Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0044900 | OGI:07010130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:42573314-42575861 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgagatccatgatctgaaagagttgaattaattcaataataataaGgtgttgtgttcaaaaagtccaaattttgataacaatagatgtgttaatttataaaaacctattgattcatcattcttccgccttttggaatcacgtctcttcttgtttctatcttcctttagctcttttgttaatgatgtgtgcctctctctaacacgcttccttttagttcagccgtactgagattagtaacatcttcatgcatcttcatgcacatgcctaatgacagaagcgttattttcattgcctgcaccacaaaatcagaatgctgatgttagcctaaaacaaatatctcatatattaagaaaagaaagccaatataagtatgataccaaatccaatagttgaggctctctgaatcttagatgtagagttcttgttgatctgttgacagttctcatggtcttttggaacattgatttcacattggataaccgcggcacgcttgtttatcaacttggcattaatcacattagttatatccacaaaaggacctaaaggaagaacgtacgtaaaattaggaagcaaaaatatatcaagtgagtaatggatatgaccatggctggatggatgaaataatgacctggtcttttggacgatgttggtgctgaaccgccaccattgctatccattgcataactaacttgtttagaagttaaccgcaactttagaaaaatcattgttcggtttcaatttagttcttcacaccaaaactggcacctaaaactaaaaatcatacatcatgatgtggggataatgacatgcaaaagctaccagcaaagtagatgagtagactgtactgcagaaaatgaagaaaaaaacatggtgcatgtactgaaataggtaagatacattgcaataatatggatttctgaacttcaactaatgttcagaatgtggttttcaatactacaaaatattcaagatgccattcttataatagtattcagatttaatgtccatggtgttgtgcagcaaattataatgttgtttgagtgtccttagacaaattagtgcaagatttgcagattcaagaatgtacaggttaagaagtgcaggccttcaagttagtagtagtagattgcattctgtatctttgctacctaattaaattgtacagataaatcctattcagggtaataggttatttcagaaatacttgccgcaaccaaaattgtcgttactcaatctatgatgctaggatgcctagtgatgcaagcaacacaacatgcatggattggggatataacatcagaacttcaaacttattacatttttttttAaaaaaaaagaagagcagagtccagatttgagctgttatctgaacaactccacaaaccataccaaatgtcaagaatggattaaaaagtctgatataatttttttgcagggctcttaataggatttgaacaattgaaaagccagcgtgtgcaacaggaaatgtaaattcagtacgaaccccacaatagatacaaaggaagaatctgtacatcaacactcctgaacatatgtatagtctcattctatctgattcttttccttttattttcctgctgttgcatttgttcctttgccatatttgctctagtatctttgtgtacaaagaaatataataatgagtggattctagtcgtttttatttgtgcaaagagacaaaaatatgagtcccgcagtagttcatcattAaaaatttactgcccttttgagatcatgcagaatcacagttgttatgcatgccaatgatcctgaagacgcagatgaagttattactatgctttgcctgagagcctgacagctaatctctaggtacgctattgaaaaatcatcacaatgtccggatatgcatggtgaaaaatcatcacaatccaatcagctcacatccctccccaattcatctatacgcacgctgctgaaaaatcatcacaatccaatctgctcacatccctccccctttcatcacacatggaactcagcagtgtgatgcactcaccgatgcacacgaccttactcaaccgccaaaaacgcaaggatttttcattcagttaaagaagaggaagggggaagcaatggatgagtacctgcttggccgccatcgccggcgaagcgtagaacatgtagcacggcctgcccgctgacctgaacaggatggaggagcgggaggcctcggcggcggccgtccaggcgacctcgttctgcggcggcggggtgaccggttgctgcttttcccgcggccgcgtgctcccgcctcgcctatccggcgccggcgcggtggagaagccgtcggcagggggagggggaatgcgggcgctgggggataggggatggggaggaaggaggatgaaggcggcgtcacgacgacggatcggcgacagggcgacggatcggcgaccgctgttgatacggaggggatcgaggaagcggttgagaggaagacggatctaaggcaccgctcgggagagaggggaacgcgtgcgcgtctgcactcggcaatctgagccattg
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| CDS seq | atggctcagattgccgagtgcagacgcgcacgcgttcccctctctcccgagcggtgccttagatccgtcttcctctcaaccgcttcctcgatcccctccgtatcaacagcgtcgccgatccgtcgtcgtgacgccgccttcatcctccttcctccccatcccctatcccccagcgcccgcattccccctccccctgccgacggcttctccaccgcgccggcgccggataggcgaggcgggagcacgcggccgcgggaaaagcagcaaccggtcaccccgccgccgcagaacgaggtcgcctggacggccgccgccgaggcctcccgctcctccatcctgttcaggtcagcgggcaggccgtgctacatgttctacgcttcgccggcgatggcggccaagcagttgcggttaacttctaaacaagttagttatgcaatggatagcaatggtggcggttcagcaccaacatcgtccaaaagaccaggtccttttgtggatataactaatgtgattaatgccaagttgataaacaagcgtgccgcggttatccaatgtgaaatcaatgttccaaaagaccatgagaactgtcaacagatcaacaagaactctacatctaagattcagagagcctcaactattggatttggcaatgaaaataacgcttctgtcattaggcatgtgcatgaagatgcatga
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| Protein seq | MAQIAECRRARVPLSPERCLRSVFLSTASSIPSVSTASPIRRRDAAFILLPPHPLSPSARIPPPPADGFSTAPAPDRRGGSTRPREKQQPVTPPPQNEVAWTAAAEASRSSILFRSAGRPCYMFYASPAMAAKQLRLTSKQVSYAMDSNGGGSAPTSSKRPGPFVDITNVINAKLINKRAAVIQCEINVPKDHENCQQINKNSTSKIQRASTIGFGNENNASVIRHVHEDA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0044900 | OsLima_01g0044900.01 | Chr01 | 42573557 | 42575861 | - | NAM | ||
| CDS seq | atggctcagattgccgagtgcagacgcgcacgcgttcccctctctcccgagcggtgccttagatccgtcttcctctcaaccgcttcctcgatcccctccgtatcaacagcgtcgccgatccgtcgtcgtgacgccgccttcatcctccttcctccccatcccctatcccccagcgcccgcattccccctccccctgccgacggcttctccaccgcgccggcgccggataggcgaggcgggagcacgcggccgcgggaaaagcagcaaccggtcaccccgccgccgcagaacgaggtcgcctggacggccgccgccgaggcctcccgctcctccatcctgttcaggtcagcgggcaggccgtgctacatgttctacgcttcgccggcgatggcggccaagcagttgcggttaacttctaaacaagttagttatgcaatggatagcaatggtggcggttcagcaccaacatcgtccaaaagaccaggtccttttgtggatataactaatgtgattaatgccaagttgataaacaagcgtgccgcggttatccaatgtgaaatcaatgttccaaaagaccatgagaactgtcaacagatcaacaagaactctacatctaagattcagagagcctcaactattggatttggcaatgaaaataacgcttctgtcattaggcatgtgcatgaagatgcatga
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| Protein seq | MAQIAECRRARVPLSPERCLRSVFLSTASSIPSVSTASPIRRRDAAFILLPPHPLSPSARIPPPPADGFSTAPAPDRRGGSTRPREKQQPVTPPPQNEVAWTAAAEASRSSILFRSAGRPCYMFYASPAMAAKQLRLTSKQVSYAMDSNGGGSAPTSSKRPGPFVDITNVINAKLINKRAAVIQCEINVPKDHENCQQINKNSTSKIQRASTIGFGNENNASVIRHVHEDA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0044900 | OsLima_01g0044900.02 | Chr01 | 42573314 | 42575770 | - | IsoSeq | ||
| CDS seq | atcccctccgtatcaacagcggtcgccgatccgtcgccctgtcgccgatccgtcgtcgtgacgccgccttcatcctccttcctccccatcccctatcccccagcgcccgcattccccctccccctgccgacggcttctccaccgcgccggcgccggataggcgaggcgggagcacgcggccgcgggaaaagcagcaaccggtcaccccgccgccgcagaacgaggtcgcctggacggccgccgccgaggcctcccgctcctccatcctgttcaggtcagcgggcaggccgtgctacatgttctacgcttcgccggcgatggcggccaagcagttttaggtgccagttttggtgtgaagaacta
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| Protein seq | IPSVSTAVADPSPCRRSVVVTPPSSSFLPIPYPPAPAFPLPLPTASPPRRRRIGEAGARGRGKSSNRSPRRRRTRSPGRPPPRPPAPPSCSGQRAGRATCSTLRRRWRPSSFRCQFWCEEL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 42574024 | 42575438 | - | OsLima_01g0044900.02 | OsLima_01g0044900.01,OsLima_01g0044900.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045350 | RBH | 0.000000 | 0.027699 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0044930 | RBH | 0.000000 | 14.077952 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0672300 | RBH | 1.441202 | 3.263627 | 4.8714855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044440 | RBH | 0.0 | 0.444977 | 0.726831 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0002300 | RBH | 1.628102 | 1.779079 | 5.4039155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0044840 | RBH | 0.166844 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0045150 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045160 | RBH | 0.000000 | 0.826377 | 0.399946 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0044910 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000270 | RBH | 0.000000 | 0.000000 | 0.252402 |
