Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0020180 | OGI:07010130 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:22980346-22984714 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcccgccggcctcctctccagacccgaaatcgccgccgccctctccaatctcctccgcgcctccacctcacatcggattgatcctccaccttcgccctcctccctgcgtcgcctcctcacctcgccgccgcatcgcctcctcagcaaccacggccgccggcctactctccagacgctccctcgctgccgccctcgcaaatctcctccgcgcgctctcatccctcccctaaccatcaccggccgcctccccttccaacctcccctagccatccgcccatcgccccctgcccaccgaagacggatttcaggtaatgtgcctcaaaccctttcaggtaatgtgcctaaagctttacgaagaccgccggccgccggcctgattatctcgatgggcgtactgaaaattctgaattagttgtcttggatgtgtagttagcgttagtgaggtggaggctttgttcgagctgttcaagagcattagtggttctgtgatcgacgatgggcttatcaataaggtgaacatctaactgtagcttgttgtggaattacaaaattaaaccttgccacattcgaatgtatatctccacatagaaaattaaagcttgtggtggatgcccttttctgtgaatcgttttgctatgcgggcagttctattcattcatatttgaagtgagcatggatctgtgtattatgtgtttgccttctaaattgtttaactttctgtgtaccaatatatgattttttttcctcaaagtttaataggaagatcttgttcccgatataaaccatctggctggacagatactatcacaatataacaacacaatgatagctcaaagtttgagtcactttcttcctgcaatgttgttccttttataagggagttaaacagtttagaagaatatgggtcagaattatattattattgatctgtttctgttgtttgctactgtaccacctatgcatgattaagtaccatcctattctgttaatgtacagtcaattgtgtattttttatgtaacatttgagtccatgtacttgtgagaaagataattttctggttgaaattgatggctgagtgtacataacatgcctcactgccagtggctactatttcagcgaaaaatagagcattttaagaaagaaaatgcagatgcaacacttttgtagtctagattagagtaaaatctacatgcatgcatgcaccttttgtagttatttgcaagttaatgtgtcggggttagattttacctgcgatttgtgtaaatgaatgtcggttcatcacttcatctttaagaaacatatgctgtcccggggaaagatgaaatggaaatattgtggtctactgttcagtttggataaaaatatggtggtctactgttcagtttggataaaaatatggtggtctactgtttagtttgaaaaaaaAtgttcttttcataatttattattgaaacctactgatattataaaggggcaattgcaaatttacccctattataaattgtacaaaaagctgattctgacatctactttttgaattattattggtcattctgaatataggagtagatcttctgaattccaagagggatctttgttcctttgatttttctttgtacttgtactttgcaagagctaacctatgatctattactgagttcgtactgaattcatattttcgtttgtatcttcaaaaagttcagaggtgtttctgtagtacagattcttcctttgtatctattgtggggttcatactgaatttacatttcctgttgtacacgcatggcttttcaattgttcaaatcctattaagagtcctgcaaaaaaaaatatatcaggaaggtacaaccatgcatttttggaactaagagtttgtcccatgatttggtttttctctttctaggtgcttcctcacttccaatctttcatggaatggcagccatattgtagattagtattcttgagaaatgtcataggaaatggatcatttcacaaatcataacaatttattcttggtaagtattaaggctggcccaatcatatcattttattcttgatttcatgttaacaagctggcccaattaaccattgatcaatatttttttTggaagataaacttcatttaataatgccatgaattggagaaggatgagaaaacaaattactagacaatattcagtggtattatttgggatgaaatgttttaggctcatatatttttatttacattccccttttctaccctctaagtaaataactgaaaatagatgtcttagcttcttttcgattctcagaaatttcgctaatttgagcaagttcagcagatcgccatgcataaccccgcagatcagagatctcatgtgtccatgtcctgttgtttccggtcgacatccttggttcatcattacctcaattgaaggtaaaagcagtttcttctctcttttttccctgttttccttgagtggttgatatgagaagataatatttttcctgtttttttttgcatgtgctggaatttagaataaaaacaattgctctcgttcatcacaaatctttatctattaagatatcatggttcagaatttatcgtggtttggttgttagaggggtttcagactgttactccgttagccattctaacgggatagaagcactacaatgttgtgtagttgcctggagaacatgacctaaaattgataaaatgatgacaaaatgaaggacatttcctttatctagaccatcatccctttatctgaataactctggttttttaattttttttaatccattcttgacatttggtatggtttgtggagttgttcagataacagctcaaatctggactctgctcttctttttttttaaaaaaaatgtaataagtttgaagttctgatgttatatccccaatccatgcatgctgtgttgctttcatcactaggcatcctagcatcatggattgagtaactacaattttggttgcggcaagtatttctgaaataacctattaccctgaataggatttatctgtacaatttagttaggtagcaaagatatagaatgcaatctactactactaacttgaaggcctgcacttcttaacctctacatttttggatctgcaaatcttgcactaatttgcctaaggacactcaaacaacattataatttgctgcacaacaccatggacattaaatttgaatactattataagaatggtatattgaatattttgtagtattgaaaaccacattctgaacattagttcaagttcagaaatccgcattcttgcaatgtatcttacctatttcagtacatgcaccatgtgtttttttcttcattttctgcagtacactctactcatctactttgctggtagcttttgcatgtcattatccccacatcatgatgtatgattttcagttttaggtgccagttttggtgtgaagaactaaattgaaaccgaacaatgattttccatagttgcggttaacttctaaacaagttagttctgcaatggataacaatggtggcggttcagcaccaatatcgtccaaaagatcatgtcattgtttcatccatccagccatggtaatatccattactcaattgatatatttttgcttcctaattttacgtacactcttcctttaggtctttttgtggatataactaatgtgattaatgccaagttgacaaataagcatgccgcggttatccaaagtgaaatcaatgttccaaaagaccgtgagaactatcaacagatcaacaagaactctacatataagattcagagagcctcaactattggatttggtatcatacttatattggctttctttttttttaatatatgagatatttgttttaggctaacatcagcattctgattttgtggtgcaggcaatgaaaataacgcttctgtcattaggcatgtgcggctaccatgtacagacaaagccgaattgtcgtacggtacacccaacatgcatgaagatgttactaatctcagtacggctgaactaaaaaggaagcgtgctagagagaggtacgcatcattgacaaaagagctaaaggaagatggaaacaagaagagacgtgattccagaaagcggaggaaggatgaatcaataggtttttataaattaacacatctattgttatcaaaatttggactttttgaacacaacaccttattattattgaattaattcaactctttcagatcattgatctcaagattccacgaccaaaatggctactcctgtgtcctcaactgtttcaggttgatgtgtaatatggtaacatgtagaaatttgttaggtgtttcgtaccaaatatgttctaatctgtttggatatgagcagcc
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| CDS seq | atgcccgccggcctcctctccagacccgaaatcgccgccgccctctccaatctcctccgcgcctccacctcacatcggattgatcctccaccttcgccctcctccctgcgtcgcctcctcacctcgccgccgcatcgcctcctcagcaaccacggccgccggcctactctccagacgctccctcgctgccgccctcgcaaatctcctccgcgcgctctcatccctcccctaaccatcaccggccgcctccccttccaacctcccctagccatccgcccatcgccccctgcccaccgaagacggatttcaggtaatgtgcctcaaaccctttcagttagcgttagtgaggtggaggctttgttcgagctgttcaagagcattagtggttctgtgatcgacgatgggcttatcaataagttgcggttaacttctaaacaagttagttctgcaatggataacaatggtggcggttcagcaccaatatcgtccaaaagatcatgtctttttgtggatataactaatgtgattaatgccaagttgacaaataagcatgccgcggttatccaaagtgaaatcaatgttccaaaagaccgtgagaactatcaacagatcaacaagaactctacatataagattcagagagcctcaactattggatttggcaatgaaaataacgcttctgtcattaggcatgtgcggctaccatgtacagacaaagccgaattgtcgtacggtacacccaacatgcatgaagatgttactaatctcagtacggctgaactaaaaaggaagcgtgctagagagaggtacgcatcattgacaaaagagctaaaggaagatggaaacaagaagagacgtgattccagaaagcggaggaaggatgaatcaatagatcattga
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| Protein seq | MPAGLLSRPEIAAALSNLLRASTSHRIDPPPSPSSLRRLLTSPPHRLLSNHGRRPTLQTLPRCRPRKSPPRALIPPLTITGRLPFQPPLAIRPSPPAHRRRISGNVPQTLSVSVSEVEALFELFKSISGSVIDDGLINKLRLTSKQVSSAMDNNGGGSAPISSKRSCLFVDITNVINAKLTNKHAAVIQSEINVPKDRENYQQINKNSTYKIQRASTIGFGNENNASVIRHVRLPCTDKAELSYGTPNMHEDVTNLSTAELKRKRARERYASLTKELKEDGNKKRRDSRKRRKDESIDH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0020180 | OsLiXu_07g0020180.01 | Chr07 | 22980346 | 22984714 | + | NAM | ||
| CDS seq | atgcccgccggcctcctctccagacccgaaatcgccgccgccctctccaatctcctccgcgcctccacctcacatcggattgatcctccaccttcgccctcctccctgcgtcgcctcctcacctcgccgccgcatcgcctcctcagcaaccacggccgccggcctactctccagacgctccctcgctgccgccctcgcaaatctcctccgcgcgctctcatccctcccctaaccatcaccggccgcctccccttccaacctcccctagccatccgcccatcgccccctgcccaccgaagacggatttcaggtaatgtgcctcaaaccctttcagttagcgttagtgaggtggaggctttgttcgagctgttcaagagcattagtggttctgtgatcgacgatgggcttatcaataagttgcggttaacttctaaacaagttagttctgcaatggataacaatggtggcggttcagcaccaatatcgtccaaaagatcatgtctttttgtggatataactaatgtgattaatgccaagttgacaaataagcatgccgcggttatccaaagtgaaatcaatgttccaaaagaccgtgagaactatcaacagatcaacaagaactctacatataagattcagagagcctcaactattggatttggcaatgaaaataacgcttctgtcattaggcatgtgcggctaccatgtacagacaaagccgaattgtcgtacggtacacccaacatgcatgaagatgttactaatctcagtacggctgaactaaaaaggaagcgtgctagagagaggtacgcatcattgacaaaagagctaaaggaagatggaaacaagaagagacgtgattccagaaagcggaggaaggatgaatcaatagatcattga
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| Protein seq | MPAGLLSRPEIAAALSNLLRASTSHRIDPPPSPSSLRRLLTSPPHRLLSNHGRRPTLQTLPRCRPRKSPPRALIPPLTITGRLPFQPPLAIRPSPPAHRRRISGNVPQTLSVSVSEVEALFELFKSISGSVIDDGLINKLRLTSKQVSSAMDNNGGGSAPISSKRSCLFVDITNVINAKLTNKHAAVIQSEINVPKDRENYQQINKNSTYKIQRASTIGFGNENNASVIRHVRLPCTDKAELSYGTPNMHEDVTNLSTAELKRKRARERYASLTKELKEDGNKKRRDSRKRRKDESIDH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.261734 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0001570 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009450 | SBH | 0.0 | 0.997065 | 4.000341 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003890 | SBH | 0.000000 | 4.674731 | 4.665294 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0003610 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020160 | RBH | 1.637709 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0018600 | RBH | 0.059847 | 0.158554 | 0.0077575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0009710 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0389700 | RBH | 0.0039965 | 0.292824 | 0.024434 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009190 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0020060 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009190 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004910 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000280 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
