Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0004290 | OGI:06004660 | 3/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:2977912-2978870 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacggcgcagatttgatctcgggagacatcacgcggatcgcgatccgtgggagcatgagctctgcgctgtgattggttgcagcagctgcgcgcggatctcgttcgcatcccgcgcggggcccccccgcgcctcccccaaattccgaacccccaaaatttcgcccaaatttcgaacattttcactgcgcgcgtatgcgaatgcgaatccctcccaaatttcacgcctatttaaacaccgccgaatcccaccctctcaatccaccaccgccaagtctcaactccaaagaactcacccgccgccgccgccgccgccgccgccgcggcctcgccttctccgccgcgccaagctctcctctcctcctcctcgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccgaggaagcagctggcgaccaaggcggcgcggaagtcggccccggccaccggcggcgtgaagaagcctcaccgcttcaggcccggcaccgtcgcgctccgtgagatccgcaagtaccagaagagcacggagctgctcatccgcaagctccccttccagcgcctcgtccgcgagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtcgccgcgctgcaggaggccgccgaggcgtacctcgtcgggctgttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcgcgccggatccgcggcgagcgcgcttaggcgatccgccctcctttggttcttgcttgattcgtagggacttgtcatgttctaccagttgatgttattattagatcctcgctttgtcatgtcgtagtcttagattcttagttgccatggttgcaatgtaattgctggttattctgaaattgcaatcgaagcaatctgttttatcccc
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| CDS seq | atggacggcgcagatttgatctcgggagacatcacgcggatcgcgatccgtgggagcatgagctctgcgctcagctgcgcgcggatctcgttcgcatcccgcgcggggcccccccgcgcctcccccaaattccgaacccccaaaatttcgcccaaatttcgaacattttcactgcgcgcgtatgcgaatgcgaatccctcccaaatttcacgcctatttaaacaccgccgaatcccaccctctcaatccaccaccgccaagcccggcaccgtcgcgctccgtgagatccgcaagtaccagaagagcacggagctgctcatccgcaagctccccttccagcgcctcgtccgcgagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtcgccgcgctgcaggaggccgccgaggcgtacctcgtcgggctgttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcgcgccggatccgcggcgagcgcgcttag
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| Protein seq | MDGADLISGDITRIAIRGSMSSALSCARISFASRAGPPRASPKFRTPKISPKFRTFSLRAYANANPSQISRLFKHRRIPPSQSTTAKPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.2 [UniProtKB/Swiss-Prot:Q76MV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004290 | OsLiXu_06g0004290.01 | Chr06 | 2977912 | 2978692 | + | NAM | ||
| CDS seq | atggacggcgcagatttgatctcgggagacatcacgcggatcgcgatccgtgggagcatgagctctgcgctcagctgcgcgcggatctcgttcgcatcccgcgcggggcccccccgcgcctcccccaaattccgaacccccaaaatttcgcccaaatttcgaacattttcactgcgcgcgtatgcgaatgcgaatccctcccaaatttcacgcctatttaaacaccgccgaatcccaccctctcaatccaccaccgccaagcccggcaccgtcgcgctccgtgagatccgcaagtaccagaagagcacggagctgctcatccgcaagctccccttccagcgcctcgtccgcgagatcgcccaggacttcaagaccgacctccgcttccagagctccgccgtcgccgcgctgcaggaggccgccgaggcgtacctcgtcgggctgttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggacatccagctcgcgcgccggatccgcggcgagcgcgcttag
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| Protein seq | MDGADLISGDITRIAIRGSMSSALSCARISFASRAGPPRASPKFRTPKISPKFRTFSLRAYANANPSQISRLFKHRRIPPSQSTTAKPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0004290 | OsLiXu_06g0004290.02 | Chr06 | 2978175 | 2978870 | + | IsoSeq | ||
| CDS seq | accaccgccaagtctcaactccaaagaactcacccgccgccgccgccgccgccgccgccgcggcctcgccttctccgccgcgccaagctctcctctcctcctcctcgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccgaggaagcagctggcgaccaaggcggcgcggaagtcggccccggccaccggcg
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| Protein seq | TTAKSQLQRTHPPPPPPPPPRPRLLRRAKLSSPPPRWPARSRRRASPPAGRRRGSSWRPRRRGSRPRPPA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.024075 | 0.202983 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0160100 | SBH | 0.0 | 0.0 | 0.764042 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06510 | SBH | 0.0 | 0.0 | 0.198458 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0160100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004400 | SBH | 0.000000 | 10.398747 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004300 | SBH | 0.0 | 5.564845 | 2.680020 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004270 | SBH | 0.0 | 2.906731 | 2.020874 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004370 | RBH | 0.0 | 0.821763 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004260 | SBH | 0.0 | 54.030354 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0051500 | SBH | 34.9328365 | 11.429545 | 5.9037175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004160 | SBH | 0.000000 | 1.673825 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0052300 | SBH | 8.8854 | 0.127543 | 23.891302 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004400 | SBH | 0.0 | 0.078698 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004260 | RBH | 0.000000 | 29.946260 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004310 | SBH | 1.389897 | 22.960903 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0026730 | SBH | 0.0 | 0.0 | 0.336072 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004160 | SBH | 0.0 | 13.368560 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004090 | RBH | 0.0 | 9.299397 | 3.668125 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004300 | SBH | 0.000000 | 14.427197 | 0.000000 |
