Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0000280 | OGI:07010130 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:178092-180632 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caatggctcagattgccgagtgcagacgcgcacgcgttCccctctctcccgagcggtgccttagatccgtcttcctctcaaccgcttcctcgatcccctccgtatcaacagcggtcgccgatctgtcgccctgtcgccgatccgtcgtcgtgacgccgccttcatcctccttcctccccatcccctatcccccagcgcccgcattccccctccccctgccgacggcttctccaccgcgccggcgccggataggcgaggcgggagcacgcggccgcgggaaaagcagcaaccggtcaccccgccgccgcagaacgaggtcgcctggacggccgccgccgaggcctcccgctcctccatcctgttcaggtcagcgggcaggccgtgctacatgttctacgcttcgccggcgatggcggccaagcaggtactcatccattgcttcccccttcctcttctttaactgaatgaaaaatccttgcgtttttggcggttgagtaaggtcgtgtgcatcggtgagtgcatcacactgctgagttccatgtgtgatgaaagggggagggatgtgagcagattggattgtgatgatttttcagcagcgtgcgtatagatgaattggggagggatgtgagctgattggattgtgatgatttttcaccatgcatatccggacattgtgatgatttttcaatagcgtacctagagattagctgtcaggctctcaggcaaagcatagtaataacttcatctgcgtcttcaggatcattggcatgcataacaactgtgattctgcatgatctcaaaagggcagtaaatttttaatgatgaactactgcgggactcatatttttgtctctttgcacaaataaaaacgactagaatccactcattattatatttctttgtacacaaagatactagagcaaatatggcaaaggaacaaatgcaacagcaggaaaataaaaggaaaagaatcagatagaatgagactatacatatgttcaggagtgttgatgtacagattcttcctttgtatctattgtggggttcatactgaatttacatttcctgttgcacacgctggcttttcaattgttcaaatcctattaagagccctgcaaaaaaattatatcagactttttaatccattcttgacatttggtatggtttgtggagttgttcagataacagctcaaatctggactctgctcttcttttttttaaaaaaaaatgtaataagtttgaagttctgatgttatatccccaatccatgcatgttgtgttgcttgcatcactaggcatcctagcatcatagattgagtaacgacaattttggttgcggcaagtatttctgaaataacctattaccctgaataggatttatctgtacaatttaattaggtagcaaagatacagaatgcaatctactactactaacttgaaggcctgcacttcttaacctgtacattcttgaatctgcaaatcttgcactaatttgtctaaggacactcaaacaacattataatttgctgcacaacaccatggacattaaatctgaatactattataagaatggtatcttgaatattttgtagtattgaaaaccacattctgaacattagttgaagttcagaaatccatattattgcaatgtatcttacctatttcagtacatgcaccatgtttttttcttcattttctgcagtacagtctactcatctactttgctggtagcttttgcatgtcattatccccacatcatgatgtatgattttcagttttaggtgccagttttggtgtgaagaactaaattgaaaccgaacaatgatttttctaaagttgcggttaacttctaaacaagttagttctgcaatggatagcaatggtggcggttcagcaccaacatcgtgcaaaagaccaggtcattatttcatccatccagccatggtcatatccattactcacttgatataTttttgcttcctaattttacgtacgttcttcctttaggtccttttgtggatataactaatgtgattaatgccaagttgataaacaagcgtgccgcagttatccaatgtgaaatcaatgttccaaaagaccatgagaactgtcaacagatcaacaagaactctacatctaagattcagagagcctcaactattggatttggtatcatacttatattggctttcttttcttaatatatgagatatttgttttaggctaacatcagcattctgattttgtggtgcaggcaatgaaaataacgcttctgtcattaggcatgtgcatgaagatgcatgaagatgttactaatctcagtacggctgaactaaaaggaagagtgttagagagaggcacacatcattaacaaaagagctaaaggaagatagaaacaagaagagacgtgattccaaaaggcggaagaatgatgaatcaataggtttttataaattaacacatctattgttatcaaaatttggactttttgagcacaacaccttattattattgaattaattcaactctttcagatcatgg
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| CDS seq | atggctcagattgccgagtgcagacgcgcacgcgttCccctctctcccgagcggtgccttagatccgtcttcctctcaaccgcttcctcgatcccctccgtatcaacagcgtcgccgatccgtcgtcgtgacgccgccttcatcctccttcctccccatcccctatcccccagcgcccgcattccccctccccctgccgacggcttctccaccgcgccggcgccggataggcgaggcgggagcacgcggccgcgggaaaagcagcaaccggtcaccccgccgccgcagaacgaggtcgcctggacggccgccgccgaggcctcccgctcctccatcctgttcaggtcagcgggcaggccgtgctacatgttctacgcttcgccggcgatggcggccaagcagcaatggtggcggttcagcaccaacatcgtgcaaaagaccaggtcattatttcatccatccagccatggtccttttgtggatataactaatgtgattaatgccaagttgataaacaagcgtgccgcagttatccaatgtgaaatcaatgttccaaaagaccatgagaactgtcaacagatcaacaagaactctacatctaagattcagagagcctcaactattggatttggcaatgaaaataacgcttctgtcattaggcatgtgcatgaagatgcatga
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| Protein seq | MAQIAECRRARVPLSPERCLRSVFLSTASSIPSVSTASPIRRRDAAFILLPPHPLSPSARIPPPPADGFSTAPAPDRRGGSTRPREKQQPVTPPPQNEVAWTAAAEASRSSILFRSAGRPCYMFYASPAMAAKQQWWRFSTNIVQKTRSLFHPSSHGPFVDITNVINAKLINKRAAVIQCEINVPKDHENCQQINKNSTSKIQRASTIGFGNENNASVIRHVHEDA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0000280 | OsLaMu_07g0000280.02 | Chr07 | 178092 | 180395 | + | NAM | ||
| CDS seq | atgatttttctaaagttgcggttaacttctaaacaagttagttctgcaatggatagcaatggtggcggttcagcaccaacatcgtgcaaaagaccaggtccttttgtggatataactaatgtgattaatgccaagttgataaacaagcgtgccgcagttatccaatgtgaaatcaatgttccaaaagaccatgagaactgtcaacagatcaacaagaactctacatctaagattcagagagcctcaactattggatttggcaatgaaaataacgcttctgtcattaggcatgtgcatgaagatgcatga
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| Protein seq | MIFLKLRLTSKQVSSAMDSNGGGSAPTSCKRPGPFVDITNVINAKLINKRAAVIQCEINVPKDHENCQQINKNSTSKIQRASTIGFGNENNASVIRHVHEDA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0000280 | OsLaMu_07g0000280.01 | Chr07 | 178092 | 180395 | + | NAM | ||
| CDS seq | atggctcagattgccgagtgcagacgcgcacgcgttCccctctctcccgagcggtgccttagatccgtcttcctctcaaccgcttcctcgatcccctccgtatcaacagcgtcgccgatccgtcgtcgtgacgccgccttcatcctccttcctccccatcccctatcccccagcgcccgcattccccctccccctgccgacggcttctccaccgcgccggcgccggataggcgaggcgggagcacgcggccgcgggaaaagcagcaaccggtcaccccgccgccgcagaacgaggtcgcctggacggccgccgccgaggcctcccgctcctccatcctgttcaggtcagcgggcaggccgtgctacatgttctacgcttcgccggcgatggcggccaagcagcaatggtggcggttcagcaccaacatcgtgcaaaagaccaggtcattatttcatccatccagccatggtccttttgtggatataactaatgtgattaatgccaagttgataaacaagcgtgccgcagttatccaatgtgaaatcaatgttccaaaagaccatgagaactgtcaacagatcaacaagaactctacatctaagattcagagagcctcaactattggatttggcaatgaaaataacgcttctgtcattaggcatgtgcatgaagatgcatga
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| Protein seq | MAQIAECRRARVPLSPERCLRSVFLSTASSIPSVSTASPIRRRDAAFILLPPHPLSPSARIPPPPADGFSTAPAPDRRGGSTRPREKQQPVTPPPQNEVAWTAAAEASRSSILFRSAGRPCYMFYASPAMAAKQQWWRFSTNIVQKTRSLFHPSSHGPFVDITNVINAKLINKRAAVIQCEINVPKDHENCQQINKNSTSKIQRASTIGFGNENNASVIRHVHEDA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0000280 | OsLaMu_07g0000280.03 | Chr07 | 178183 | 180632 | + | IsoSeq | ||
| CDS seq | atcccctccgtatcaacagcggtcgccgatctgtcgccctgtcgccgatccgtcgtcgtgacgccgccttcatcctccttcctccccatcccctatcccccagcgcccgcattccccctccccctgccgacggcttctccaccgcgccggcgccggataggcgaggcgggagcacgcggccgcgggaaaagcagcaaccggtcaccccgccgccgcagaacgaggtcgcctggacggccgccgccgaggcctcccgctcctccatcctgttcaggtcagcgggcaggccgtgctacatgttctacgcttcgccggcgatggcggccaagcagttttaggtgccagttttggtgtgaagaacta
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| Protein seq | IPSVSTAVADLSPCRRSVVVTPPSSSFLPIPYPPAPAFPLPLPTASPPRRRRIGEAGARGRGKSSNRSPRRRRTRSPGRPPPRPPAPPSCSGQRAGRATCSTLRRRWRPSSFRCQFWCEEL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 178515 | 179969 | + | OsLaMu_07g0000280.02,OsLaMu_07g0000280.03 | OsLaMu_07g0000280.03,OsLaMu_07g0000280.01,OsLaMu_07g0000280.02 | All |
| A5 | Chr07 | 180009 | 180099 | + | OsLaMu_07g0000280.01 | OsLaMu_07g0000280.03,OsLaMu_07g0000280.01,OsLaMu_07g0000280.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0012450 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0012270 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0020160 | RBH | 1.637709 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000260 | RBH | 0.065711 | 0.140234 | 0.159119 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0002300 | RBH | 1.628102 | 1.779079 | 5.4039155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0044900 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0000290 | RBH | 0.0 | 0.568543 | 0.418973 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0044910 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000270 | RBH | 0.000000 | 0.000000 | 0.252402 |
