Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0160100 | OGI:06004610 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:3055907-3057961 | ||||||||
| Gene Symbol | H3R-11 | ||||||||||
| DNA seq | TTGGTTGGAGCAGCTGCGCGCGGATCGCGTTCGCATCCCGCGCGGGGCCGCGCCTCCCCCAAATTCCAAACCCCCAAAATTTCGCCCAAATTTCGAACATTTTCACTGCGCGCGTACTATGCGAATGCGAATCCCTCCCAAATTTCACGCCTATTTAAACACCGCCGAATCCCACCGCCTCAATCCACCACCGCCAAGTTTCAAATCCAAAGAACTCACTCGCCGCCGCCTCCGCCGCGCCAAGCTCTCCTCTCCTCCTTCTCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGGAAGGCGCCGAGGAAACAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCAGGCCGGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCCCTGCAGGAGGCCGCGGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGGATCCGCGGCGAGCGCGCTTAGGCCATCAGCCCACCTTTGGTTCTTGCTTGATTCATAGGGACTTGTCATGTTCTACCAGTTGGTGTTATTATTAGATCGTCGCTTTGTCATGTCGTAGTCTTAGATTCTTAGTTTCCATGGTTGCAATGTAACTGCTGGTTATTCTGAAATTGCAATCGAAGTAATCTGTTTTATCCCCAAATTTCTGTGTCCATCTTGATCCTGTGAACAGATTGCCTTTGACTGGATGATGTGATGTTCAGAATGTTTCTGAAGTTATTCTGATGATCTGAACTGAATATTTCGGTTATCCTAGTACTTGTCCTGTTCTGTTTGATATTCAGAAATCAAAATGGTTCTGAAGTTTTCCGATTGCTGGTATGGATTTGCAGCATTTGTCCCCAAGATTGGAAGTAGTAGTGTTTTTCTCAAAAGGAAAAGCATTGAAAAGAATTGCAGTTCAAGTCTCTGTTATATTCATACATAAAGGCAAGTACTCTATACTTCTGTAGTCTGTTTCATAATGCTCAAAATCTGCAATTCAAGTCTCGGTACCGTAGTACTGTGTATTAGTAGGATATACAATAAACATGATTTTATTCTTAGTTGAAGGTTTGAATATCAAACCTCTTTATGTACTACTGACTACTGAGACTTTCATACTATTTACAACATCTCTTTTCCAGAAGATGTGCTTTCCTGTCATATTCTGGTTTCAGCAACTAAGTATGACTAGATTGGTGCTGTGATTATGCTATGGGCTGTAGGTGGCAAAGTTTGGAAAGATCAAAAGGTGGATATGAATATGAGCCGCTCATCAAGGAAGATGCTATGATCTTGTTTGCAGCTTCTGTCGCATGGATTCCATCCCAGCTCACGTAGTTCTGTGGATCAGCACAAGCTTTTGCGGTTACCGTTTGGCCATTCAGCAATTTGCTGCTTCCACAGTACACATCTGGGTTGAAATTGTAAGCCCCATCACCATATCCGCAGCAAGCCTTAGTCCCATACTTCAGCCCTGAAACCATGGTCAATCAGATCAGTATCACAACAATTGCTGACAATAAGCAAGATTGATTCATGTAATACTTGAAACTGCATAATGTACCACTACTAGAGAGCATATACCATGAGCTTTAGGATGGCGAAACAGCTCGAGCGTCACAGCGTGTTTGTCAAGATACACAATAGATGCATCCTGCAGCTTCTTCCTAACCTCGGCCAAGCTATTGTTCAGCAGTTCATTGTAGTAGGTCACTGCACTGTTGTAGGTTTTCATGCAACCATATCCATCCATGTCATTGCTGGTATGCGGGAGTTTCGTGAGGAATGCCGGGTAGCATCCGATAGGCGCCATGTTAAACACCATAATGTTGCGAGCGCCAATGTTGTACAATTCCT
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| CDS seq | TTGGTTGGAGCAGCTGCGCGCGGATCGCGTTCGCATCCCGCGCGGGGCCGCGCCTCCCCCAAATTCCAAACCCCCAAAATTTCGCCCAAATTTCGAACATTTTCACTGCGCGCGTACTATGCGAATGCGAATCCCTCCCAAATTTCACGCCTATTTAAACACCGCCGAATCCCACCGCCTCAATCCACCACCGCCAAGTTTCAAATCCAAAGAACTCACTCGCCGCCGCCTCCGCCGCGCCAAGCTCTCCTCTCCTCCTTCTCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGGAAGGCGCCGAGGAAACAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCAGGCCGGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCCCTGCAGGAGGCCGCGGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGGATCCGCGGCGAGCGCGCTTAG
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| Protein seq | LVGAAARGSRSHPARGRASPKFQTPKISPKFRTFSLRAYYANANPSQISRLFKHRRIPPPQSTTAKFQIQRTHSPPPPPRQALLSSFSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.2 [UniProtKB/Swiss-Prot:Q76MV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0160100 | Os06t0160100-00 | Chr06 | 3055907 | 3057961 | + | irgsp1_rep | ||
| CDS seq | TTGGTTGGAGCAGCTGCGCGCGGATCGCGTTCGCATCCCGCGCGGGGCCGCGCCTCCCCCAAATTCCAAACCCCCAAAATTTCGCCCAAATTTCGAACATTTTCACTGCGCGCGTACTATGCGAATGCGAATCCCTCCCAAATTTCACGCCTATTTAAACACCGCCGAATCCCACCGCCTCAATCCACCACCGCCAAGTTTCAAATCCAAAGAACTCACTCGCCGCCGCCTCCGCCGCGCCAAGCTCTCCTCTCCTCCTTCTCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGGAAGGCGCCGAGGAAACAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCAGGCCGGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCCCTGCAGGAGGCCGCGGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGGATCCGCGGCGAGCGCGCTTAG
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| Protein seq | LVGAAARGSRSHPARGRASPKFQTPKISPKFRTFSLRAYYANANPSQISRLFKHRRIPPPQSTTAKFQIQRTHSPPPPPRQALLSSFSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0160001 | RBH | 0.0 | 0.0 | 1.136173 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06510 | RBH | 0.0 | 0.0 | 0.198458 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0160001 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004420 | SBH | 0.0 | 9.597145 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0002180 | SBH | 3.352329 | 30.645050 | 29.186939 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004220 | RBH | 0.0 | 7.543982 | 2.437752 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004340 | RBH | 0.0 | 0.778115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0002130 | SBH | 48.881958 | 187.964523 | 123.544121 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0051900 | RBH | 23.9616425 | 7.6895835 | 3.0184635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004180 | RBH | 0.0 | 1.921420 | 0.736653 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0052300 | RBH | 8.8854 | 0.127543 | 23.891302 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004390 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004230 | SBH | 0.0 | 32.718735 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004310 | RBH | 1.389897 | 22.960903 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004260 | RBH | 0.0 | 0.475796 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004140 | RBH | 0.0 | 4.611737 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004110 | RBH | 0.0 | 7.660655 | 1.114456 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004330 | SBH | 0.0 | 19.625826 | 2.019603 |
