Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0477200 | OGI:04072660 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:23882661-23885227 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCTCCAAACGACTAACCAATAGTATAAATTAACAAGAGGAACATTGTTATGGTTTTGGAACAGAACGGTCTCTGCTGTACAGTTTCAATGACCAAACACTCTGCACTCTTACAAAGAAAAGGACAAGCTAGATAAACCTATCGCTCTGTGGTTCACTGTGACAGTGAATCAGTGATGATATGCATCATGATACATAAATAATTACCAACATAGAGTATGACAATGAAACATCAAAATCGACAATGATGAAAAGCACCTCAGGAAGTAACTAAGCACATGCCAACAAAGGCCCTCTTTACTCTATGCAATAAAAATGATCTTCAGTGCTACCTCTTCAGATGATACTTGCAGTAGTAATGGAAACCAGGACCACACAAAGTGCAGACACTGTGATGCTGTCAATGACAAGTAAGCTGGCCAGGGTGATTAACTTTATCCAGTCTCCACTTTGCTGGGCAGGACAGATCATTAAGATGCGTTATGCTTAGCCTTAGCCGTTAGTGACAAGTCACAAGCTGTCTAATCTTATTGTTATCAGATTAATAAAGATAGTATGACAATGAGAAAACCAAATAAACAGAGTGAGTTCTGATATAGCCAAGCCGAATCTTGAGAGTTCTAGATTGGAATGTTTGTTGTCGGGAATCTTCAAAACAGCATGTGTTTCCTTCTTGTCAAAATTACAGGCATACGTCCACAGATGAACTGAGAAAAGATGGACGTCTACAACTTGGGCAAGAACAACGGGGAGACAAAATGTGAGTGCCACCTGATCCTCATCGCCAGATACGCCAGGCTTCAAAATGATTATGTTGCACTCCAGTCAGAAAATGGCCAGGCAATTTAACATGATATTGCACACATGGCAGAGGTTGAGCAAGTCGTTCAAGCATTTGATTTTCCTCCTTTTTTGAAGGCATGAAGTATTTGAACTGATCTGCTCTATCTGCCCAAAATGCCTCTCTGCTTAATAGATGGCTCATACTTTCGCAGCATCTGCTGCAGCCAGTCGCTCATCATCAATGGCACGCTCGTCTTCAGTGGTAAGACCCTCAATCAGTGAGATGTATGTGCTGTCATCAGGGGTGATGCCATTCTCCACCATCTCCTTCACCATGTTCTCAGCGTCATCTCCCTGGCCATTCTTACAGAGCCCCTGTATCAGCGCATTATATGTCAAAAGCGTTGGATTGAACCCCTTATTCATCATCTCATTCCGAATCCTCAGAGCATCCTTGACATCACCCTTCATGCTGTAGCCACTGATCAGCGTGTTATAAGTGACAAGGTCTGGCTGGATTCCCCTCTCTGTCATCTCATCAATGAGCTTGCGCGCTTCATCAACACGTCCCAGTAGACACAGCCCCCTCATTAGCGTATTGTAGGTCACATCATCTGGTGCGATCCTTTTCTTCTCCATCTCACCCATTATCTCGAAAGCTCGATCGATGTTGCCAGAAGTGGAGTGACTATTGATCAGAGCATTGTACAAGACAAGGTCAGGCCTAATGCCTCTCCTTACAGCCTCATCAAACAGCTTATCTGTCTCCTGAACTTGCCCCTTCTTAGACAAGGCATATATCAATGCCGTATAGGTCACTACTGTCGCACGGACCCCTCTCCTGGACATATTCTCAAAAATCTCTAGTGCTTTCTTCACGTTGCCCTCTTTGCAATGCCCGTTTATCAATATATTGTACGTGAACACATCCGGCGCAAGACCCTTTCCACCCATCTCCTCGACCAACTCATATGCCTCTGTTCCACGCCCATCCATGAACAAGGCGTGCACGAGTAAATTGTAGGTCGCGACTGTCATTGCGACCCCTCTCTCCACCATTCTATCACGGTAAAGGAGCGCAGTATCCAGCTTACCCTGGTCACAGTATCCACCAATCAAGGCGTTGTACATCACAGCTTCCGGTTTAACCTCTCCCTTGGTCAGCATTTCGTCGAACACCTTCACTGCCTCATCGACCCGGCCAACCTTACACCAGCCAGAGATCACCGTGCCGTAGGTGTACTGGTTGGGCGCGATTCCTCCGCGTTCTCGCATCTCCCGCATAATATCCAGCGCCGCCTGGACGCGGCCCCGGGAGCAGAACCCGGCGATGACGGTGTTGTAGGTGACGGCGTTCGGGCGGGGCATCTGGCGGAGGAGCTCGAGCGCGCGGGCGGGCTTCCCGGCGGAGCAGAGGTGGCGGAGCATGATGTTGAAGGTGGTGGTGCAGAGCGGGAGGCGGAGGCGGAACATGTCGGCGAAGAGGGCGAAGGCCGGGGCGGAGGGGAGGGCGGAGAGGAGCGGGTGGAGCGAGGCGGTCGAGATGGGGAGGGATAGGGACTTCATCCGCGAGTAGAGGCGGAGGGAGGTGGCGTGGGGGCGCACGGCGGCGGAGGCGGTGAGCAGGAGGTTGGGCAGCGAGGACGGCGCGCCGTCGAGGTGCGGGAGCACGGCGAGCGGCGAGAGCGCCTTGTCCGCGGACAGCACCGACTTGAAGAGCGCGAGCGCCGCCGCCGACGTCGGCGAGGCGCGGGCGGCCGCCGCGACGGCGGCGGCGGCGGAGGT
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| CDS seq | ATGAAGTCCCTATCCCTCCCCATCTCGACCGCCTCGCTCCACCCGCTCCTCTCCGCCCTCCCCTCCGCCCCGGCCTTCGCCCTCTTCGCCGACATGTTCCGCCTCCGCCTCCCGCTCTGCACCACCACCTTCAACATCATGCTCCGCCACCTCTGCTCCGCCGGGAAGCCCGCCCGCGCGCTCGAGCTCCTCCGCCAGATGCCCCGCCCGAACGCCGTCACCTACAACACCGTCATCGCCGGGTTCTGCTCCCGGGGCCGCGTCCAGGCGGCGCTGGATATTATGCGGGAGATGCGAGAACGCGGAGGAATCGCGCCCAACCAGTACACCTACGGCACGGTGATCTCTGGCTGGTGTAAGGTTGGCCGGGTCGATGAGGCAGTGAAGGTGTTCGACGAAATGCTGACCAAGGGAGAGGTTAAACCGGAAGCTGTGATGTACAACGCCTTGATTGGTGGATACTGTGACCAGGGTAAGCTGGATACTGCGCTCCTTTACCGTGATAGAATGGTGGAGAGAGGGGTCGCAATGACAGTCGCGACCTACAATTTACTCGTGCACGCCTTGTTCATGGATGGGCGTGGAACAGAGGCATATGAGTTGGTCGAGGAGATGGGTGGAAAGGGTCTTGCGCCGGATGTGTTCACGTACAATATATTGATAAACGGGCATTGCAAAGAGGGCAACGTGAAGAAAGCACTAGAGATTTTTGAGAATATGTCCAGGAGAGGGGTCCGTGCGACAGTAGTGACCTATACGGCATTGATATATGCCTTGTCTAAGAAGGGGCAAGTTCAGGAGACAGATAAGCTGTTTGATGAGGCTGTAAGGAGAGGCATTAGGCCTGACCTTGTCTTGTACAATGCTCTGATCAATAGTCACTCCACTTCTGGCAACATCGATCGAGCTTTCGAGATAATGGGTGAGATGGAGAAGAAAAGGATCGCACCAGATGATGTGACCTACAATACGCTAATGAGGGGGCTGTGTCTACTGGGACGTGTTGATGAAGCGCGCAAGCTCATTGATGAGATGACAGAGAGGGGAATCCAGCCAGACCTTGTCACTTATAACACGCTGATCAGTGGCTACAGCATGAAGGGTGATGTCAAGGATGCTCTGAGGATTCGGAATGAGATGATGAATAAGGGGTTCAATCCAACGCTTTTGACATATAATGCGCTGATACAGGGGCTCTGTAAGAATGGCCAGGGAGATGACGCTGAGAACATGGTGAAGGAGATGGTGGAGAATGGCATCACCCCTGATGACAGCACATACATCTCACTGATTGAGGGTCTTACCACTGAAGACGAGCGTGCCATTGATGATGAGCGACTGGCTGCAGCAGATGCTGCGAAAGTATGA
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| Protein seq | MKSLSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAADAAKV |
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| Function | Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [UniProtKB/Swiss-Prot:Q9ZQF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0477200 | OsNip_04t0477200-01 | Chr04 | 23882661 | 23885227 | - | RAP2018-11-26 | ||
| CDS seq | ATGAAGTCCCTATCCCTCCCCATCTCGACCGCCTCGCTCCACCCGCTCCTCTCCGCCCTCCCCTCCGCCCCGGCCTTCGCCCTCTTCGCCGACATGTTCCGCCTCCGCCTCCCGCTCTGCACCACCACCTTCAACATCATGCTCCGCCACCTCTGCTCCGCCGGGAAGCCCGCCCGCGCGCTCGAGCTCCTCCGCCAGATGCCCCGCCCGAACGCCGTCACCTACAACACCGTCATCGCCGGGTTCTGCTCCCGGGGCCGCGTCCAGGCGGCGCTGGATATTATGCGGGAGATGCGAGAACGCGGAGGAATCGCGCCCAACCAGTACACCTACGGCACGGTGATCTCTGGCTGGTGTAAGGTTGGCCGGGTCGATGAGGCAGTGAAGGTGTTCGACGAAATGCTGACCAAGGGAGAGGTTAAACCGGAAGCTGTGATGTACAACGCCTTGATTGGTGGATACTGTGACCAGGGTAAGCTGGATACTGCGCTCCTTTACCGTGATAGAATGGTGGAGAGAGGGGTCGCAATGACAGTCGCGACCTACAATTTACTCGTGCACGCCTTGTTCATGGATGGGCGTGGAACAGAGGCATATGAGTTGGTCGAGGAGATGGGTGGAAAGGGTCTTGCGCCGGATGTGTTCACGTACAATATATTGATAAACGGGCATTGCAAAGAGGGCAACGTGAAGAAAGCACTAGAGATTTTTGAGAATATGTCCAGGAGAGGGGTCCGTGCGACAGTAGTGACCTATACGGCATTGATATATGCCTTGTCTAAGAAGGGGCAAGTTCAGGAGACAGATAAGCTGTTTGATGAGGCTGTAAGGAGAGGCATTAGGCCTGACCTTGTCTTGTACAATGCTCTGATCAATAGTCACTCCACTTCTGGCAACATCGATCGAGCTTTCGAGATAATGGGTGAGATGGAGAAGAAAAGGATCGCACCAGATGATGTGACCTACAATACGCTAATGAGGGGGCTGTGTCTACTGGGACGTGTTGATGAAGCGCGCAAGCTCATTGATGAGATGACAGAGAGGGGAATCCAGCCAGACCTTGTCACTTATAACACGCTGATCAGTGGCTACAGCATGAAGGGTGATGTCAAGGATGCTCTGAGGATTCGGAATGAGATGATGAATAAGGGGTTCAATCCAACGCTTTTGACATATAATGCGCTGATACAGGGGCTCTGTAAGAATGGCCAGGGAGATGACGCTGAGAACATGGTGAAGGAGATGGTGGAGAATGGCATCACCCCTGATGACAGCACATACATCTCACTGATTGAGGGTCTTACCACTGAAGACGAGCGTGCCATTGATGATGAGCGACTGGCTGCAGCAGATGCTGCGAAAGTATGA
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| Protein seq | MKSLSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTEDERAIDDERLAAADAAKV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0477200 | OsNip_04t0477200-02 | Chr04 | 23883179 | 23883519 | - | RAP2018-11-26 | ||
| CDS seq | - |
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| Protein seq | - |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.303879 | 1.515675 | 0.811290 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0565400 | RBH | 5.134666 | 3.616355 | 3.867090 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g40130 | RBH | 0.770531 | 0.877145 | 0.208842 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0477200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017070 | RBH | 0.067129 | 1.390887 | 0.799683 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017860 | RBH | 0.252659 | 0.0 | 1.189197 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017560 | RBH | 0.639145 | 0.000000 | 1.636149 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017290 | RBH | 0.0 | 0.099540 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017510 | RBH | 1.697631 | 3.540430 | 2.351803 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0372400 | RBH | 1.2497725 | 2.4435525 | 1.845969 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016300 | RBH | 0.030663 | 0.136682 | 0.188993 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0370800 | RBH | 1.1093005 | 2.844188 | 4.2427765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016860 | RBH | 0.117315 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016720 | RBH | 0.193357 | 2.124400 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016740 | RBH | 0.0 | 4.447593 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017230 | RBH | 0.228802 | 0.206516 | 0.157575 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017340 | RBH | 0.083301 | 2.089452 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016570 | RBH | 0.000000 | 0.628572 | 0.250357 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016570 | RBH | 0.671728 | 2.668794 | 2.490685 |
