Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0002930 | OGI:11006860 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:2121623-2123959 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtgcgattggtcttgggttggcatcgggaatctgcagagcgggcagcgatggctgaggcggagccaatccaagatgcaggtcgcatggaagcaatgcgagcagggcatcttcgtcagcttctctcccgcctcgaaatcctccaggcacacagcgcacccgcgttccctggcgtcgcttgccatcgcctcctgcagctcggccatggccttgctcgacgcggggacagcgccgaacccaccgttcctgtacgcatcctcctccactactccatccatggcaatggcagtggcagtgccacggcgctgacgctgaagaatatgatcgcgaacctgatcaacaagctgctgcaagaagtcggcgtccagttctatgcgcccccgacgaatgtcagacctcaagcgctcgcgaatgatctcatgagcttcttcctgcgttaatagcgtccgactacctgggcggtacatcaagtcggtgttagaatggtgggatcaaaccacaagtgtaaaagaggcacccaaaaagactctacgctccctaacgctcctagtcgcctaggagatctggaatgaaaaaaatcgcagaacattccagcataaggagctcccaccgagtggtcttctgacaaaaattaaggatgaggccaagatatgggccttagcaggcgcgcatcatctgagaaattggcttgttccttagttgactagggccaaaggtcctgagtttttttctttccctttacactgtacagttttctccttctatattcgatgaaattagcggctcgccgattcattcaaaaaaaaaaagaaagaaagtataacgggggaagccttggaagctcaagttctcgatgggagggaaatctcttggtagtgctcttgcgaccgcggaggcatccacctccatcgatctgcggcagcaacacacgccggaggcgctcaccgtacgtcccctgcagaagagatcgccaatggtggaggcgagcaaatcaataggcggccgggtgggggggaatggatcaggattcaggaggtaaacgaaaccaagacacgatcgagcccctacctgcagagtttatagacgaagaaatcgatcggactccgtctccgcgtcccgatcgaaatcgagagtgaatccgactcggatccacccccaaatccccaattactggtgaagcttccgtttcacgtattgaaaaatttgttgccgtgccgtgcgtcatggggatgattaggtcagtcaagtggatgctgttagtagcctgtttccggctagcagcattattcacgtgattagaggatcagcaattcagcgttaggatttactaatacacacgattgcggaaaaggcaattgcagatttacagtcttaacagatacttgcatatttggatgtgacctgagattgtctatactaatttctgccctgcggcctgatcccctactaactttgtgctcactgtcctacgctcctgcgagatcagatgttgaagtttatcttgtaatcttgttttcttggctttcatatgtcgtagtgtcacggtgtcagttgcatgcatagaagcggtttaagtacaagcaattatcggacatggtgagtttgatcatcgattcatcgtattgttttttttggttcaaattcaaatttaagaaagagggcgtctgaagacgaggaaactacaagcaaaacaatggagaaagaaactggaattaggatcgtgatcaaaggagagcatcgacgtaatcacacaccgcttcaaaattaacaagttcaacttctccaaaaaatttggagaagtgcatttgaaccaaactgcatcataggtacattgctaaacttgatctttacccccataaataggaggtgcgcggtcaattagcattgttgaatcgtagctgtaagacctgtatccattgctctagctcagcgtgcagctcctccaaaacatcgttgtacgaggacatcgccgagcggcagacggggcagttgtctctgatcgcaagccaaccgaagatgcagcgctgatggaacgagtgcgagcacggcatcatcctgagctcctcgtctttctccccgaaatcctgcaggcacacggcgcacgcctcctccctcgtctcccccagcctcggccggtgcagcgactccagtcgatggtcgtcgatgccggctcgtgcctgtagccgtcttcgatccatctcttcgctaacgctggccaagtaatcccgtagccatcttcgctgccgcatctccctgtgaggaagctgatgatagcgagtgtatcgctgtgcctccggtgggctgtgcagtagcgtgtatcttcttccccgcatcat
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| CDS seq | atgatgcggggaagaagatacacgctactgcacagcccaccggaggcacagcgatacactcgctatcatcagcttcctcacagggagatgcggcagcgaagatggctacgggattacttggccagcgttagcgaagagatggatcgaagacggctacaggcacgagccggcatcgacgaccatcgactggagtcgctgcaccggccgaggctgggggagacgagggaggaggcgtgcgccgtgtgcctgcaggatttcggggagaaagacgaggagctcaggatgatgccgtgctcgcactcgttccatcagcgctgcatcttcggttggcttgcgatcagagacaactgccccgtctgccgctcggcgatgtcctcgtacaacgatgttttggaggagctgcacgctgagctagagcaatggatacagcgtcagcgccgtggcactgccactgccattgccatggatggagtagtggaggaggatgcgtacaggaacggtgggttcggcgctgtccccgcgtcgagcaaggccatggccgagctgcaggaggcgatggcaagcgacgccagggaacgcgggtgcgctgtgtgcctggaggatttcgaggcgggagagaagctgacgaagatgccctgctcgcattgcttccatgcgacctgcatcttggattggctccgcctcagccatcgctgcccgctctgcagattcccgatgccaacccaagaccaatcgcactga
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| Protein seq | MMRGRRYTLLHSPPEAQRYTRYHQLPHREMRQRRWLRDYLASVSEEMDRRRLQARAGIDDHRLESLHRPRLGETREEACAVCLQDFGEKDEELRMMPCSHSFHQRCIFGWLAIRDNCPVCRSAMSSYNDVLEELHAELEQWIQRQRRGTATAIAMDGVVEEDAYRNGGFGAVPASSKAMAELQEAMASDARERGCAVCLEDFEAGEKLTKMPCSHCFHATCILDWLRLSHRCPLCRFPMPTQDQSH |
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| Function | E3 ubiquitin-protein ligase SIRP1 [UniProtKB/Swiss-Prot:Q6AVN2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0002930 | OsLiXu_11g0002930.01 | Chr11 | 2121623 | 2123959 | - | NAM | ||
| CDS seq | atgatgcggggaagaagatacacgctactgcacagcccaccggaggcacagcgatacactcgctatcatcagcttcctcacagggagatgcggcagcgaagatggctacgggattacttggccagcgttagcgaagagatggatcgaagacggctacaggcacgagccggcatcgacgaccatcgactggagtcgctgcaccggccgaggctgggggagacgagggaggaggcgtgcgccgtgtgcctgcaggatttcggggagaaagacgaggagctcaggatgatgccgtgctcgcactcgttccatcagcgctgcatcttcggttggcttgcgatcagagacaactgccccgtctgccgctcggcgatgtcctcgtacaacgatgttttggaggagctgcacgctgagctagagcaatggatacagcgtcagcgccgtggcactgccactgccattgccatggatggagtagtggaggaggatgcgtacaggaacggtgggttcggcgctgtccccgcgtcgagcaaggccatggccgagctgcaggaggcgatggcaagcgacgccagggaacgcgggtgcgctgtgtgcctggaggatttcgaggcgggagagaagctgacgaagatgccctgctcgcattgcttccatgcgacctgcatcttggattggctccgcctcagccatcgctgcccgctctgcagattcccgatgccaacccaagaccaatcgcactga
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| Protein seq | MMRGRRYTLLHSPPEAQRYTRYHQLPHREMRQRRWLRDYLASVSEEMDRRRLQARAGIDDHRLESLHRPRLGETREEACAVCLQDFGEKDEELRMMPCSHSFHQRCIFGWLAIRDNCPVCRSAMSSYNDVLEELHAELEQWIQRQRRGTATAIAMDGVVEEDAYRNGGFGAVPASSKAMAELQEAMASDARERGCAVCLEDFEAGEKLTKMPCSHCFHATCILDWLRLSHRCPLCRFPMPTQDQSH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0146750 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04590 | SBH | 0.079601 | 0.324713 | 0.765924 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0146750 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002960 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003010 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002960 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002940 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0037000 | SBH | 0.042774 | 0 | 0.256267 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003010 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0039500 | SBH | 0 | 0.013355 | 0.1900315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002940 | RBH | 0.0 | 0.0 | 0.625290 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003020 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002950 | RBH | 0.0 | 0.0 | 0.0 |
