Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g06510 | OGI:06004610 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:3056088-3056861 | ||||||||
| Gene Symbol | H3 | ||||||||||
| DNA seq | AATCCACCACCGCCAAGTTTCAAATCCAAAGAACTCACTCGCCGCCGCCTCCGCCGCGCCAAGCTCTCCTCTCCTCCTTCTCGATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGGAAGGCGCCGAGGAAACAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCAGGCCGGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCCCTGCAGGAGGCCGCGGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGGATCCGCGGCGAGCGCGCTTAGGCCATCAGCCCACCTTTGGTTCTTGCTTGATTCATAGGGACTTGTCATGTTCTACCAGTTGGTGTTATTATTAGATCGTCGCTTTGTCATGTCGTAGTCTTAGATTCTTAGTTTCCATGGTTGCAATGTAACTGCTGGTTATTCTGAAATTGCAATCGAAGTAATCTGTTTTATCCCCAAATTTCTGTGTCCATCTTGATCCTGTGAACAGATTGCCTTTGACTGGATGATGTGATGTTCAGAATGTTTCTGAAGTTATTCTGATGATCTGAACTGAATA
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| CDS seq | ATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGGAAGGCGCCGAGGAAACAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCAGGCCGGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCCCTGCAGGAGGCCGCGGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGGATCCGCGGCGAGCGCGCTTAG
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.2 [UniProtKB/Swiss-Prot:Q76MV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g06510 | LOC_Os06g06510.1 | Chr06 | 3056088 | 3056861 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGGAAGGCGCCGAGGAAACAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCAGGCCGGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCCCTGCAGGAGGCCGCGGAGGCGTACCTCGTCGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCGCGCCGGATCCGCGGCGAGCGCGCTTAG
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.198458 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0160100 | RBH | 0.0 | 0.0 | 0.764042 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06460 | RBH | 0.0 | 0.0 | 0.695952 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0160100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004420 | RBH | 0.0 | 9.597145 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0002180 | SBH | 3.352329 | 30.645050 | 29.186939 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004220 | RBH | 0.0 | 7.543982 | 2.437752 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004340 | RBH | 0.0 | 0.778115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0002130 | SBH | 48.881958 | 187.964523 | 123.544121 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0051900 | RBH | 23.9616425 | 7.6895835 | 3.0184635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004160 | SBH | 0.000000 | 1.673825 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0052300 | RBH | 8.8854 | 0.127543 | 23.891302 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004400 | RBH | 0.0 | 0.078698 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004230 | RBH | 0.0 | 32.718735 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004300 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004260 | SBH | 0.0 | 0.475796 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004150 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004110 | RBH | 0.0 | 7.660655 | 1.114456 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004300 | SBH | 0.000000 | 14.427197 | 0.000000 |
