Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0015200 | OGI:04068080 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:24148335-24150465 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccttcgtcgccgtcgcctcccaccctctgcaccctcctcccctcctcctcctcctcctcctcctctggccacccccaccacccgcgccaacccaccgccgccggcgggtggctcccgccgcgcctccgcagctccggcgccaagcccccgccgaccccgaggctcgagagccccaccacgcggcagcagcagcaggcgccgcgacgcctcctcgggtccgaccgccgcctcagcgcgctcgtccaccgcggggacctcgacgcggcgctccgcctcgtcgagtcctccccgcgcccgcccgacgcggcgctcgccaacaggctcgtccgcgacctctgccgccgcggccgccccgacgacgccgagcgcgtcgtcggggcctgcgggccggccgccaccgtcgtcgcgtacggcgccctcaccgacgggtactgccgcgcggggcggctcggggacgcgcggcgcgtcgtggggggcatgcccgtgcagcccaacgcgtacacctacaacccgctcatccacacgctctgcgagcgtggccaggtcagggacgcgctctcggtgctcgacgatatgctctgccgcgggtgcgcccccgacgtcgtcacctacaacatcctcctcgaggcgacgtgcaaggggagggggtaccggcaggccatggagttgatcgacctgatgcgcgccgaggggtgcacgccgaacaacgtgacgtataatgtcctcatggatggtatgtgcggagaaggtgatgtggatgacgccctcgagttattgagaaacttgccctctcatggttgcaagccgagtactgtcaactacaacactgtcttgaagggcctctgcagtgccgagaggtggggagatgccgatgagcttgtaacagagatgctccgagagaattgtcccccgaatgaagcaacgttcaatgtggtcatttattcattgtgtcggaaaggactgctccagcaggcaatccagcttctagagaaaatgtcaaagcatgggtgcacggcaaatattgtcacctataatgccatcatcaacggcctctgcgagcaaaggaatgtggatggtgctatggggttgctaagcaagatgaaatcttatggttgtaaacctgatattgtcacctacaacactctattgaaggggttgtgtagtgcagcgcgatgggtggatgctgaagagctaatggataacatgacccaaaatggttgcctcccagataatgtgacattcaacacactgattggtttcttgtgtcaaaaagggttgatggtcgatgctattgaagtatttaagcaaatgcctgacaaaggttgtactccgaattcgatcacttacagtacaataataagtgggcttgccaaggctactaagctggatcaagcccttgagttattcaatgaaatgggccacaaaggattcaacccagataaaatttatcagttattagctgagtgtctgaatgatgatgatacaattgaggaagcaattcagactgttcgcaaactgcaggattcaggcatatcacctcacactgtgctctacaatgcaatcctcctaggactttgtagaaatggcaaaacagagtttgctattgatatcatggcttatatggtgtctagtggttgcatgcctgatgacttgacttacgtcatactcattgaaggtctggcatacgagggctatttgaatgaggcaagagaattgctaatcaagttgtgctctagagatgttcttgttaacagcttgatcaagagtgaagctctgttgttagatcaaaatatccacgcttcttgattcatgttgaggtcaagggcttgcttgttcttttgacttcatttatgtcatagtgaattagtgatggagtaggttagcacttacacattgcttcagttttgttgatatgtttagttaccattgcttcagttgtattgtagactaaagattagttctccatttgctttagttatttatctgaagatgtgctcaaatatctgtcactgttggttggtcttagtagcaattttctaaggataactgtatggttacaaatgtcatcatgttggattgtaaatatgacttggtttttactttctaaccacagaacaacatactttgt
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| CDS seq | atgccttcgtcgccgtcgcctcccaccctctgcaccctcctcccctcctcctcctcctcctcctcctctggccacccccaccacccgcgccaacccaccgccgccggcgggtggctcccgccgcgcctccgcagctccggcgccaagcccccgccgaccccgaggctcgagagccccaccacgcggcagcagcagcaggcgccgcgacgcctcctcgggtccgaccgccgcctcagcgcgctcgtccaccgcggggacctcgacgcggcgctccgcctcgtcgagtcctccccgcgcccgcccgacgcggcgctcgccaacaggctcgtccgcgacctctgccgccgcggccgccccgacgacgccgagcgcgtcgtcggggcctgcgggccggccgccaccgtcgtcgcgtacggcgccctcaccgacgggtactgccgcgcggggcggctcggggacgcgcggcgcgtcgtggggggcatgcccgtgcagcccaacgcgtacacctacaacccgctcatccacacgctctgcgagcgtggccaggtcagggacgcgctctcggtgctcgacgatatgctctgccgcgggtgcgcccccgacgtcgtcacctacaacatcctcctcgaggcgacgtgcaaggggagggggtaccggcaggccatggagttgatcgacctgatgcgcgccgaggggtgcacgccgaacaacgtgacgtataatgtcctcatggatggtatgtgcggagaaggtgatgtggatgacgccctcgagttattgagaaacttgccctctcatggttgcaagccgagtactgtcaactacaacactgtcttgaagggcctctgcagtgccgagaggtggggagatgccgatgagcttgtaacagagatgctccgagagaattgtcccccgaatgaagcaacgttcaatgtggtcatttattcattgtgtcggaaaggactgctccagcaggcaatccagcttctagagaaaatgtcaaagcatgggtgcacggcaaatattgtcacctataatgccatcatcaacggcctctgcgagcaaaggaatgtggatggtgctatggggttgctaagcaagatgaaatcttatggttgtaaacctgatattgtcacctacaacactctattgaaggggttgtgtagtgcagcgcgatgggtggatgctgaagagctaatggataacatgacccaaaatggttgcctcccagataatgtgacattcaacacactgattggtttcttgtgtcaaaaagggttgatggtcgatgctattgaagtatttaagcaaatgcctgacaaaggttgtactccgaattcgatcacttacagtacaataataagtgggcttgccaaggctactaagctggatcaagcccttgagttattcaatgaaatgggccacaaaggattcaacccagataaaatttatcagttattagctgagtgtctgaatgatgatgatacaattgaggaagcaattcagactgttcgcaaactgcaggattcaggcatatcacctcacactgtgctctacaatgcaatcctcctaggactttgtagaaatggcaaaacagagtttgctattgatatcatggcttatatggtgtctagtggttgcatgcctgatgacttgacttacgtcatactcattgaaggtctggcatacgagggctatttgaatgaggcaagagaattgctaatcaagttgtgctctagagatgttcttgttaacagcttgatcaagagtgaagctctgttgttagatcaaaatatccacgcttcttga
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| Protein seq | MPSSPSPPTLCTLLPSSSSSSSSGHPHHPRQPTAAGGWLPPRLRSSGAKPPPTPRLESPTTRQQQQAPRRLLGSDRRLSALVHRGDLDAALRLVESSPRPPDAALANRLVRDLCRRGRPDDAERVVGACGPAATVVAYGALTDGYCRAGRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNSLIKSEALLLDQNIHAS |
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| Function | Pentatricopeptide repeat-containing protein At1g09900 [UniProtKB/Swiss-Prot:Q3EDF8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0015200 | OsLiXu_04g0015200.01 | Chr04 | 24148335 | 24150465 | + | NAM | ||
| CDS seq | atgccttcgtcgccgtcgcctcccaccctctgcaccctcctcccctcctcctcctcctcctcctcctctggccacccccaccacccgcgccaacccaccgccgccggcgggtggctcccgccgcgcctccgcagctccggcgccaagcccccgccgaccccgaggctcgagagccccaccacgcggcagcagcagcaggcgccgcgacgcctcctcgggtccgaccgccgcctcagcgcgctcgtccaccgcggggacctcgacgcggcgctccgcctcgtcgagtcctccccgcgcccgcccgacgcggcgctcgccaacaggctcgtccgcgacctctgccgccgcggccgccccgacgacgccgagcgcgtcgtcggggcctgcgggccggccgccaccgtcgtcgcgtacggcgccctcaccgacgggtactgccgcgcggggcggctcggggacgcgcggcgcgtcgtggggggcatgcccgtgcagcccaacgcgtacacctacaacccgctcatccacacgctctgcgagcgtggccaggtcagggacgcgctctcggtgctcgacgatatgctctgccgcgggtgcgcccccgacgtcgtcacctacaacatcctcctcgaggcgacgtgcaaggggagggggtaccggcaggccatggagttgatcgacctgatgcgcgccgaggggtgcacgccgaacaacgtgacgtataatgtcctcatggatggtatgtgcggagaaggtgatgtggatgacgccctcgagttattgagaaacttgccctctcatggttgcaagccgagtactgtcaactacaacactgtcttgaagggcctctgcagtgccgagaggtggggagatgccgatgagcttgtaacagagatgctccgagagaattgtcccccgaatgaagcaacgttcaatgtggtcatttattcattgtgtcggaaaggactgctccagcaggcaatccagcttctagagaaaatgtcaaagcatgggtgcacggcaaatattgtcacctataatgccatcatcaacggcctctgcgagcaaaggaatgtggatggtgctatggggttgctaagcaagatgaaatcttatggttgtaaacctgatattgtcacctacaacactctattgaaggggttgtgtagtgcagcgcgatgggtggatgctgaagagctaatggataacatgacccaaaatggttgcctcccagataatgtgacattcaacacactgattggtttcttgtgtcaaaaagggttgatggtcgatgctattgaagtatttaagcaaatgcctgacaaaggttgtactccgaattcgatcacttacagtacaataataagtgggcttgccaaggctactaagctggatcaagcccttgagttattcaatgaaatgggccacaaaggattcaacccagataaaatttatcagttattagctgagtgtctgaatgatgatgatacaattgaggaagcaattcagactgttcgcaaactgcaggattcaggcatatcacctcacactgtgctctacaatgcaatcctcctaggactttgtagaaatggcaaaacagagtttgctattgatatcatggcttatatggtgtctagtggttgcatgcctgatgacttgacttacgtcatactcattgaaggtctggcatacgagggctatttgaatgaggcaagagaattgctaatcaagttgtgctctagagatgttcttgttaacagcttgatcaagagtgaagctctgttgttagatcaaaatatccacgcttcttga
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| Protein seq | MPSSPSPPTLCTLLPSSSSSSSSGHPHHPRQPTAAGGWLPPRLRSSGAKPPPTPRLESPTTRQQQQAPRRLLGSDRRLSALVHRGDLDAALRLVESSPRPPDAALANRLVRDLCRRGRPDDAERVVGACGPAATVVAYGALTDGYCRAGRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNSLIKSEALLLDQNIHAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.301880 | 0.0 | 0.323729 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0477200 | SBH | 1.303879 | 1.515675 | 0.811290 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39000 | SBH | 0.337633 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0477200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014880 | RBH | 0.089149 | 0.0 | 0.813993 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015740 | RBH | 0.060284 | 0.0 | 0.149715 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015460 | RBH | 0.571837 | 0.0 | 0.449998 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015040 | RBH | 0.100395 | 0.055360 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015370 | RBH | 0.853979 | 0.0 | 2.122491 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0347400 | RBH | 2.8544355 | 3.268325 | 1.4476775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014210 | RBH | 0.0 | 0.0 | 0.057835 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0344100 | RBH | 2.887991 | 2.404495 | 4.435787 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0014850 | RBH | 0.038876 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014550 | RBH | 0.170905 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014560 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021460 | SBH | 0.904146 | 0.0 | 1.007726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015370 | RBH | 0.324169 | 0.564525 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014450 | RBH | 0.090626 | 0.0 | 0.166515 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014520 | RBH | 0.325382 | 3.715279 | 1.181055 |
