Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0160001 | OGI:06004610 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:3055212-3055622 | ||||||||
| Gene Symbol | H3R-11, H3, - | ||||||||||
| DNA seq | TCAGGCGCGCTCACCGCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTAGTGTCCTCGAAGAGCCCGACGAGGTACGCCTCCGCGGCCTCCTGCAGCGCGGCGACGGCGGAGCTCTGGAAGCGGAGGTCGGTCTTGAAGTCCTGGGCGATCTCGCGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGAGCAGCTCCGTGCTCTTCTGGTACTTGCGGATCTCACGGAGCGCGACGGTGCCCGGCCTGAAGCGGTGCGGCTTCTTCACGCCGCCGGTGGCCGGCGCCGACTTGCGCGCCGCCTTGGTCGCCAGCTGCTTCCTCGGCGCCTTCCCGCCGGTGGACTTGCGCGCCGTCTGCTTCGTGCGGGCCAT
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| CDS seq | ATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGGAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCAGGCCGGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCGCTGCAGGAGGCCGCGGAGGCGTACCTCGTCGGGCTCTTCGAGGACACTAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGTGAGCGCGCCTGA
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.2 [UniProtKB/Swiss-Prot:Q76MV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0160001 | OsNip_06t0160001-00 | Chr06 | 3055212 | 3055622 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCCGCACGAAGCAGACGGCGCGCAAGTCCACCGGCGGGAAGGCGCCGAGGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCGCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCAGGCCGGGCACCGTCGCGCTCCGTGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCAAGCTCCCCTTCCAGCGCCTCGTCCGCGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCGCCGCGCTGCAGGAGGCCGCGGAGGCGTACCTCGTCGGGCTCTTCGAGGACACTAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGTGAGCGCGCCTGA
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.136173 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0160100 | SBH | 0.0 | 0.0 | 0.764042 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06460 | SBH | 0.0 | 0.0 | 0.695952 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0160100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004400 | SBH | 0.000000 | 10.398747 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0002180 | SBH | 3.352329 | 30.645050 | 29.186939 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004270 | SBH | 0.0 | 2.906731 | 2.020874 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004340 | SBH | 0.0 | 0.778115 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0002130 | SBH | 48.881958 | 187.964523 | 123.544121 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0051500 | RBH | 34.9328365 | 11.429545 | 5.9037175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004160 | RBH | 0.000000 | 1.673825 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0052300 | SBH | 8.8854 | 0.127543 | 23.891302 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004380 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004230 | SBH | 0.0 | 32.718735 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004290 | SBH | 5.579868 | 27.333143 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004260 | RBH | 0.0 | 0.475796 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004140 | RBH | 0.0 | 4.611737 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004110 | RBH | 0.0 | 7.660655 | 1.114456 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004330 | SBH | 0.0 | 19.625826 | 2.019603 |
