Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_07g0012270 | OGI:07010130 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr07:15136527-15138228 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttgtgaaaggctccgggatacaggatttcgtgaattctctaatgatgttctacgactttgtgtatcctgacctgaattcgtagctagaaaatcagtttcattattgttctgtgtctctccttgaactatgtagctcaaaggttcttcggatccttcattaagatcataatatgctatattgtttatcactgtaaatgggagacgtctaggtgtgatcgtgggttgttgagatacacttcttgtttgaacatagtacattgaactataaacaattgcaattgtgaaaccattcattgcaagtgcacgtaaggatatacattacctgttccctttgttgtaggggtgtccaataattcatcattactaacccattgttcccttcctgcgggatctccagcggtgacaatagaaatatctccaagcgtaggagtaggagtagaaaattttgacgtcgtagctttaggcacattacctgaaagagtttaattaataaaataataataatgagccaagatattcgtaaagctttaatttggatatagacatatatgcgtatatttatatataaaccttgagattcatccttcctccgcctcctggcatcacgtgccttcctgtttctatcttccttttgctctttggtcaatgatgcgtaccactctctagaacgcttattttttagttcagacgcgctgagattagtgacatctccatgagcatctgcacaaaaaatctgaggttcacacatacgcatatataaatataataaattgtcattttatacttgagttatttgaatggaccttctgcctggagaggcatggtatactcgctgggtgtactgtaggacatatcagaactgttagtaaatggtagacgcacaggcgttacaatagaacccacattttcagtgcctgcatcattaacatccaaccggccccctactgattgatcttcagtgcttgcaattttaatatcaccaaacggagctgctattgaaatgcaaacatattaaaaaatgtttttggcacaaatttacaaacatatttttagcagtgaccatatgacaactcaacctgaaacagatgaggccgtagtagtaattttttttgatgtcgcagcttgagacccattatctgaaagttcaattaatttaataataaagttttctgttcagagagtttagatacgctgcagtagagatttaaaccttgtgattcaaagttcctccgcttcctgatatctcgtgccttcttgtttctatcttccttttgctctttggtcaatgatgcataccactccctagcacgcttcctttttagttcagtcgcacttagttttgtaacatcttgaagagtgcatgcacacaaaaactgtgcttaatacaaaagccttaaaaagaaacaaaatatataatatagtgctacgcccaacctgtagagtccaagttgttgtgctggcaattctcacgatcttttggcacattagttccatttttattagcagcgggatggttgttcgtcaaattggcatcaattacattagttatatcagcaaaaggacctgagggaggagtgatcctcatattagcaagcaataatatatcaattgagcgataaatataacattagctagatggatgaaaatgtcacctgatcttgttgacgatgttggcacagaactcccaccattgttatccat
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| CDS seq | atggataacaatggtgggagttctgtgccaacatcgtcaacaagatcaggtccttttgctgatataactaatgtaattgatgccaatttgacgaacaaccatcccgctgctaataaaaatggaactaatgtgccaaaagatcgtgagaattgccagcacaacaacttggactctacagatgttacaaaactaagtgcgactgaactaaaaaggaagcgtgctagggagtggtatgcatcattgaccaaagagcaaaaggaagatagaaacaagaaggcacgagatatcaggaagcggaggaactttgaatcacaagataatgggtctcaagctgcgacatcaaaaaaaattactactacggcctcatctgtttcagctccgtttggtgatattaaaattgcaagcactgaagatcaatcagtagggggccggttggatgttaatgatgcaggcactgaaaatgtgggttctattgtaacgcctgtgcgtctaccatttactaacagttctgatatgtcctacagtacacccagcgagtataccatgcctctccaggcagaagatgctcatggagatgtcactaatctcagcgcgtctgaactaaaaaataagcgttctagagagtggtacgcatcattgaccaaagagcaaaaggaagatagaaacaggaaggcacgtgatgccaggaggcggaggaaggatgaatctcaaggtaatgtgcctaaagctacgacgtcaaaattttctactcctactcctacgcttggagatatttctattgtcaccgctggagatcccgcaggaagggaacaatgggttagtaatgatgaattattggacacccctacaacaaagggaacaggtaatgtatatccttacgtgcacttgcaatga
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| Protein seq | MDNNGGSSVPTSSTRSGPFADITNVIDANLTNNHPAANKNGTNVPKDRENCQHNNLDSTDVTKLSATELKRKRAREWYASLTKEQKEDRNKKARDIRKRRNFESQDNGSQAATSKKITTTASSVSAPFGDIKIASTEDQSVGGRLDVNDAGTENVGSIVTPVRLPFTNSSDMSYSTPSEYTMPLQAEDAHGDVTNLSASELKNKRSREWYASLTKEQKEDRNRKARDARRRRKDESQGNVPKATTSKFSTPTPTLGDISIVTAGDPAGREQWVSNDELLDTPTTKGTGNVYPYVHLQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_07g0012270 | OsKeNa_07g0012270.01 | Chr07 | 15136527 | 15138228 | - | NAM | ||
| CDS seq | atggataacaatggtgggagttctgtgccaacatcgtcaacaagatcaggtccttttgctgatataactaatgtaattgatgccaatttgacgaacaaccatcccgctgctaataaaaatggaactaatgtgccaaaagatcgtgagaattgccagcacaacaacttggactctacagatgttacaaaactaagtgcgactgaactaaaaaggaagcgtgctagggagtggtatgcatcattgaccaaagagcaaaaggaagatagaaacaagaaggcacgagatatcaggaagcggaggaactttgaatcacaagataatgggtctcaagctgcgacatcaaaaaaaattactactacggcctcatctgtttcagctccgtttggtgatattaaaattgcaagcactgaagatcaatcagtagggggccggttggatgttaatgatgcaggcactgaaaatgtgggttctattgtaacgcctgtgcgtctaccatttactaacagttctgatatgtcctacagtacacccagcgagtataccatgcctctccaggcagaagatgctcatggagatgtcactaatctcagcgcgtctgaactaaaaaataagcgttctagagagtggtacgcatcattgaccaaagagcaaaaggaagatagaaacaggaaggcacgtgatgccaggaggcggaggaaggatgaatctcaaggtaatgtgcctaaagctacgacgtcaaaattttctactcctactcctacgcttggagatatttctattgtcaccgctggagatcccgcaggaagggaacaatgggttagtaatgatgaattattggacacccctacaacaaagggaacaggtaatgtatatccttacgtgcacttgcaatga
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| Protein seq | MDNNGGSSVPTSSTRSGPFADITNVIDANLTNNHPAANKNGTNVPKDRENCQHNNLDSTDVTKLSATELKRKRAREWYASLTKEQKEDRNKKARDIRKRRNFESQDNGSQAATSKKITTTASSVSAPFGDIKIASTEDQSVGGRLDVNDAGTENVGSIVTPVRLPFTNSSDMSYSTPSEYTMPLQAEDAHGDVTNLSASELKNKRSREWYASLTKEQKEDRNRKARDARRRRKDESQGNVPKATTSKFSTPTPTLGDISIVTAGDPAGREQWVSNDELLDTPTTKGTGNVYPYVHLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0164700 | SBH | 0.439502 | 0.619368 | 1.216069 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0164700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0003790 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009260 | RBH | 0.654457 | 5.682435 | 2.466186 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003890 | SBH | 0.000000 | 4.674731 | 4.665294 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0003610 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009250 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0009710 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009190 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009230 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0003740 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009340 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016110 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001220 | RBH | 0.0 | 0.0 | 0.0 |
