Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0028860 | OGI:04004540 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:35262251-35265674 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actgatcgatcatcctcaggtgtctccagcccgctagagatgagcgcaggagaagacggagtttatttcaggatgagattcttcttcttcttcttcttggttgtgctatgcttgctagattccaatatctccacgtcccatggctgcttcgtggaggagaggacggcgatgatggacattggctcctctctgacgcgctcaaacggcacggtgccgccatcatgggggcgcggcgacggtgacgacgactgctgcttgtgggagcgcgtcaaatgcagcaacatcactgggcgagtatcacatctctacttctcaaacctgtatgattctctggaagtgctaaatgcacatggtgactcgttttggcgtttcaacacgacggtcttctcctcattcccggagcttcagttcctggatctgtccagtatctatcccagttctctaaatatcgatggtatgtgcacagtgtccatcctgaataaccaagattgctccttgcttttgcaatgactaatattttcagacaaactatcataggcttggtagggctgaagctgcccaagctacagcatctcaacctcagttataactggttgcaagagagtatcctcgcagatcttggggaactggtttcgcttgaagtcctagatgccagctccaacgccatgagtggagttgttcccactgcaggtacagaaatggatatttagaatgaacatagttcagtaaagaattagcatcttgtacatgtgatgattatatttgtaacatcttgtacatgtgctgttatatttgtaacattattgcagttttaaaaaatcttacgaatctgaaggagctgaatttgagtgccaacggattcagcggaagccttccggggtcattacttgaactacctcaccttgatccctcaggaagttcgttagcaggacgtactccaattaattcatctttggagccagtttcactacaagtattaaatctcaacaacaacaggatgagtggagctcttccaaccgaacgaggtaaaaataatggacatttcatgcttgatcataacatctgggcaagattttctatgatgctgattataactgattcattgtattcatactttgcgcagcattcggatatctaaggaacctacgagaattgcatttgagttccaataacttcactggaaacatttctactttcttgctttcacttccacatattgaacgattggatctctcgggaaatacttttgaaggacctatccctataactccatcttcaaatctttctctgtctctcaaaggtcttcggttttcccagaacaatctgagtggtaaactctcatttttttggctgaggaacctcactaaacttgaagaaatcaacttgtcagggaatattaatttagcagttgatgtcaatattcctggatgggcacctccattccaactgaaacagttagctctctctggttgtggtcttgacaaaggcataattgcagaaccacactttctacgcacacaacatcatttgcaggagcttgacttgtcaaacaataacttgtcaggaagaatgccgaattggctttttacaaaagaagcaactctggttaacctaaaccttggaaataactcgctaactggatctctaagtcccatatggcacccccaaacagctctacaatctattgttatatctaccaaccgtattacagggaagctacctgccaacttcagcgcaatatttccaagcttgtccactctggatttgtcagacaataactttcatggagaaattccgatgtcactgtgcagcatcaaacacatgaaggacttgagcttatcaaacaataatttttctggtaaaatgccgacttgtgtgttcactgattttcttgagctgtggaccttgagtgcctcaaacaaccagcttggaggtctggtgtttggtgggatgaaaaaactgtccatcgggtttgcaatgcacctacagaacaacaaatttgaaggaacactgcctcgtaatctgtcaggagcactagtaatcatggatttgcatgataacagcctgtccggtgaacttgacacctcattttggaatctgtctaaattgcaggtactagatctttctgggaaccatataactggcagtatccctcaaaaaatttgcagcttggcaagcattgaaattttagatctttcaaacaacaacttatcaggatctataccaagatgtgccagtgcatctctaagttcgcttaatctgtatgggaattcattatcaggaaacatctcggatgatcttttcaacacatcaaatcttatgtatttggatatgagacataataagttgactggtaacctcaattggttacggcatcttgataaaatcaagacactttcattgggatggaatgactttgaaggccaaatcactccaaacttgtgtaaactaaagtgcccaaggataatcgacttctcacacaacaaactctcaggctcactgccaccatgtgttggcaacatctcttgtgagagtgatacggcagctcaaaattattcaccattgctacttatttatgttataatagaggcttacataattgttcatgacccaatagacttcacctttgctacaaaagggggacaatatacatatggttacaacttcttcgatctgatgtctggtatcgacttatccgggaatatgctgtcaggagaaattccatgggagcttgggaatctgagccatatcaaatccctcaacctgtccaacaatttcttcactggtcaaatcccagcaagctttgcaaacatgagcgagattgaaagcttggacctttcccacaatgaactgagtggattgattccatggcagctgaccaaattatcgtcattagcggtgttctctgtggcatataacaacttatcaggatgtattccaaactctggtcagttcggcacgtacggtatggatagctaccaaggcaacagtaatcttcggagtatgtcaaagggaaacatatgctctccagattcaggagcaggtgacttgccatcggaaggaagagacagtatggcagatgatccagtgctctatgcagtcagtgctgcctcattcgtcctggcattttggggcaccgttgctttcttgtttttccatccactcggacggcgtgcaattctcgcgacagggaatttggtgttttggtgtggtcattaatgatttgaagtttatttttctgtcatccatttctgattgtgaagtctccacttaccaactgcttcaaaattcttgagtctataatttttaatctaatgtccatattttgttttgggcctgtcatctaaatgtcgatgttgtgtaaatggctgttgagaaatgtagcttgctataagatgaatgaatatattaggctgcaatttac
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| CDS seq | atgagcgcaggagaagacggagtttatttcaggatgagattcttcttcttcttcttcttggttgtgctatgcttgctagattccaatatctccacgtcccatggctgcttcgtggaggagaggacggcgatgatggacattggctcctctctgacgcgctcaaacggcacggtgccgccatcatgggggcgcggcgacggtgacgacgactgctgcttgtgggagcgcgtcaaatgcagcaacatcactgggcgagtatcacatctctacttctcaaacctgtatgattctctggaagtgctaaatgcacatggtgactcgttttggcgtttcaacacgacggtcttctcctcattcccggagcttcagttcctggatctgtccagtatctatcccagttctctaaatatcgatggcttggtagggctgaagctgcccaagctacagcatctcaacctcagttataactggttgcaagagagtatcctcgcagatcttggggaactggtttcgcttgaagtcctagatgccagctccaacgccatgagtggagttgttcccactgcagttttaaaaaatcttacgaatctgaaggagctgaatttgagtgccaacggattcagcggaagccttccggggtcattacttgaactacctcaccttgatccctcaggaagttcgttagcaggacgtactccaattaattcatctttggagccagtttcactacaagtattaaatctcaacaacaacaggatgagtggagctcttccaaccgaacgagcattcggatatctaaggaacctacgagaattgcatttgagttccaataacttcactggaaacatttctactttcttgctttcacttccacatattgaacgattggatctctcgggaaatacttttgaaggacctatccctataactccatcttcaaatctttctctgtctctcaaaggtcttcggttttcccagaacaatctgagtggtaaactctcatttttttggctgaggaacctcactaaacttgaagaaatcaacttgtcagggaatattaatttagcagttgatgtcaatattcctggatgggcacctccattccaactgaaacagttagctctctctggttgtggtcttgacaaaggcataattgcagaaccacactttctacgcacacaacatcatttgcaggagcttgacttgtcaaacaataacttgtcaggaagaatgccgaattggctttttacaaaagaagcaactctggttaacctaaaccttggaaataactcgctaactggatctctaagtcccatatggcacccccaaacagctctacaatctattgttatatctaccaaccgtattacagggaagctacctgccaacttcagcgcaatatttccaagcttgtccactctggatttgtcagacaataactttcatggagaaattccgatgtcactgtgcagcatcaaacacatgaaggacttgagcttatcaaacaataatttttctggtaaaatgccgacttgtgtgttcactgattttcttgagctgtggaccttgagtgcctcaaacaaccagcttggaggtctggtgtttggtgggatgaaaaaactgtccatcgggtttgcaatgcacctacagaacaacaaatttgaaggaacactgcctcgtaatctgtcaggagcactagtaatcatggatttgcatgataacagcctgtccggtgaacttgacacctcattttggaatctgtctaaattgcaggtactagatctttctgggaaccatataactggcagtatccctcaaaaaatttgcagcttggcaagcattgaaattttagatctttcaaacaacaacttatcaggatctataccaagatgtgccagtgcatctctaagttcgcttaatctgtatgggaattcattatcaggaaacatctcggatgatcttttcaacacatcaaatcttatgtatttggatatgagacataataagttgactggtaacctcaattggttacggcatcttgataaaatcaagacactttcattgggatggaatgactttgaaggccaaatcactccaaacttgtgtaaactaaagtgcccaaggataatcgacttctcacacaacaaactctcaggctcactgccaccatgtgttggcaacatctcttgtgagagtgatacggcagctcaaaattattcaccattgctacttatttatgttataatagaggcttacataattgttcatgacccaatagacttcacctttgctacaaaagggggacaatatacatatggttacaacttcttcgatctgatgtctggtatcgacttatccgggaatatgctgtcaggagaaattccatgggagcttgggaatctgagccatatcaaatccctcaacctgtccaacaatttcttcactggtcaaatcccagcaagctttgcaaacatgagcgagattgaaagcttggacctttcccacaatgaactgagtggattgattccatggcagctgaccaaattatcgtcattagcggtgttctctgtggcatataacaacttatcaggatgtattccaaactctggtcagttcggcacgtacggtatggatagctaccaaggcaacagtaatcttcggagtatgtcaaagggaaacatatgctctccagattcaggagcaggtgacttgccatcggaaggaagagacagtatggcagatgatccagtgctctatgcagtcagtgctgcctcattcgtcctggcattttggggcaccgttgctttcttgtttttccatccactcggacggcgtgcaattctcgcgacagggaatttggtgttttggtgtggtcattaa
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| Protein seq | MSAGEDGVYFRMRFFFFFFLVVLCLLDSNISTSHGCFVEERTAMMDIGSSLTRSNGTVPPSWGRGDGDDDCCLWERVKCSNITGRVSHLYFSNLYDSLEVLNAHGDSFWRFNTTVFSSFPELQFLDLSSIYPSSLNIDGLVGLKLPKLQHLNLSYNWLQESILADLGELVSLEVLDASSNAMSGVVPTAVLKNLTNLKELNLSANGFSGSLPGSLLELPHLDPSGSSLAGRTPINSSLEPVSLQVLNLNNNRMSGALPTERAFGYLRNLRELHLSSNNFTGNISTFLLSLPHIERLDLSGNTFEGPIPITPSSNLSLSLKGLRFSQNNLSGKLSFFWLRNLTKLEEINLSGNINLAVDVNIPGWAPPFQLKQLALSGCGLDKGIIAEPHFLRTQHHLQELDLSNNNLSGRMPNWLFTKEATLVNLNLGNNSLTGSLSPIWHPQTALQSIVISTNRITGKLPANFSAIFPSLSTLDLSDNNFHGEIPMSLCSIKHMKDLSLSNNNFSGKMPTCVFTDFLELWTLSASNNQLGGLVFGGMKKLSIGFAMHLQNNKFEGTLPRNLSGALVIMDLHDNSLSGELDTSFWNLSKLQVLDLSGNHITGSIPQKICSLASIEILDLSNNNLSGSIPRCASASLSSLNLYGNSLSGNISDDLFNTSNLMYLDMRHNKLTGNLNWLRHLDKIKTLSLGWNDFEGQITPNLCKLKCPRIIDFSHNKLSGSLPPCVGNISCESDTAAQNYSPLLLIYVIIEAYIIVHDPIDFTFATKGGQYTYGYNFFDLMSGIDLSGNMLSGEIPWELGNLSHIKSLNLSNNFFTGQIPASFANMSEIESLDLSHNELSGLIPWQLTKLSSLAVFSVAYNNLSGCIPNSGQFGTYGMDSYQGNSNLRSMSKGNICSPDSGAGDLPSEGRDSMADDPVLYAVSAASFVLAFWGTVAFLFFHPLGRRAILATGNLVFWCGH |
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| Function | Receptor like protein 21 [UniProtKB/Swiss-Prot:Q9SKK2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0028860 | OsLiXu_04g0028860.01 | Chr04 | 35262251 | 35265674 | + | NAM | ||
| CDS seq | atgagcgcaggagaagacggagtttatttcaggatgagattcttcttcttcttcttcttggttgtgctatgcttgctagattccaatatctccacgtcccatggctgcttcgtggaggagaggacggcgatgatggacattggctcctctctgacgcgctcaaacggcacggtgccgccatcatgggggcgcggcgacggtgacgacgactgctgcttgtgggagcgcgtcaaatgcagcaacatcactgggcgagtatcacatctctacttctcaaacctgtatgattctctggaagtgctaaatgcacatggtgactcgttttggcgtttcaacacgacggtcttctcctcattcccggagcttcagttcctggatctgtccagtatctatcccagttctctaaatatcgatggcttggtagggctgaagctgcccaagctacagcatctcaacctcagttataactggttgcaagagagtatcctcgcagatcttggggaactggtttcgcttgaagtcctagatgccagctccaacgccatgagtggagttgttcccactgcagttttaaaaaatcttacgaatctgaaggagctgaatttgagtgccaacggattcagcggaagccttccggggtcattacttgaactacctcaccttgatccctcaggaagttcgttagcaggacgtactccaattaattcatctttggagccagtttcactacaagtattaaatctcaacaacaacaggatgagtggagctcttccaaccgaacgagcattcggatatctaaggaacctacgagaattgcatttgagttccaataacttcactggaaacatttctactttcttgctttcacttccacatattgaacgattggatctctcgggaaatacttttgaaggacctatccctataactccatcttcaaatctttctctgtctctcaaaggtcttcggttttcccagaacaatctgagtggtaaactctcatttttttggctgaggaacctcactaaacttgaagaaatcaacttgtcagggaatattaatttagcagttgatgtcaatattcctggatgggcacctccattccaactgaaacagttagctctctctggttgtggtcttgacaaaggcataattgcagaaccacactttctacgcacacaacatcatttgcaggagcttgacttgtcaaacaataacttgtcaggaagaatgccgaattggctttttacaaaagaagcaactctggttaacctaaaccttggaaataactcgctaactggatctctaagtcccatatggcacccccaaacagctctacaatctattgttatatctaccaaccgtattacagggaagctacctgccaacttcagcgcaatatttccaagcttgtccactctggatttgtcagacaataactttcatggagaaattccgatgtcactgtgcagcatcaaacacatgaaggacttgagcttatcaaacaataatttttctggtaaaatgccgacttgtgtgttcactgattttcttgagctgtggaccttgagtgcctcaaacaaccagcttggaggtctggtgtttggtgggatgaaaaaactgtccatcgggtttgcaatgcacctacagaacaacaaatttgaaggaacactgcctcgtaatctgtcaggagcactagtaatcatggatttgcatgataacagcctgtccggtgaacttgacacctcattttggaatctgtctaaattgcaggtactagatctttctgggaaccatataactggcagtatccctcaaaaaatttgcagcttggcaagcattgaaattttagatctttcaaacaacaacttatcaggatctataccaagatgtgccagtgcatctctaagttcgcttaatctgtatgggaattcattatcaggaaacatctcggatgatcttttcaacacatcaaatcttatgtatttggatatgagacataataagttgactggtaacctcaattggttacggcatcttgataaaatcaagacactttcattgggatggaatgactttgaaggccaaatcactccaaacttgtgtaaactaaagtgcccaaggataatcgacttctcacacaacaaactctcaggctcactgccaccatgtgttggcaacatctcttgtgagagtgatacggcagctcaaaattattcaccattgctacttatttatgttataatagaggcttacataattgttcatgacccaatagacttcacctttgctacaaaagggggacaatatacatatggttacaacttcttcgatctgatgtctggtatcgacttatccgggaatatgctgtcaggagaaattccatgggagcttgggaatctgagccatatcaaatccctcaacctgtccaacaatttcttcactggtcaaatcccagcaagctttgcaaacatgagcgagattgaaagcttggacctttcccacaatgaactgagtggattgattccatggcagctgaccaaattatcgtcattagcggtgttctctgtggcatataacaacttatcaggatgtattccaaactctggtcagttcggcacgtacggtatggatagctaccaaggcaacagtaatcttcggagtatgtcaaagggaaacatatgctctccagattcaggagcaggtgacttgccatcggaaggaagagacagtatggcagatgatccagtgctctatgcagtcagtgctgcctcattcgtcctggcattttggggcaccgttgctttcttgtttttccatccactcggacggcgtgcaattctcgcgacagggaatttggtgttttggtgtggtcattaa
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| Protein seq | MSAGEDGVYFRMRFFFFFFLVVLCLLDSNISTSHGCFVEERTAMMDIGSSLTRSNGTVPPSWGRGDGDDDCCLWERVKCSNITGRVSHLYFSNLYDSLEVLNAHGDSFWRFNTTVFSSFPELQFLDLSSIYPSSLNIDGLVGLKLPKLQHLNLSYNWLQESILADLGELVSLEVLDASSNAMSGVVPTAVLKNLTNLKELNLSANGFSGSLPGSLLELPHLDPSGSSLAGRTPINSSLEPVSLQVLNLNNNRMSGALPTERAFGYLRNLRELHLSSNNFTGNISTFLLSLPHIERLDLSGNTFEGPIPITPSSNLSLSLKGLRFSQNNLSGKLSFFWLRNLTKLEEINLSGNINLAVDVNIPGWAPPFQLKQLALSGCGLDKGIIAEPHFLRTQHHLQELDLSNNNLSGRMPNWLFTKEATLVNLNLGNNSLTGSLSPIWHPQTALQSIVISTNRITGKLPANFSAIFPSLSTLDLSDNNFHGEIPMSLCSIKHMKDLSLSNNNFSGKMPTCVFTDFLELWTLSASNNQLGGLVFGGMKKLSIGFAMHLQNNKFEGTLPRNLSGALVIMDLHDNSLSGELDTSFWNLSKLQVLDLSGNHITGSIPQKICSLASIEILDLSNNNLSGSIPRCASASLSSLNLYGNSLSGNISDDLFNTSNLMYLDMRHNKLTGNLNWLRHLDKIKTLSLGWNDFEGQITPNLCKLKCPRIIDFSHNKLSGSLPPCVGNISCESDTAAQNYSPLLLIYVIIEAYIIVHDPIDFTFATKGGQYTYGYNFFDLMSGIDLSGNMLSGEIPWELGNLSHIKSLNLSNNFFTGQIPASFANMSEIESLDLSHNELSGLIPWQLTKLSSLAVFSVAYNNLSGCIPNSGQFGTYGMDSYQGNSNLRSMSKGNICSPDSGAGDLPSEGRDSMADDPVLYAVSAASFVLAFWGTVAFLFFHPLGRRAILATGNLVFWCGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.044829 | 0.076417 | 0.122183 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0647900 | RBH | 0.252332 | 0.120295 | 0.191133 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g55420 | RBH | 0.191089 | 0.100120 | 0.130580 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0647900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0028770 | RBH | 0.000000 | 1.677204 | 0.202339 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0029570 | RBH | 0.000000 | 0.147078 | 0.258064 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029150 | RBH | 0.000000 | 0.890891 | 0.561121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028980 | RBH | 0.034978 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029240 | RBH | 0.0 | 0.804663 | 0.816257 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0519900 | RBH | 0.2527125 | 1.349375 | 0.41431 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0027880 | RBH | 0.086610 | 0.224170 | 0.157804 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0524900 | RBH | 0.8634105 | 4.741583 | 4.366243 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0028320 | RBH | 0.0 | 0.038165 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028150 | RBH | 0.0 | 0.720277 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028260 | RBH | 1.255963 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0028830 | RBH | 0.075462 | 0.631338 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028230 | RBH | 0.043269 | 1.022830 | 1.063177 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028080 | RBH | 0.355491 | 2.867533 | 0.443310 |
