Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_07g0003610 | OGI:07010130 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr07:3111828-3112803 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTATTGTTTGAAGCTGTAGGACATATCAGAACTGTTAGTAAATGGTAGACGCACAGGCGTTACAATAGAACCCACATTTTCAGTGCCTGCATCATTAACATCCAACCGGCCCCCTACTGATTGATCTTCAGTGCTTGCAATTTTAATATCACCAAACGGAGCTGCTATTGAAATGCAAACATATTAAAAAATGTTTTTGGCACAAATTTACAAACATATTTTTAGCAGTGACCATATGACAACTCAACCTGAAACAGATGAGGCCGTAGTAGTAATTTTTTTTGATGTCGCAGCTTGAGACCCATTATCTGAAAGTTCAATTAATTTAATAATAAAGTTTTCTGTTCAGAGAGTTTAGATATGCTGCAGTAGAGATTTAAACCTTGTGATTCAAAGTTCCTCCGCTTCCTGATATATCGTGCCTTCTTGTTTCTATCTTCCTTTTGCTCTTTGGTCAATGATGCATACCACTCCCTAGCACGCTTCCTTTTTAGTTCAGTCGCACTTAGTTTTGTAACATCTTGAAGAGTGCATGCACACAAAAACTGTGCTTAATACAAAAGCCTTAAAAAGAAACAAAATATATAATATAGTGCTACGCCCAACCTGTAGAGTCCAAGTTGTTGTGCTGGCAATTCTCATGATCTTTTGGCACATTAGTTCCATTTTTATTAGCAGCGGGATGGTTGTTCGTCAAATTGGCATCAATTACATTAGTTATATCTGCAAAAGGACCTGAGGGAGGAGTGATCCTCATATTAGCAAGCAATAATATATCAATTGAGCGATAAATATAACATTAGCTAGATGGATGAAAATGTCACCTGATCTTGTTGACGATGTTGGCACAGAACTCCCACCATTGTTATCCATTGCAGAACAAACAATCTTAAATTGGAAATTGGAAGCAAATATGAGGATTATGCAATTGAAAATCTGAGGTATTAAATAATGTATGTGAGCAATTCGACCA
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| CDS seq | ATGGATAACAATGGTGGGAGTTCTGTGCCAACATCGTCAACAAGATCAGATGTTACAAAACTAAGTGCGACTGAACTAAAAAGGAAGCGTGCTAGGGAGTGGTATGCATCATTGACCAAAGAGCAAAAGGAAGATAGAAACAAGAAGGCACGATATATCAGGAAGCGGAGGAACTTTGAATCACAAGATAATGGGTCTCAAGCTGCGACATCAAAAAAAATTACTACTACGGCCTCATCTGTTTCAGCTCCGTTTGGTGATATTAAAATTGCAAGCACTGAAGATCAATCAGTAGGGGGCCGGTTGGATGTTAATGATGCAGGCACTGAAAATGTGGGTTCTATTGTAACGCCTGTGCGTCTACCATTTACTAACAGTTCTGATATGTCCTACAGCTTCAAACAATACTAA
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| Protein seq | MDNNGGSSVPTSSTRSDVTKLSATELKRKRAREWYASLTKEQKEDRNKKARYIRKRRNFESQDNGSQAATSKKITTTASSVSAPFGDIKIASTEDQSVGGRLDVNDAGTENVGSIVTPVRLPFTNSSDMSYSFKQY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_07g0003610 | OsARC_07g0003610.01 | Chr07 | 3111828 | 3112803 | - | NAM | ||
| CDS seq | ATGGATAACAATGGTGGGAGTTCTGTGCCAACATCGTCAACAAGATCAGATGTTACAAAACTAAGTGCGACTGAACTAAAAAGGAAGCGTGCTAGGGAGTGGTATGCATCATTGACCAAAGAGCAAAAGGAAGATAGAAACAAGAAGGCACGATATATCAGGAAGCGGAGGAACTTTGAATCACAAGATAATGGGTCTCAAGCTGCGACATCAAAAAAAATTACTACTACGGCCTCATCTGTTTCAGCTCCGTTTGGTGATATTAAAATTGCAAGCACTGAAGATCAATCAGTAGGGGGCCGGTTGGATGTTAATGATGCAGGCACTGAAAATGTGGGTTCTATTGTAACGCCTGTGCGTCTACCATTTACTAACAGTTCTGATATGTCCTACAGCTTCAAACAATACTAA
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| Protein seq | MDNNGGSSVPTSSTRSDVTKLSATELKRKRAREWYASLTKEQKEDRNKKARYIRKRRNFESQDNGSQAATSKKITTTASSVSAPFGDIKIASTEDQSVGGRLDVNDAGTENVGSIVTPVRLPFTNSSDMSYSFKQY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0164700 | SBH | 0.439502 | 0.619368 | 1.216069 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g07030 | SBH | 0.305181 | 0.427742 | 0.294512 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0164700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0003790 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0003760 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0003890 | SBH | 0.000000 | 4.674731 | 4.665294 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009250 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0057400 | SBH | 0.01465 | 0.7241645 | 0.346542 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0009710 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0060700 | SBH | 1.4498125 | 8.657779 | 6.9319895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0003740 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009340 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
