Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g39000 | OGI:04070670 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:23163348-23163836 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGTATCCGTCCGTCCAAGATGAATTCAATAGGCCGGCAATGAGGGTGTTATAGCTGACAACATTGCGCACAATGCCCCTCACAGGCATTTCGTCGAACAAGCTACGAGCGCGCTCGAACTCCCCTGTCCTGCACCACTCCCCAATCAAGCAGTTGTAGGTGTAGAGATTTGGCTCGACTCCACCCCTCCTCATCTCCTCAAACAAGGCGAAACCCTTCTCCCTTTGGCCATGAGTGAAGTAGCCATGCATCAGAGCAGTGTAAGTGACCTCGTTAGGTGCAAGCCCCAGGAGCGGCGTTTCATCGAACACCCTCCGGGCCTCCGCCACATCGCCGCCCTTGCAGCAGCCGTTGACGAGCGCCGTGCACGCGGTGACGTCCAGCGCCGCATCGCCCGACTTGGTCCCGCGGGCGAGCATCGCGAGCGCCGAGCGGACATCGCCGGCCGCGCAGAGCCGGCGCACGGCTGCGGCCGTGGTTCCCCACAT
More
|
||||||||||
| CDS seq | ATGTGGGGAACCACGGCCGCAGCCGTGCGCCGGCTCTGCGCGGCCGGCGATGTCCGCTCGGCGCTCGCGATGCTCGCCCGCGGGACCAAGTCGGGCGATGCGGCGCTGGACGTCACCGCGTGCACGGCGCTCGTCAACGGCTGCTGCAAGGGCGGCGATGTGGCGGAGGCCCGGAGGGTGTTCGATGAAACGCCGCTCCTGGGGCTTGCACCTAACGAGGTCACTTACACTGCTCTGATGCATGGCTACTTCACTCATGGCCAAAGGGAGAAGGGTTTCGCCTTGTTTGAGGAGATGAGGAGGGGTGGAGTCGAGCCAAATCTCTACACCTACAACTGCTTGATTGGGGAGTGGTGCAGGACAGGGGAGTTCGAGCGCGCTCGTAGCTTGTTCGACGAAATGCCTGTGAGGGGCATTGTGCGCAATGTTGTCAGCTATAACACCCTCATTGCCGGCCTATTGAATTCATCTTGGACGGACGGATACTGA
More
|
||||||||||
| Protein seq | MWGTTAAAVRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDETPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLLNSSWTDGY |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At4g11690 [UniProtKB/Swiss-Prot:Q9T0D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g39000 | LOC_Os04g39000.1 | Chr04 | 23163348 | 23163836 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGGGGAACCACGGCCGCAGCCGTGCGCCGGCTCTGCGCGGCCGGCGATGTCCGCTCGGCGCTCGCGATGCTCGCCCGCGGGACCAAGTCGGGCGATGCGGCGCTGGACGTCACCGCGTGCACGGCGCTCGTCAACGGCTGCTGCAAGGGCGGCGATGTGGCGGAGGCCCGGAGGGTGTTCGATGAAACGCCGCTCCTGGGGCTTGCACCTAACGAGGTCACTTACACTGCTCTGATGCATGGCTACTTCACTCATGGCCAAAGGGAGAAGGGTTTCGCCTTGTTTGAGGAGATGAGGAGGGGTGGAGTCGAGCCAAATCTCTACACCTACAACTGCTTGATTGGGGAGTGGTGCAGGACAGGGGAGTTCGAGCGCGCTCGTAGCTTGTTCGACGAAATGCCTGTGAGGGGCATTGTGCGCAATGTTGTCAGCTATAACACCCTCATTGCCGGCCTATTGAATTCATCTTGGACGGACGGATACTGA
More
|
|||||||
| Protein seq | MWGTTAAAVRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDETPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLLNSSWTDGY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.337633 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0477200 | SBH | 1.303879 | 1.515675 | 0.811290 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50690 | SBH | 0.225634 | 0.368601 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0477200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016190 | RBH | 0.432003 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016930 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016660 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017510 | SBH | 1.697631 | 3.540430 | 2.351803 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0361500 | RBH | 0.343388 | 0.5321005 | 0.2997215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016300 | SBH | 0.030663 | 0.136682 | 0.188993 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0370800 | SBH | 1.1093005 | 2.844188 | 4.2427765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0015860 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016740 | SBH | 0.0 | 4.447593 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017340 | SBH | 0.083301 | 2.089452 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016570 | SBH | 0.000000 | 0.628572 | 0.250357 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008760 | SBH | 0.604033 | 2.569614 | 0.338576 |
