcttagaaaataaatattttcccttttgagccttcctaaacaatatttcaatcttgaacttgagtatctaaaaaaactcaaatgaaaaggttgtctaccacaaaatcatagatcttgtcgagagctacaattttcatacaaacttaatcgcaatccaagtttgtatgaaaaagttaagtttatatatccgaaattaacactaatatgattaaggtcattaggatacccggcactgaggcacttatgtcttttcctgccaaaagtccagtcatctcgctccaaatggtaagactctggcactgatgtgttactcatcagtgtcagctagtggcaagaccagacattgatgtgttgtcgaacaattagtgccggatcggatgattataagacccaacatgcactgatgtctcttcatcaatgctgggtgaagcatgtcattagcatgaacttgttttttggggttgaaaaccatcattagtgccaggttttgtcaaactggcactgatgtgctcttttgtggtagaaagtttatagtggtttctattattattattattattattattattattattattattattattattattattattattattattcagctaccaatttcattagtagaaggcattaatttatgagttctactactaatagaaaaattatactttcatccacaggagttaggtggtagaaaaaatagatatggtacacactagatgaaaaatgaaaaaaaattagattgattctactgccaataaggaccattgtaaaatttgttaaaatttaattggtatctctcagttatctgagtaccaactgataccaaagtttgtagctcaatttttttttgcacgaatcaattttggtatttttcaacagtctcgagaactataaaacttctcttacccttttatcgcgattgagtaaaatttatgctacataaatgactcgcacatgctacctatatttcataattataaatattcaaatttttcataagcattaatctctccgtcctataatataagggattttggagggatgtgacatttcctagtaccacaaatctggacagaccataatataagggattttggagtgacgtgacatttcctctatctagattcgtgctactagctaggaaatgtcacatccctccaaaatccattatattattggatggagggagtatattaatgttatgaatatttcataattatattaatactttttcataagcataagcattattattattattattattattattatttgtaattcagattcctgttatgcttttgcagaatgttttcacagacttaacaattatcttgacggaactgttgaagaaaattgaaaggctaattgatgatgtagagaagactgttgctaacctgccaagaactgaggcaacaggccgatatgatgctcgtaatctaggcctttcttccgatgagccaactaaggaagatctgttgtggagctaccaccatcttgatgagcagctgaagcgatgctttgcttactgctgtattttccccagagagcatcagctgcgacgtgacgaaataattaacatgtggatggcagaagggttcataaaaacttccggtgaaggtgatgaggacatggaagaagttggtgcgagatactttgacgaattagttgaaacctcttttctgaaaccaactcagagattgcggttaaagttctatgaaattaatgaattcaaaataaatgatatgcttcatgatttagcagagaaggttgcaggaagtgatggtttgagaatcgaggatggttggtctggagaagcccctaaagatgttcgtcatcttgttgtccagactagcttaagtaaactaataattgaggagattctaaaacaggaaaatctacgcactgtcatcatttatactgacattggggacaagttaactgaggaaaacttatttgaaagaatcttcacgaggctaaggaaacttcgggtactgagagtacatagccatcattacaatgtatacccagtcccagcatctattgggcagctaaagcatctacgctatctctcttttcgattccatactccagatttacccagcacatttagcaagctttatcatatccagacgctagattttggtccttgcagaaatttatcatttttatctgtacatatggccaacctcatcaacttgcatcacatcaacatagagtatcctgatgaaacaagttttccgaacattggcaggctgacattactgaaagtgttgccactctacactgtaaggatggaacaagggtacgagattcatcagctggagcacttaaacaagctctctggtaggatgcagatccatggccttcaaaatgttcaaagcaaagatgaagcagccaaagcagagctatctaataaggaagggctcacagacctgacactgcattgggatgatgatagctgcaatccagatgtacaggcaaatgttcttgaaggtctttgccctccaatgtgccttccaaagctgagaatcgtcggctaccgcggcatgaagtacccatcatggatggtgggcgaacagaatgttccaaatgaattgggcgaactcgagctcttcagatgcaacctcgagcaacctttcccttctcgactgtgtaactttttttctcgtctgcgctcgctggtgcttcaccagtgcagctgggacgccttgccagaatttttgaaggacctccctgagctcggggaaatgattatctatggatgcatgaagcttcggtctcttccagtactgcctcgatctctctactatctccaaatagacgactgtgacgatgatttcatgacgtcttgcagaacatctgggcatccaaattggcaaaagatcaaccacattcccgaattatttgttggaagggaaccaattgactccccaaggtaa
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| CDS seq | atggcggatgatgatatgtggggaatatccatggcacggtcgatcatctcggccgtcgtcagaaggctcctggcctccgaactcatcatcatcagctccgatgcatcagacaagctccgtaacctggaggcttggattctccctcagctgccgctgtttgatctgcaaacaatagagaacaatcgaagacatgagttggagatattaatgggggagctcaagtctgcattttatgaagcggacgatatcctagatgaagcggagtaccgtggtctagaggaacaagtcgatggtagcacctcaaaccagaaaattgaaaggctaattgatgatgtagagaagactgttgctaacctgccaagaactgaggcaacaggccgatatgatgctcgtaatctaggcctttcttccgatgagccaactaaggaagatctgttgtggagctaccaccatcttgatgagcagctgaagcgatgctttgcttactgctgtattttccccagagagcatcagctgcgacgtgacgaaataattaacatgtggatggcagaagggttcataaaaacttccggtgaaggtgatgaggacatggaagaagttggtgcgagatactttgacgaattagttgaaacctcttttctgaaaccaactcagagattgcggttaaagttctatgaaattaatgaattcaaaataaatgatatgcttcatgatttagcagagaaggttgcaggaagtgatggtttgagaatcgaggatggttggtctggagaagcccctaaagatgttcgtcatcttgttgtccagactagcttaagtaaactaataattgaggagattctaaaacaggaaaatctacgcactgtcatcatttatactgacattggggacaagttaactgaggaaaacttatttgaaagaatcttcacgaggctaaggaaacttcgggtactgagagtacatagccatcattacaatgtatacccagtcccagcatctattgggcagctaaagcatctacgctatctctcttttcgattccatactccagatttacccagcacatttagcaagctttatcatatccagacgctagattttggtccttgcagaaatttatcatttttatctgtacatatggccaacctcatcaacttgcatcacatcaacatagagtatcctgatgaaacaagttttccgaacattggcaggctgacattactgaaagtgttgccactctacactgtaaggatggaacaagggtacgagattcatcagctggagcacttaaacaagctctctggtaggatgcagatccatggccttcaaaatgttcaaagcaaagatgaagcagccaaagcagagctatctaataaggaagggctcacagacctgacactgcattgggatgatgatagctgcaatccagatgtacaggcaaatgttcttgaaggtctttgccctccaatgtgccttccaaagctgagaatcgtcggctaccgcggcatgaagtacccatcatggatggtgggcgaacagaatgttccaaatgaattgggcgaactcgagctcttcagatgcaacctcgagcaacctttcccttctcgactgtgtaactttttttctcgtctgcgctcgctggtgcttcaccagtgcagctgggacgccttgccagaatttttgaaggacctccctgagctcggggaaatgattatctatggatgcatgaagcttcggtctcttccagtactgcctcgatctctctactatctccaaatagacgactgtgacgatgatttcatgacgtcttgcagaacatctgggcatccaaattggcaaaagatcaaccacattcccgaattatttgttggaagggaaccaattgactccccaaggtaa
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| Protein seq | MADDDMWGISMARSIISAVVRRLLASELIIISSDASDKLRNLEAWILPQLPLFDLQTIENNRRHELEILMGELKSAFYEADDILDEAEYRGLEEQVDGSTSNQKIERLIDDVEKTVANLPRTEATGRYDARNLGLSSDEPTKEDLLWSYHHLDEQLKRCFAYCCIFPREHQLRRDEIINMWMAEGFIKTSGEGDEDMEEVGARYFDELVETSFLKPTQRLRLKFYEINEFKINDMLHDLAEKVAGSDGLRIEDGWSGEAPKDVRHLVVQTSLSKLIIEEILKQENLRTVIIYTDIGDKLTEENLFERIFTRLRKLRVLRVHSHHYNVYPVPASIGQLKHLRYLSFRFHTPDLPSTFSKLYHIQTLDFGPCRNLSFLSVHMANLINLHHINIEYPDETSFPNIGRLTLLKVLPLYTVRMEQGYEIHQLEHLNKLSGRMQIHGLQNVQSKDEAAKAELSNKEGLTDLTLHWDDDSCNPDVQANVLEGLCPPMCLPKLRIVGYRGMKYPSWMVGEQNVPNELGELELFRCNLEQPFPSRLCNFFSRLRSLVLHQCSWDALPEFLKDLPELGEMIIYGCMKLRSLPVLPRSLYYLQIDDCDDDFMTSCRTSGHPNWQKINHIPELFVGREPIDSPR |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0023290 | OsLiXu_11g0023290.01 | Chr11 | 30647697 | 30651583 | + | NAM | ||
| CDS seq | atggcggatgatgatatgtggggaatatccatggcacggtcgatcatctcggccgtcgtcagaaggctcctggcctccgaactcatcatcatcagctccgatgcatcagacaagctccgtaacctggaggcttggattctccctcagctgccgctgtttgatctgcaaacaatagagaacaatcgaagacatgagttggagatattaatgggggagctcaagtctgcattttatgaagcggacgatatcctagatgaagcggagtaccgtggtctagaggaacaagtcgatggtagcacctcaaaccagaaaattgaaaggctaattgatgatgtagagaagactgttgctaacctgccaagaactgaggcaacaggccgatatgatgctcgtaatctaggcctttcttccgatgagccaactaaggaagatctgttgtggagctaccaccatcttgatgagcagctgaagcgatgctttgcttactgctgtattttccccagagagcatcagctgcgacgtgacgaaataattaacatgtggatggcagaagggttcataaaaacttccggtgaaggtgatgaggacatggaagaagttggtgcgagatactttgacgaattagttgaaacctcttttctgaaaccaactcagagattgcggttaaagttctatgaaattaatgaattcaaaataaatgatatgcttcatgatttagcagagaaggttgcaggaagtgatggtttgagaatcgaggatggttggtctggagaagcccctaaagatgttcgtcatcttgttgtccagactagcttaagtaaactaataattgaggagattctaaaacaggaaaatctacgcactgtcatcatttatactgacattggggacaagttaactgaggaaaacttatttgaaagaatcttcacgaggctaaggaaacttcgggtactgagagtacatagccatcattacaatgtatacccagtcccagcatctattgggcagctaaagcatctacgctatctctcttttcgattccatactccagatttacccagcacatttagcaagctttatcatatccagacgctagattttggtccttgcagaaatttatcatttttatctgtacatatggccaacctcatcaacttgcatcacatcaacatagagtatcctgatgaaacaagttttccgaacattggcaggctgacattactgaaagtgttgccactctacactgtaaggatggaacaagggtacgagattcatcagctggagcacttaaacaagctctctggtaggatgcagatccatggccttcaaaatgttcaaagcaaagatgaagcagccaaagcagagctatctaataaggaagggctcacagacctgacactgcattgggatgatgatagctgcaatccagatgtacaggcaaatgttcttgaaggtctttgccctccaatgtgccttccaaagctgagaatcgtcggctaccgcggcatgaagtacccatcatggatggtgggcgaacagaatgttccaaatgaattgggcgaactcgagctcttcagatgcaacctcgagcaacctttcccttctcgactgtgtaactttttttctcgtctgcgctcgctggtgcttcaccagtgcagctgggacgccttgccagaatttttgaaggacctccctgagctcggggaaatgattatctatggatgcatgaagcttcggtctcttccagtactgcctcgatctctctactatctccaaatagacgactgtgacgatgatttcatgacgtcttgcagaacatctgggcatccaaattggcaaaagatcaaccacattcccgaattatttgttggaagggaaccaattgactccccaaggtaa
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| Protein seq | MADDDMWGISMARSIISAVVRRLLASELIIISSDASDKLRNLEAWILPQLPLFDLQTIENNRRHELEILMGELKSAFYEADDILDEAEYRGLEEQVDGSTSNQKIERLIDDVEKTVANLPRTEATGRYDARNLGLSSDEPTKEDLLWSYHHLDEQLKRCFAYCCIFPREHQLRRDEIINMWMAEGFIKTSGEGDEDMEEVGARYFDELVETSFLKPTQRLRLKFYEINEFKINDMLHDLAEKVAGSDGLRIEDGWSGEAPKDVRHLVVQTSLSKLIIEEILKQENLRTVIIYTDIGDKLTEENLFERIFTRLRKLRVLRVHSHHYNVYPVPASIGQLKHLRYLSFRFHTPDLPSTFSKLYHIQTLDFGPCRNLSFLSVHMANLINLHHINIEYPDETSFPNIGRLTLLKVLPLYTVRMEQGYEIHQLEHLNKLSGRMQIHGLQNVQSKDEAAKAELSNKEGLTDLTLHWDDDSCNPDVQANVLEGLCPPMCLPKLRIVGYRGMKYPSWMVGEQNVPNELGELELFRCNLEQPFPSRLCNFFSRLRSLVLHQCSWDALPEFLKDLPELGEMIIYGCMKLRSLPVLPRSLYYLQIDDCDDDFMTSCRTSGHPNWQKINHIPELFVGREPIDSPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0668100 | SBH | 0.545508 | 1.187026 | 0.660127 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44580 | SBH | 0.270107 | 0.700377 | 0.157062 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0668100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023970 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023520 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023410 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023930 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0436600 | SBH | 0.0125795 | 0.0753605 | 0.007792 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024390 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0430000 | SBH | 0.0419675 | 0.0645025 | 0.058287 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024050 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024030 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023680 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024110 | SBH | 0.0 | 0.0 | 0.0 |
